Literature DB >> 22590349

5,5,7,12,14,14-Hexamethyl-1,8-diaza-4,11-diazo-niacyclo-tetra-deca-4,11-diene dichloride trihydrate.

Wafiuddin Ismail, Bohari M Yamin, Jean-Claude Daran.   

Abstract

In the title compound, C(16)H(34)N(4) (2+)·2Cl(-)·3H(2)O, the two protonated N atoms in the macrocyclic ring of the dication are located at diagonally opposite positions. There are two intramolecular N-H⋯N n class="Chemical">hydrogen bonds in the cation. The crystal structure features O-H⋯Cl, O-H⋯O, C-H⋯Cl and N-H⋯Cl hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590349      PMCID: PMC3344587          DOI: 10.1107/S1600536812016649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bi et al. (2008 ▶); He et al. (2010 ▶); Heeg et al. (1981 ▶); Heinlein & Tebbe (1985 ▶); Kennedy et al. (2011 ▶); Rohovec et al. (1999 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the preparation, see: Curtis & Hay (1966 ▶); n class="Disease">Curtis et al. (1975 ▶). For applications of macrocyclic compounds, see: Mittal et al. (2008 ▶); Yatsimirskii (1990 ▶).

Experimental

Crystal data

C16H34N4 2+·2Cl−·3H2O M = 407.42 Triclinic, a = 8.576 (4) Å b = 10.735 (4) Å c = 13.438 (6) Å α = 73.752 (9)° β = 86.085 (9)° γ = 71.886 (8)° V = 1128.7 (8) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 298 K 0.36 × 0.14 × 0.13 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.897, T max = 0.961 11977 measured reflections 3987 independent reflections 2878 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.136 S = 1.07 3987 reflections 248 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812016649/hg5196sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016649/hg5196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H34N42+·2Cl·3H2OZ = 2
Mr = 407.42F(000) = 444
Triclinic, P1Dx = 1.199 Mg m3
Hall symbol: -P 1Melting point = 372.1–372.8 K
a = 8.576 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.735 (4) ÅCell parameters from 2072 reflections
c = 13.438 (6) Åθ = 1.6–25.0°
α = 73.752 (9)°µ = 0.31 mm1
β = 86.085 (9)°T = 298 K
γ = 71.886 (8)°Block, colourless
V = 1128.7 (8) Å30.36 × 0.14 × 0.13 mm
Bruker SMART APEX CCD area-detector diffractometer3987 independent reflections
Radiation source: fine-focus sealed tube2878 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
Detector resolution: 83.66 pixels mm-1θmax = 25.0°, θmin = 1.6°
ω scanh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −12→12
Tmin = 0.897, Tmax = 0.961l = −15→15
11977 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0559P)2 + 0.1922P] where P = (Fo2 + 2Fc2)/3
3987 reflections(Δ/σ)max < 0.001
248 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.54889 (10)0.63892 (9)0.26242 (6)0.0731 (3)
Cl20.91229 (9)0.98055 (8)0.24245 (6)0.0552 (2)
O1W0.2897 (3)0.9092 (3)0.3252 (2)0.1010 (9)
H1W10.20550.91970.29420.151*
H2W10.35230.85130.29980.151*
O2W0.2391 (3)0.5665 (3)0.18015 (19)0.0887 (8)
H1W20.15760.61260.20370.133*
H2W20.31360.57690.20950.133*
O3W0.9133 (3)0.6822 (2)0.26157 (19)0.0869 (8)
H1W30.81920.69090.24420.130*
H2W30.91700.76020.25320.130*
N11.1625 (2)0.3762 (2)0.45434 (15)0.0365 (5)
N20.8331 (3)0.4327 (2)0.42420 (16)0.0336 (5)
H1N20.754 (3)0.494 (3)0.377 (2)0.049 (8)*
H2N20.920 (3)0.463 (2)0.4218 (17)0.032 (7)*
N30.3084 (2)1.0996 (2)0.03415 (16)0.0394 (5)
N40.6102 (3)1.1063 (2)0.08282 (16)0.0335 (5)
H1N40.688 (3)1.061 (3)0.136 (2)0.054 (8)*
H2N40.542 (3)1.063 (2)0.0808 (17)0.026 (6)*
C11.2999 (3)0.4269 (3)0.4597 (2)0.0409 (6)
H1A1.36310.42670.39710.049*
H1B1.37120.36750.51820.049*
C21.1821 (3)0.2496 (3)0.47770 (18)0.0365 (6)
C31.0377 (3)0.2016 (3)0.4681 (2)0.0421 (6)
H3A0.99350.17750.53670.051*
H3B1.07850.11880.44600.051*
C40.8963 (3)0.2984 (2)0.39511 (19)0.0365 (6)
C50.7616 (3)0.4304 (3)0.52835 (19)0.0392 (6)
H5A0.84430.37380.58150.047*
H5B0.67170.39180.53680.047*
C61.3381 (3)0.1384 (3)0.5155 (3)0.0673 (9)
H6A1.40140.16860.55480.101*
H6B1.40000.11580.45730.101*
H6C1.31310.05950.55870.101*
C70.9524 (3)0.3337 (3)0.2835 (2)0.0477 (7)
H7A1.03760.37540.27940.072*
H7B0.86130.39590.23970.072*
H7C0.99360.25220.26120.072*
C80.7565 (3)0.2372 (3)0.4025 (2)0.0503 (7)
H8A0.72800.20890.47380.076*
H8B0.79040.16000.37460.076*
H8C0.66290.30430.36370.076*
C90.2026 (3)1.0191 (3)0.0267 (2)0.0434 (7)
H9A0.12991.0660−0.03340.052*
H9B0.13551.00930.08780.052*
C100.2476 (3)1.2250 (3)0.02649 (19)0.0392 (6)
C110.3598 (3)1.3067 (3)0.0326 (2)0.0446 (7)
H11A0.29451.38830.05110.054*
H11B0.40191.3353−0.03600.054*
C120.5058 (3)1.2355 (2)0.10895 (19)0.0385 (6)
C130.6969 (3)1.1195 (3)−0.01763 (19)0.0418 (6)
H13A0.76781.1756−0.02160.050*
H13B0.61741.1634−0.07450.050*
C140.0690 (4)1.3023 (3)0.0107 (3)0.0748 (10)
H14A0.00551.24050.03490.112*
H14B0.04581.3466−0.06170.112*
H14C0.04091.36940.04890.112*
C150.6104 (3)1.3283 (3)0.1027 (2)0.0520 (7)
H15A0.70931.27820.14340.078*
H15B0.55041.40370.12900.078*
H15C0.63781.36160.03180.078*
C160.4492 (3)1.1912 (3)0.2195 (2)0.0495 (7)
H16A0.54311.14630.26540.074*
H16B0.38711.12960.22310.074*
H16C0.38181.26970.23960.074*
U11U22U33U12U13U23
Cl10.0542 (5)0.0882 (6)0.0592 (5)−0.0075 (4)−0.0185 (4)−0.0037 (4)
Cl20.0491 (4)0.0642 (5)0.0495 (4)−0.0115 (4)−0.0061 (3)−0.0160 (3)
O1W0.0910 (19)0.115 (2)0.105 (2)−0.0405 (17)−0.0193 (16)−0.0280 (17)
O2W0.0793 (17)0.102 (2)0.0905 (18)−0.0236 (15)−0.0020 (14)−0.0391 (15)
O3W0.0810 (17)0.0622 (15)0.112 (2)−0.0201 (13)0.0023 (15)−0.0176 (14)
N10.0298 (11)0.0359 (13)0.0439 (12)−0.0045 (9)−0.0044 (9)−0.0161 (10)
N20.0287 (11)0.0356 (12)0.0376 (12)−0.0097 (10)−0.0039 (9)−0.0109 (10)
N30.0308 (11)0.0423 (13)0.0488 (13)−0.0118 (10)−0.0020 (9)−0.0169 (10)
N40.0335 (11)0.0338 (12)0.0365 (12)−0.0138 (10)−0.0049 (10)−0.0096 (9)
C10.0317 (13)0.0498 (16)0.0449 (15)−0.0112 (12)0.0008 (11)−0.0201 (13)
C20.0345 (14)0.0353 (15)0.0347 (14)−0.0032 (11)0.0008 (11)−0.0101 (11)
C30.0444 (15)0.0318 (14)0.0508 (16)−0.0092 (12)0.0013 (12)−0.0152 (12)
C40.0386 (14)0.0360 (14)0.0412 (14)−0.0130 (11)−0.0019 (11)−0.0177 (11)
C50.0383 (14)0.0452 (15)0.0387 (14)−0.0180 (12)0.0040 (11)−0.0137 (12)
C60.0405 (16)0.0421 (17)0.100 (3)0.0022 (14)−0.0053 (16)−0.0044 (17)
C70.0495 (16)0.0565 (17)0.0431 (16)−0.0176 (14)0.0012 (13)−0.0214 (13)
C80.0513 (17)0.0551 (18)0.0588 (18)−0.0248 (14)0.0019 (14)−0.0283 (15)
C90.0345 (14)0.0575 (17)0.0491 (16)−0.0210 (13)0.0061 (12)−0.0249 (13)
C100.0345 (14)0.0445 (16)0.0371 (14)−0.0064 (12)−0.0045 (11)−0.0139 (12)
C110.0440 (15)0.0339 (14)0.0525 (17)−0.0050 (12)−0.0091 (12)−0.0117 (12)
C120.0394 (14)0.0337 (14)0.0460 (15)−0.0102 (11)−0.0045 (12)−0.0164 (12)
C130.0436 (15)0.0476 (16)0.0419 (15)−0.0244 (13)0.0028 (12)−0.0127 (12)
C140.0463 (18)0.063 (2)0.114 (3)0.0041 (16)−0.0190 (18)−0.041 (2)
C150.0553 (17)0.0420 (16)0.0684 (19)−0.0194 (14)−0.0042 (15)−0.0239 (14)
C160.0498 (16)0.0545 (17)0.0488 (17)−0.0144 (14)−0.0010 (13)−0.0226 (14)
O1W—H1W10.8197C6—H6A0.9600
O1W—H2W10.8227C6—H6B0.9600
O2W—H1W20.8219C6—H6C0.9600
O2W—H2W20.8240C7—H7A0.9600
O3W—H1W30.8259C7—H7B0.9600
O3W—H2W30.8234C7—H7C0.9600
N1—C21.265 (3)C8—H8A0.9600
N1—C11.457 (3)C8—H8B0.9600
N2—C51.486 (3)C8—H8C0.9600
N2—C41.525 (3)C9—C13ii1.504 (4)
N2—H1N20.92 (3)C9—H9A0.9700
N2—H2N20.90 (2)C9—H9B0.9700
N3—C101.260 (3)C10—C141.495 (4)
N3—C91.459 (3)C10—C111.509 (3)
N4—C131.489 (3)C11—C121.532 (3)
N4—C121.518 (3)C11—H11A0.9700
N4—H1N40.93 (3)C11—H11B0.9700
N4—H2N40.86 (2)C12—C151.517 (3)
C1—C5i1.508 (3)C12—C161.522 (4)
C1—H1A0.9700C13—C9ii1.504 (4)
C1—H1B0.9700C13—H13A0.9700
C2—C61.494 (3)C13—H13B0.9700
C2—C31.507 (3)C14—H14A0.9600
C3—C41.523 (3)C14—H14B0.9600
C3—H3A0.9700C14—H14C0.9600
C3—H3B0.9700C15—H15A0.9600
C4—C81.522 (3)C15—H15B0.9600
C4—C71.523 (4)C15—H15C0.9600
C5—C1i1.508 (3)C16—H16A0.9600
C5—H5A0.9700C16—H16B0.9600
C5—H5B0.9700C16—H16C0.9600
H1W1—O1W—H2W198.0H7A—C7—H7C109.5
H1W2—O2W—H2W2101.4H7B—C7—H7C109.5
H1W3—O3W—H2W3105.5C4—C8—H8A109.5
C2—N1—C1120.7 (2)C4—C8—H8B109.5
C5—N2—C4118.08 (19)H8A—C8—H8B109.5
C5—N2—H1N2106.4 (16)C4—C8—H8C109.5
C4—N2—H1N2109.7 (16)H8A—C8—H8C109.5
C5—N2—H2N2106.5 (15)H8B—C8—H8C109.5
C4—N2—H2N2105.8 (15)N3—C9—C13ii110.7 (2)
H1N2—N2—H2N2110 (2)N3—C9—H9A109.5
C10—N3—C9120.1 (2)C13ii—C9—H9A109.5
C13—N4—C12118.30 (19)N3—C9—H9B109.5
C13—N4—H1N4108.3 (17)C13ii—C9—H9B109.5
C12—N4—H1N4106.2 (16)H9A—C9—H9B108.1
C13—N4—H2N4106.8 (15)N3—C10—C14124.9 (2)
C12—N4—H2N4104.3 (15)N3—C10—C11119.1 (2)
H1N4—N4—H2N4113 (2)C14—C10—C11116.0 (2)
N1—C1—C5i110.30 (19)C10—C11—C12116.8 (2)
N1—C1—H1A109.6C10—C11—H11A108.1
C5i—C1—H1A109.6C12—C11—H11A108.1
N1—C1—H1B109.6C10—C11—H11B108.1
C5i—C1—H1B109.6C12—C11—H11B108.1
H1A—C1—H1B108.1H11A—C11—H11B107.3
N1—C2—C6126.2 (2)C15—C12—N4109.0 (2)
N1—C2—C3119.0 (2)C15—C12—C16110.2 (2)
C6—C2—C3114.9 (2)N4—C12—C16106.2 (2)
C2—C3—C4118.2 (2)C15—C12—C11110.4 (2)
C2—C3—H3A107.8N4—C12—C11109.54 (19)
C4—C3—H3A107.8C16—C12—C11111.3 (2)
C2—C3—H3B107.8N4—C13—C9ii109.9 (2)
C4—C3—H3B107.8N4—C13—H13A109.7
H3A—C3—H3B107.1C9ii—C13—H13A109.7
C8—C4—C3110.6 (2)N4—C13—H13B109.7
C8—C4—C7110.3 (2)C9ii—C13—H13B109.7
C3—C4—C7111.4 (2)H13A—C13—H13B108.2
C8—C4—N2108.9 (2)C10—C14—H14A109.5
C3—C4—N2109.49 (19)C10—C14—H14B109.5
C7—C4—N2106.1 (2)H14A—C14—H14B109.5
N2—C5—C1i109.9 (2)C10—C14—H14C109.5
N2—C5—H5A109.7H14A—C14—H14C109.5
C1i—C5—H5A109.7H14B—C14—H14C109.5
N2—C5—H5B109.7C12—C15—H15A109.5
C1i—C5—H5B109.7C12—C15—H15B109.5
H5A—C5—H5B108.2H15A—C15—H15B109.5
C2—C6—H6A109.5C12—C15—H15C109.5
C2—C6—H6B109.5H15A—C15—H15C109.5
H6A—C6—H6B109.5H15B—C15—H15C109.5
C2—C6—H6C109.5C12—C16—H16A109.5
H6A—C6—H6C109.5C12—C16—H16B109.5
H6B—C6—H6C109.5H16A—C16—H16B109.5
C4—C7—H7A109.5C12—C16—H16C109.5
C4—C7—H7B109.5H16A—C16—H16C109.5
H7A—C7—H7B109.5H16B—C16—H16C109.5
C4—C7—H7C109.5
C2—N1—C1—C5i−157.0 (2)C10—N3—C9—C13ii169.2 (2)
C1—N1—C2—C62.0 (4)C9—N3—C10—C140.6 (4)
C1—N1—C2—C3−178.3 (2)C9—N3—C10—C11−179.0 (2)
N1—C2—C3—C422.6 (3)N3—C10—C11—C12−37.1 (4)
C6—C2—C3—C4−157.6 (2)C14—C10—C11—C12143.3 (3)
C2—C3—C4—C8−175.2 (2)C13—N4—C12—C15−55.2 (3)
C2—C3—C4—C761.8 (3)C13—N4—C12—C16−174.0 (2)
C2—C3—C4—N2−55.2 (3)C13—N4—C12—C1165.7 (3)
C5—N2—C4—C858.2 (3)C10—C11—C12—C15177.6 (2)
C5—N2—C4—C3−62.8 (3)C10—C11—C12—N457.5 (3)
C5—N2—C4—C7176.9 (2)C10—C11—C12—C16−59.7 (3)
C4—N2—C5—C1i−177.59 (19)C12—N4—C13—C9ii178.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2N2···N10.90 (3)2.02 (3)2.732 (3)135.6 (18)
N4—H2N4···N30.86 (3)2.03 (3)2.740 (3)140 (2)
O1W—H2W1···Cl10.822.543.343 (4)167
O2W—H2W2···Cl10.822.513.324 (3)168
O3W—H1W3···Cl10.832.533.298 (3)156
O3W—H2W3···Cl20.822.323.138 (3)175
N2—H1N2···Cl10.92 (3)2.28 (3)3.201 (3)177 (3)
N4—H1N4···Cl20.93 (3)2.27 (3)3.178 (3)167 (2)
O1W—H1W1···Cl2iii0.822.493.282 (3)163
O2W—H1W2···O3Wiii0.822.162.955 (4)161
C9—H9B···Cl2iii0.972.753.709 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N2⋯N10.90 (3)2.02 (3)2.732 (3)135.6 (18)
N4—H2N4⋯N30.86 (3)2.03 (3)2.740 (3)140 (2)
O1W—H2W1⋯Cl10.822.543.343 (4)167
O2W—H2W2⋯Cl10.822.513.324 (3)168
O3W—H1W3⋯Cl10.832.533.298 (3)156
O3W—H2W3⋯Cl20.822.323.138 (3)175
N2—H1N2⋯Cl10.92 (3)2.28 (3)3.201 (3)177 (3)
N4—H1N4⋯Cl20.93 (3)2.27 (3)3.178 (3)167 (2)
O1W—H1W1⋯Cl2i0.822.493.282 (3)163
O2W—H1W2⋯O3Wi0.822.162.955 (4)161
C9—H9B⋯Cl2i0.972.753.709 (3)172

Symmetry code: (i) .

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