Literature DB >> 21587468

(meso-5,7,7,12,14,14-Hexamethyl-1,4,8,11-tetra-aza-cyclo-tetra-deca-4,11-diene)nickel(II) dibromide dihydrate.

Xiuli He1, Feifei Shi, Yonghong Lu.   

Abstract

The asymmetric unit of the title compound, [Ni(C(16)H(32)N(4))]Br(2)·2H(2)O, consists of one half [Ni(C(16)H(32)N(4))](2+) cation, one Br(-) anion and one water mol-ecule of crystallization. The Ni(II) ion lies on an inversion centre in a square-planar environment formed by the four macrocyclic ligand N atoms. In the crystal structure, the cations, anions and water mol-ecules are linked via inter-molecular N-H⋯Br and O-H⋯Br hydrogen bonds, forming discrete chains with set-graph motif D(2)D(2) (2)(7)D(2) (1)(3)D(3) (2)(8). The water mol-ecules and Br(-) ions are linked with set-graph motif R(4) (2)(8).

Entities:  

Year:  2010        PMID: 21587468      PMCID: PMC2983119          DOI: 10.1107/S1600536810033714

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ballester et al. (2000 ▶); Heinlein & Tebbe (1985 ▶); Shen et al. (1999 ▶); Szalda et al. (1989 ▶); Wang et al. (2007 ▶); Whimp et al. (1970 ▶); Yang (2005 ▶). For the preparation of the precursor complex C16H32N4·2HBr·2H2O, see: Hay et al. (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

[Ni(C16H32N4)]Br2·2H2O M = 535.02 Monoclinic, a = 8.0349 (16) Å b = 15.619 (3) Å c = 8.9355 (18) Å β = 99.72 (3)° V = 1105.3 (4) Å3 Z = 2 Mo Kα radiation μ = 4.51 mm−1 T = 293 K 0.27 × 0.20 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.831, T max = 0.862 11266 measured reflections 2531 independent reflections 1995 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.099 S = 1.05 2531 reflections 116 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.74 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810033714/bx2296sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033714/bx2296Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C16H32N4)]Br2·2H2OF(000) = 548
Mr = 535.02Dx = 1.608 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3476 reflections
a = 8.0349 (16) Åθ = 2.3–27.5°
b = 15.619 (3) ŵ = 4.51 mm1
c = 8.9355 (18) ÅT = 293 K
β = 99.72 (3)°Prism, brown
V = 1105.3 (4) Å30.27 × 0.20 × 0.20 mm
Z = 2
Rigaku SCXmini diffractometer2531 independent reflections
Radiation source: fine-focus sealed tube1995 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.4°
thin–slice ω scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −20→20
Tmin = 0.831, Tmax = 0.862l = −11→11
11266 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0317P)2 + 1.6713P] where P = (Fo2 + 2Fc2)/3
2531 reflections(Δ/σ)max < 0.001
116 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.74 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.50000.50000.02894 (16)
Br10.69586 (6)0.10330 (3)0.63849 (6)0.06334 (18)
C10.8076 (5)0.5280 (2)0.7876 (4)0.0410 (8)
H1B0.92280.53340.84060.061*
H1C0.73440.53120.86330.061*
C20.7698 (4)0.6042 (2)0.6830 (4)0.0362 (8)
C30.5246 (5)0.6761 (2)0.5232 (5)0.0546 (11)
H3A0.58770.68310.44050.065*
H3B0.53840.72730.58540.065*
C40.3413 (5)0.6610 (2)0.4621 (5)0.0536 (11)
H4A0.27480.66560.54290.064*
H4B0.30030.70300.38460.064*
C50.2117 (4)0.5591 (2)0.2827 (4)0.0343 (7)
C60.8765 (5)0.6034 (3)0.5571 (5)0.0503 (10)
H6A0.85250.55250.49720.075*
H6B0.99410.60440.60130.075*
H6C0.85030.65280.49370.075*
C70.8061 (5)0.6849 (3)0.7812 (5)0.0561 (11)
H7A0.78330.73480.71840.084*
H7B0.92250.68510.82900.084*
H7C0.73530.68530.85760.084*
C80.0896 (5)0.6244 (3)0.2077 (5)0.0528 (10)
H8A0.01470.59840.12520.079*
H8B0.15040.67020.16950.079*
H8C0.02520.64680.28020.079*
N10.5857 (3)0.60021 (16)0.6151 (3)0.0332 (6)
H1A0.53000.60150.69570.040*
N20.3276 (3)0.57404 (17)0.3970 (3)0.0333 (6)
O10.6240 (6)0.8913 (2)0.6616 (5)0.0923 (12)
H1E0.65250.94380.66650.111*
H1F0.54210.88540.58850.111*
U11U22U33U12U13U23
Ni10.0263 (3)0.0225 (3)0.0368 (3)0.0004 (2)0.0016 (2)0.0001 (3)
Br10.0521 (3)0.0655 (3)0.0752 (4)−0.0076 (2)0.0189 (2)−0.0112 (2)
C10.041 (2)0.046 (2)0.0338 (19)0.0010 (16)−0.0019 (16)−0.0021 (16)
C20.0299 (17)0.0349 (19)0.042 (2)−0.0014 (14)0.0011 (15)−0.0035 (15)
C30.057 (3)0.0238 (17)0.075 (3)−0.0031 (17)−0.012 (2)0.0055 (19)
C40.050 (2)0.0277 (19)0.074 (3)0.0112 (17)−0.013 (2)−0.0055 (19)
C50.0321 (17)0.0398 (19)0.0319 (18)0.0022 (14)0.0079 (14)0.0059 (15)
C60.043 (2)0.051 (2)0.061 (3)−0.0022 (18)0.021 (2)0.008 (2)
C70.051 (2)0.041 (2)0.071 (3)−0.0062 (18)−0.004 (2)−0.012 (2)
C80.048 (2)0.057 (3)0.048 (2)0.019 (2)−0.0043 (19)0.003 (2)
N10.0299 (14)0.0264 (14)0.0430 (17)−0.0001 (11)0.0051 (12)−0.0013 (12)
N20.0321 (15)0.0257 (14)0.0407 (16)0.0040 (11)0.0025 (13)0.0021 (12)
O10.103 (3)0.070 (2)0.097 (3)0.013 (2)−0.001 (2)0.019 (2)
Ni1—N21.916 (3)C4—H4B0.9700
Ni1—N2i1.916 (3)C5—N21.282 (4)
Ni1—N11.934 (3)C5—C81.494 (5)
Ni1—N1i1.934 (3)C5—C1i1.494 (5)
C1—C5i1.494 (5)C6—H6A0.9600
C1—C21.513 (5)C6—H6B0.9600
C1—H1B0.9700C6—H6C0.9600
C1—H1C0.9700C7—H7A0.9600
C2—N11.503 (4)C7—H7B0.9600
C2—C61.525 (5)C7—H7C0.9600
C2—C71.535 (5)C8—H8A0.9600
C3—N11.477 (4)C8—H8B0.9600
C3—C41.501 (5)C8—H8C0.9600
C3—H3A0.9700N1—H1A0.9100
C3—H3B0.9700O1—H1E0.8500
C4—N21.475 (5)O1—H1F0.8500
C4—H4A0.9700
N2—Ni1—N2i180.000 (1)N2—C5—C1i120.7 (3)
N2—Ni1—N186.01 (12)C8—C5—C1i114.8 (3)
N2i—Ni1—N193.99 (12)C2—C6—H6A109.5
N2—Ni1—N1i93.99 (12)C2—C6—H6B109.5
N2i—Ni1—N1i86.01 (12)H6A—C6—H6B109.5
N1—Ni1—N1i180.0C2—C6—H6C109.5
C5i—C1—C2117.5 (3)H6A—C6—H6C109.5
C5i—C1—H1B107.9H6B—C6—H6C109.5
C2—C1—H1B107.9C2—C7—H7A109.5
C5i—C1—H1C107.9C2—C7—H7B109.5
C2—C1—H1C107.9H7A—C7—H7B109.5
H1B—C1—H1C107.2C2—C7—H7C109.5
N1—C2—C1107.3 (3)H7A—C7—H7C109.5
N1—C2—C6109.9 (3)H7B—C7—H7C109.5
C1—C2—C6111.7 (3)C5—C8—H8A109.5
N1—C2—C7110.1 (3)C5—C8—H8B109.5
C1—C2—C7107.1 (3)H8A—C8—H8B109.5
C6—C2—C7110.6 (3)C5—C8—H8C109.5
N1—C3—C4106.8 (3)H8A—C8—H8C109.5
N1—C3—H3A110.4H8B—C8—H8C109.5
C4—C3—H3A110.4C3—N1—C2113.8 (3)
N1—C3—H3B110.4C3—N1—Ni1107.4 (2)
C4—C3—H3B110.4C2—N1—Ni1119.1 (2)
H3A—C3—H3B108.6C3—N1—H1A105.1
N2—C4—C3106.9 (3)C2—N1—H1A105.1
N2—C4—H4A110.3Ni1—N1—H1A105.1
C3—C4—H4A110.3C5—N2—C4118.5 (3)
N2—C4—H4B110.3C5—N2—Ni1129.9 (2)
C3—C4—H4B110.3C4—N2—Ni1111.5 (2)
H4A—C4—H4B108.6H1E—O1—H1F108.1
N2—C5—C8124.5 (3)
C5i—C1—C2—N164.1 (4)N2—Ni1—N1—C2−154.2 (3)
C5i—C1—C2—C6−56.4 (4)N2i—Ni1—N1—C225.8 (3)
C5i—C1—C2—C7−177.6 (3)N1i—Ni1—N1—C279 (100)
N1—C3—C4—N2−48.4 (5)C8—C5—N2—C41.2 (5)
C4—C3—N1—C2179.0 (3)C1i—C5—N2—C4180.0 (3)
C4—C3—N1—Ni145.0 (4)C8—C5—N2—Ni1−176.6 (3)
C1—C2—N1—C3173.5 (3)C1i—C5—N2—Ni12.2 (5)
C6—C2—N1—C3−64.9 (4)C3—C4—N2—C5−148.4 (4)
C7—C2—N1—C357.2 (4)C3—C4—N2—Ni129.8 (4)
C1—C2—N1—Ni1−58.4 (3)N2i—Ni1—N2—C5−65 (100)
C6—C2—N1—Ni163.2 (3)N1—Ni1—N2—C5173.9 (3)
C7—C2—N1—Ni1−174.7 (3)N1i—Ni1—N2—C5−6.1 (3)
N2—Ni1—N1—C3−23.2 (3)N2i—Ni1—N2—C4117 (100)
N2i—Ni1—N1—C3156.8 (3)N1—Ni1—N2—C4−4.0 (3)
N1i—Ni1—N1—C3−150 (100)N1i—Ni1—N2—C4176.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br1ii0.912.533.413 (3)164
O1—H1E···Br1iii0.852.533.374 (3)169
O1—H1F···Br1i0.852.553.388 (5)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Br1i0.912.533.413 (3)164
O1—H1E⋯Br1ii0.852.533.374 (3)169
O1—H1F⋯Br1iii0.852.553.388 (5)170

Symmetry codes: (i) ; (ii) ; (iii) .

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