Literature DB >> 26029430

Crystal structure of benzyl 3-(3-methyl-phen-yl)di-thio-carbazate.

NurFadhilah Abdul Aziz1, Enis Nadia Md Yusof1, Thahira Begum S A Ravoof1, Edward R T Tiekink2.   

Abstract

In the title compound, C15H16N2S2, the central CN2S2 residue is almost planar (r.m.s. deviation = 0.0354 Å) and forms dihedral angles of 56.02 (4) and 75.52 (4)° with the phenyl and tolyl rings, respectively; the dihedral angle between the aromatic rings is 81.72 (5)°. The conformation about the N-N bond is gauche [C-N-N-C = -117.48 (15)°]. Overall, the mol-ecule has the shape of the letter L. In the crystal packing, supra-molecular chains along the a axis are formed by N-H⋯S(thione) hydrogen bonds whereby the thione S atom accepts two such bonds. The hydrogen bonding leads to alternating edge-shared eight-membered {⋯HNCS}2 and 10-membered {⋯HNNH⋯S}2 synthons. The chains are connected into layers by phen-yl-tolyl C-H⋯π inter-actions; the layers stack along the c axis with no specific inter-actions between them.

Entities:  

Keywords:  C—H⋯π inter­actions; S-substituted di­thio­carbazate; crystal structure; hydrogen bonding

Year:  2015        PMID: 26029430      PMCID: PMC4438800          DOI: 10.1107/S2056989015004764

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background on the coordination chemistry of di­thio­carbazate derivatives, see: Ravoof et al. (2010 ▸). For the structure of the 2-tolyl analogue, which is superimposable upon the title compound with the exception of the tolyl rings, see: Tayamon et al. (2012 ▸). For the synthesis, see: Tarafder et al. (2002 ▸).

Experimental

Crystal data

C15n class="CellLine">H16N2S2 M = 288.42 Monoclinic, a = 5.9396 (1) Å b = 10.3243 (2) Å c = 23.5474 (5) Å β = 96.952 (2)° V = 1433.36 (5) Å3 Z = 4 Cu Kα radiation μ = 3.25 mm−1 T = 100 K 0.20 × 0.09 × 0.06 mm

Data collection

Oxford Diffraction Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.700, T max = 1.000 18486 measured reflections 2784 independent reflections 2616 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.104 S = 1.01 2784 reflections 179 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.31 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2015 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸), QMOL (Gans & Shalloway, 2001 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) 1, I. DOI: 10.1107/S2056989015004764/hb7378sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015004764/hb7378Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015004764/hb7378Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015004764/hb7378fig1.tif The mol­ecular structure of the title compound showing displacement ellipsoids at the 70% probability level. Click here for additional data file. 2 . DOI: 10.1107/S2056989015004764/hb7378fig2.tif Superimposition of the title compound, shown in red, and the 2-tolyl analogue (blue). The mol­ecules have been superimposed such that the CS2 residues are overlapped. Click here for additional data file. a . DOI: 10.1107/S2056989015004764/hb7378fig3.tif The supra­molecular chain along the a axis sustained by N—H⋯S n class="Chemical">hydrogen bonding, shown as blue dashed lines. Click here for additional data file. a . DOI: 10.1107/S2056989015004764/hb7378fig4.tif A view of the unit-cell contents in projection down the a axis. The N—H⋯S and C—H⋯π inter­actions are shown as blue and purple dashed lines, respectively. CCDC reference: 1052727 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H16N2S2F(000) = 608
Mr = 288.42Dx = 1.337 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
a = 5.9396 (1) ÅCell parameters from 9462 reflections
b = 10.3243 (2) Åθ = 4.7–71.5°
c = 23.5474 (5) ŵ = 3.25 mm1
β = 96.952 (2)°T = 100 K
V = 1433.36 (5) Å3Prism, pale-brown
Z = 40.20 × 0.09 × 0.06 mm
Oxford Diffraction Xcaliber Eos Gemini diffractometer2784 independent reflections
Radiation source: fine-focus sealed tube2616 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 16.1952 pixels mm-1θmax = 71.4°, θmin = 4.7°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→12
Tmin = 0.700, Tmax = 1.000l = −28→28
18486 measured reflections
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0719P)2 + 0.7171P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.015
2784 reflectionsΔρmax = 0.43 e Å3
179 parametersΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S1−0.02626 (6)0.14613 (3)0.57928 (2)0.01811 (14)
S2−0.27407 (6)0.35220 (3)0.50311 (2)0.01879 (14)
N10.1325 (2)0.37365 (13)0.56063 (5)0.0185 (3)
H1N0.145 (3)0.4481 (12)0.5433 (8)0.022*
N20.3251 (2)0.32132 (13)0.59271 (6)0.0190 (3)
H2N0.440 (2)0.319 (2)0.5728 (7)0.023*
C1−0.0490 (3)0.29984 (14)0.54689 (6)0.0166 (3)
C2−0.2885 (3)0.06797 (15)0.54854 (7)0.0220 (3)
H2A−0.42050.12310.55410.026*
H2B−0.28670.05410.50700.026*
C3−0.3054 (3)−0.06035 (15)0.57852 (6)0.0183 (3)
C4−0.4833 (3)−0.08287 (17)0.61097 (7)0.0232 (3)
H4−0.5904−0.01630.61520.028*
C5−0.5047 (3)−0.20200 (18)0.63711 (7)0.0277 (4)
H5−0.6282−0.21710.65840.033*
C6−0.3471 (3)−0.29890 (17)0.63237 (7)0.0289 (4)
H6−0.3606−0.37990.65080.035*
C7−0.1689 (3)−0.27671 (16)0.60040 (7)0.0283 (4)
H7−0.0606−0.34300.59680.034*
C8−0.1488 (3)−0.15806 (16)0.57376 (7)0.0232 (4)
H8−0.0263−0.14370.55200.028*
C90.3914 (3)0.37731 (15)0.64746 (6)0.0182 (3)
C100.2516 (3)0.45821 (15)0.67466 (6)0.0194 (3)
H100.10500.47960.65630.023*
C110.3250 (3)0.50851 (16)0.72891 (7)0.0231 (3)
C120.5383 (3)0.47294 (18)0.75585 (7)0.0266 (4)
H120.58970.50530.79290.032*
C130.6756 (3)0.39062 (18)0.72868 (7)0.0270 (4)
H130.81970.36620.74760.032*
C140.6050 (3)0.34342 (16)0.67428 (7)0.0220 (3)
H140.70140.28860.65560.026*
C150.1791 (3)0.60228 (19)0.75688 (8)0.0304 (4)
H15A0.11340.55860.78790.046*
H15B0.05710.63390.72850.046*
H15C0.27180.67560.77240.046*
U11U22U33U12U13U23
S10.0189 (2)0.0149 (2)0.0195 (2)−0.00064 (12)−0.00198 (15)0.00260 (13)
S20.0174 (2)0.0191 (2)0.0192 (2)0.00001 (13)−0.00053 (15)0.00490 (13)
N10.0193 (6)0.0165 (6)0.0189 (6)−0.0008 (5)−0.0012 (5)0.0036 (5)
N20.0166 (6)0.0212 (7)0.0189 (6)0.0010 (5)0.0009 (5)0.0006 (5)
C10.0204 (7)0.0157 (7)0.0141 (6)0.0019 (6)0.0037 (5)−0.0002 (5)
C20.0194 (7)0.0187 (8)0.0259 (8)−0.0037 (6)−0.0055 (6)0.0019 (6)
C30.0202 (7)0.0177 (7)0.0160 (7)−0.0026 (6)−0.0020 (6)−0.0007 (6)
C40.0188 (7)0.0288 (9)0.0214 (7)0.0000 (6)−0.0001 (6)−0.0016 (7)
C50.0227 (8)0.0404 (10)0.0197 (8)−0.0116 (7)0.0013 (6)0.0046 (7)
C60.0350 (9)0.0233 (9)0.0265 (8)−0.0089 (7)−0.0046 (7)0.0073 (7)
C70.0344 (9)0.0183 (8)0.0316 (9)0.0033 (7)0.0019 (7)0.0023 (7)
C80.0256 (8)0.0218 (8)0.0228 (8)0.0002 (6)0.0055 (6)0.0010 (6)
C90.0191 (7)0.0178 (7)0.0174 (7)−0.0044 (6)0.0009 (6)0.0038 (6)
C100.0180 (7)0.0192 (7)0.0206 (7)−0.0017 (6)0.0012 (6)0.0040 (6)
C110.0266 (8)0.0224 (8)0.0211 (7)−0.0035 (6)0.0063 (6)0.0019 (6)
C120.0288 (8)0.0333 (9)0.0169 (7)−0.0065 (7)−0.0006 (6)0.0005 (7)
C130.0217 (8)0.0344 (9)0.0233 (8)−0.0016 (7)−0.0036 (6)0.0057 (7)
C140.0194 (8)0.0235 (8)0.0230 (8)0.0006 (6)0.0021 (6)0.0041 (6)
C150.0353 (9)0.0319 (10)0.0248 (8)−0.0013 (8)0.0070 (7)−0.0059 (7)
S1—C11.7588 (15)C6—H60.9500
S1—C21.8245 (16)C7—C81.388 (2)
S2—C11.6761 (15)C7—H70.9500
N1—C11.328 (2)C8—H80.9500
N1—N21.4007 (18)C9—C101.388 (2)
N1—H1N0.878 (9)C9—C141.392 (2)
N2—C91.424 (2)C10—C111.399 (2)
N2—H2N0.875 (9)C10—H100.9500
C2—C31.510 (2)C11—C121.396 (2)
C2—H2A0.9900C11—C151.503 (2)
C2—H2B0.9900C12—C131.386 (3)
C3—C81.386 (2)C12—H120.9500
C3—C41.397 (2)C13—C141.387 (2)
C4—C51.388 (3)C13—H130.9500
C4—H40.9500C14—H140.9500
C5—C61.384 (3)C15—H15A0.9800
C5—H50.9500C15—H15B0.9800
C6—C71.390 (3)C15—H15C0.9800
C1—S1—C2102.12 (7)C8—C7—H7119.9
C1—N1—N2119.73 (13)C6—C7—H7119.9
C1—N1—H1N120.1 (13)C3—C8—C7120.68 (15)
N2—N1—H1N118.6 (13)C3—C8—H8119.7
N1—N2—C9116.74 (13)C7—C8—H8119.7
N1—N2—H2N111.2 (13)C10—C9—C14120.35 (15)
C9—N2—H2N110.3 (13)C10—C9—N2123.14 (14)
N1—C1—S2121.90 (11)C14—C9—N2116.47 (14)
N1—C1—S1113.26 (11)C9—C10—C11120.48 (14)
S2—C1—S1124.84 (9)C9—C10—H10119.8
C3—C2—S1107.71 (10)C11—C10—H10119.8
C3—C2—H2A110.2C12—C11—C10118.85 (15)
S1—C2—H2A110.2C12—C11—C15120.66 (15)
C3—C2—H2B110.2C10—C11—C15120.46 (15)
S1—C2—H2B110.2C13—C12—C11120.25 (15)
H2A—C2—H2B108.5C13—C12—H12119.9
C8—C3—C4118.88 (15)C11—C12—H12119.9
C8—C3—C2121.17 (14)C12—C13—C14120.85 (15)
C4—C3—C2119.94 (14)C12—C13—H13119.6
C5—C4—C3120.39 (16)C14—C13—H13119.6
C5—C4—H4119.8C13—C14—C9119.18 (16)
C3—C4—H4119.8C13—C14—H14120.4
C6—C5—C4120.40 (15)C9—C14—H14120.4
C6—C5—H5119.8C11—C15—H15A109.5
C4—C5—H5119.8C11—C15—H15B109.5
C5—C6—C7119.42 (15)H15A—C15—H15B109.5
C5—C6—H6120.3C11—C15—H15C109.5
C7—C6—H6120.3H15A—C15—H15C109.5
C8—C7—C6120.22 (16)H15B—C15—H15C109.5
C1—N1—N2—C9−117.48 (15)C2—C3—C8—C7−178.47 (15)
N2—N1—C1—S2−173.66 (10)C6—C7—C8—C3−0.1 (3)
N2—N1—C1—S16.62 (17)N1—N2—C9—C1014.4 (2)
C2—S1—C1—N1−176.50 (11)N1—N2—C9—C14−167.76 (13)
C2—S1—C1—S23.79 (12)C14—C9—C10—C111.1 (2)
C1—S1—C2—C3−173.00 (11)N2—C9—C10—C11178.89 (14)
S1—C2—C3—C8−64.36 (17)C9—C10—C11—C12−1.8 (2)
S1—C2—C3—C4116.71 (14)C9—C10—C11—C15176.39 (15)
C8—C3—C4—C5−1.1 (2)C10—C11—C12—C130.9 (2)
C2—C3—C4—C5177.82 (14)C15—C11—C12—C13−177.29 (16)
C3—C4—C5—C61.4 (2)C11—C12—C13—C140.7 (3)
C4—C5—C6—C7−1.0 (3)C12—C13—C14—C9−1.4 (3)
C5—C6—C7—C80.4 (3)C10—C9—C14—C130.5 (2)
C4—C3—C8—C70.5 (2)N2—C9—C14—C13−177.39 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S2i0.88 (1)2.50 (2)3.3581 (13)167 (2)
N2—H2N···S2ii0.87 (1)2.52 (1)3.3819 (13)167 (2)
C6—H6···Cg1iii0.952.613.5314 (19)161
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NS2i 0.88(1)2.50(2)3.3581(13)167(2)
N2H2NS2ii 0.87(1)2.52(1)3.3819(13)167(2)
C6H6Cg1iii 0.952.613.5314(19)161

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Qmol: a program for molecular visualization on Windows-based PCs.

Authors:  J D Gans; D Shalloway
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

2.  Benzyl 3-(2-methyl-phen-yl)dithio-carbazate.

Authors:  Shahedeh Tayamon; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  3 in total

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