Literature DB >> 22590215

10α-Hy-droxy-13-{[4-(2-hy-droxy-phen-yl)piperazin-1-yl]meth-yl}-4,9-dimethyl-3,8,15-trioxatetra-cyclo-[10.3.0.0(2,4).0(7,9)]penta-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Lahcen El Ammari, Mina Adil, Moha Berraho.   

Abstract

The title compound, C(25)H(34)N(2)O(6), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The ten-membered ring adopts an approximate chair-chair conformation, while the piperazine ring displays a near regular chair conformation and the five-membered ring an envelope conformation with the C atom closest to the hy-droxy group forming the flap. The mol-ecular conformation is stabilized by an O-H⋯N hydrogen bond, which generates an S(7) loop, and the crystal structure features weak C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22590215      PMCID: PMC3344453          DOI: 10.1107/S1600536812013876

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea adiata, see: Abdel Sattar et al. (1996 ▶); El Hassany et al. (2004 ▶); Qureshi et al.(1990 ▶). For the reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶); Neukirch et al. (2003 ▶); Neelakantan et al. (2009 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For the synthesis, see: Moumou et al. (2010 ▶).

Experimental

Crystal data

C25H34N2O6 M = 458.54 Orthorhombic, a = 8.0978 (2) Å b = 10.3660 (3) Å c = 28.8194 (8) Å V = 2419.15 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 180 K 0.27 × 0.21 × 0.06 mm

Data collection

Agilent Xcalibur Sapphire1 long-nozzle diffractometer 27441 measured reflections 2829 independent reflections 2540 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.05 2829 reflections 302 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013876/bt5864sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013876/bt5864Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013876/bt5864Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H34N2O6F(000) = 984
Mr = 458.54Dx = 1.259 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4934 reflections
a = 8.0978 (2) Åθ = 2.4–26.4°
b = 10.3660 (3) ŵ = 0.09 mm1
c = 28.8194 (8) ÅT = 180 K
V = 2419.15 (11) Å3Platelet, colourless
Z = 40.27 × 0.21 × 0.06 mm
Agilent Xcalibur Sapphire1 long-nozzle diffractometer2540 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
Graphite monochromatorθmax = 26.4°, θmin = 2.4°
Detector resolution: 8.2632 pixels mm-1h = −10→10
ω scank = −12→12
27441 measured reflectionsl = −35→36
2829 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0508P)2 + 0.396P] where P = (Fo2 + 2Fc2)/3
2829 reflections(Δ/σ)max = 0.002
302 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9344 (2)0.90928 (19)−0.02860 (7)0.0367 (4)
H10.88500.8325−0.04280.044*
C20.9628 (2)1.01210 (18)−0.06365 (7)0.0365 (4)
H21.00981.0913−0.05060.044*
C30.8665 (2)1.0334 (2)−0.10613 (7)0.0396 (4)
C40.8570 (3)1.1717 (2)−0.12197 (7)0.0445 (5)
H4A0.84641.1734−0.15550.053*
H4B0.95931.2150−0.11390.053*
C50.7118 (3)1.2463 (2)−0.10047 (8)0.0462 (5)
H5A0.73271.3380−0.10370.055*
H5B0.61231.2265−0.11780.055*
C60.6825 (2)1.21618 (18)−0.05000 (7)0.0379 (4)
H60.78281.2067−0.03130.045*
C70.5359 (2)1.1463 (2)−0.03197 (7)0.0396 (4)
C80.5440 (2)1.06794 (19)0.01276 (7)0.0394 (4)
H80.43061.04430.02110.047*
C90.6417 (2)0.94191 (19)0.00614 (7)0.0372 (4)
H9A0.61980.9086−0.02470.045*
H9B0.60220.87870.02830.045*
C100.8304 (2)0.95749 (18)0.01223 (7)0.0335 (4)
H100.85301.04980.01580.040*
C111.0873 (3)0.8737 (2)0.03774 (8)0.0446 (5)
C120.9101 (3)0.8883 (2)0.05318 (7)0.0412 (5)
H120.86080.80240.05610.049*
C130.9013 (3)0.9554 (3)0.10023 (7)0.0496 (5)
H13A0.97260.91010.12180.060*
H13B0.94351.04250.09700.060*
C140.7331 (3)0.9440 (2)−0.12263 (8)0.0483 (5)
H14A0.73790.9369−0.15580.073*
H14B0.62730.9775−0.11360.073*
H14C0.74860.8604−0.10900.073*
C150.3946 (3)1.1047 (3)−0.06229 (9)0.0563 (6)
H15A0.29261.1346−0.04920.084*
H15B0.39281.0123−0.06430.084*
H15C0.40821.1407−0.09270.084*
C160.6773 (3)0.8326 (2)0.13338 (8)0.0527 (6)
H16A0.75480.79540.15530.063*
H16B0.67410.77730.10620.063*
C170.5082 (3)0.8371 (2)0.15515 (8)0.0536 (6)
H17A0.42880.86970.13280.064*
H17B0.47460.75080.16410.064*
C180.5649 (4)1.0502 (2)0.18283 (8)0.0589 (6)
H18A0.56781.10510.21010.071*
H18B0.48731.08700.16090.071*
C190.7342 (4)1.0444 (2)0.16120 (8)0.0562 (6)
H19A0.76891.13080.15260.067*
H19B0.81251.01120.18370.067*
C200.3698 (3)0.9137 (3)0.22451 (7)0.0543 (6)
C210.2250 (4)0.8504 (4)0.21250 (9)0.0761 (9)
H210.21590.81360.18320.091*
C220.3734 (4)0.9667 (3)0.26908 (8)0.0709 (8)
C230.0932 (4)0.8409 (5)0.24322 (11)0.0987 (13)
H23−0.00190.79680.23450.118*
C240.1028 (5)0.8958 (5)0.28612 (11)0.1027 (14)
H240.01370.89060.30640.123*
C250.2443 (5)0.9589 (4)0.29923 (10)0.0941 (12)
H250.25190.99600.32850.113*
N10.7348 (2)0.96134 (17)0.11978 (6)0.0455 (4)
N20.5106 (3)0.92072 (19)0.19603 (6)0.0495 (5)
O10.5493 (2)1.28526 (14)−0.02754 (5)0.0491 (4)
O21.03111 (18)0.97758 (15)−0.10802 (5)0.0469 (4)
O31.09685 (17)0.88006 (14)−0.00863 (5)0.0451 (4)
O41.2079 (2)0.85660 (19)0.06106 (7)0.0647 (5)
O50.6083 (2)1.14333 (15)0.04947 (5)0.0477 (4)
H50.62671.09690.07190.071*
O60.5154 (3)1.0222 (2)0.28351 (6)0.0802 (7)
H6A0.52091.09600.27330.120*
U11U22U33U12U13U23
C10.0321 (9)0.0299 (9)0.0479 (11)0.0032 (8)−0.0011 (8)−0.0058 (8)
C20.0312 (9)0.0324 (9)0.0459 (11)0.0008 (8)0.0036 (8)−0.0072 (8)
C30.0390 (10)0.0366 (10)0.0432 (10)0.0039 (9)0.0050 (9)−0.0047 (9)
C40.0502 (12)0.0408 (11)0.0424 (11)−0.0014 (10)0.0038 (10)0.0026 (9)
C50.0512 (12)0.0354 (10)0.0520 (12)0.0050 (10)−0.0030 (10)0.0036 (9)
C60.0368 (9)0.0273 (9)0.0495 (11)0.0038 (8)−0.0024 (9)−0.0031 (8)
C70.0292 (9)0.0368 (10)0.0528 (11)0.0055 (8)0.0020 (9)−0.0069 (9)
C80.0286 (9)0.0387 (11)0.0510 (11)−0.0012 (8)0.0058 (9)−0.0084 (9)
C90.0334 (9)0.0302 (9)0.0481 (11)−0.0046 (8)0.0032 (8)−0.0024 (9)
C100.0338 (9)0.0247 (8)0.0422 (10)−0.0027 (8)0.0003 (8)−0.0024 (8)
C110.0449 (11)0.0295 (10)0.0595 (14)0.0035 (9)−0.0052 (10)0.0031 (9)
C120.0423 (11)0.0317 (10)0.0497 (12)−0.0038 (9)−0.0032 (9)0.0042 (9)
C130.0526 (12)0.0487 (12)0.0476 (12)−0.0130 (11)−0.0063 (10)0.0030 (10)
C140.0514 (12)0.0449 (12)0.0486 (12)0.0008 (11)−0.0045 (10)−0.0093 (10)
C150.0347 (10)0.0661 (15)0.0681 (15)0.0008 (11)−0.0093 (11)−0.0049 (13)
C160.0673 (15)0.0400 (11)0.0507 (13)−0.0082 (11)0.0034 (11)−0.0016 (10)
C170.0652 (15)0.0479 (12)0.0477 (12)−0.0124 (12)0.0016 (11)−0.0064 (10)
C180.0862 (18)0.0468 (13)0.0437 (12)−0.0020 (14)0.0024 (12)−0.0055 (10)
C190.0812 (17)0.0421 (12)0.0453 (12)−0.0141 (13)−0.0024 (12)−0.0038 (10)
C200.0631 (14)0.0615 (15)0.0383 (11)0.0001 (12)−0.0038 (10)0.0010 (10)
C210.0652 (17)0.109 (2)0.0540 (15)−0.0100 (18)0.0020 (13)−0.0159 (16)
C220.0793 (18)0.093 (2)0.0400 (12)−0.0080 (18)−0.0029 (13)−0.0030 (14)
C230.0665 (18)0.152 (4)0.077 (2)−0.017 (2)0.0028 (16)−0.017 (2)
C240.080 (2)0.166 (4)0.0622 (18)−0.005 (3)0.0191 (17)−0.009 (2)
C250.099 (2)0.136 (3)0.0474 (15)−0.010 (3)0.0122 (16)−0.0135 (19)
N10.0591 (11)0.0380 (9)0.0395 (9)−0.0088 (9)−0.0025 (8)−0.0001 (8)
N20.0633 (12)0.0474 (10)0.0377 (9)−0.0045 (9)−0.0025 (9)−0.0010 (8)
O10.0493 (8)0.0347 (7)0.0632 (9)0.0146 (7)0.0045 (8)−0.0050 (7)
O20.0422 (8)0.0502 (9)0.0483 (8)0.0074 (7)0.0107 (7)−0.0054 (7)
O30.0345 (7)0.0412 (8)0.0595 (9)0.0091 (6)0.0002 (7)0.0014 (7)
O40.0506 (10)0.0639 (11)0.0795 (12)0.0140 (9)−0.0195 (9)0.0087 (10)
O50.0556 (9)0.0409 (8)0.0464 (8)0.0056 (7)0.0029 (7)−0.0096 (7)
O60.0937 (15)0.1145 (18)0.0323 (8)−0.0403 (14)−0.0040 (9)−0.0159 (10)
C1—O31.468 (2)C13—H13A0.9700
C1—C21.486 (3)C13—H13B0.9700
C1—C101.531 (3)C14—H14A0.9600
C1—H10.9800C14—H14B0.9600
C2—O21.438 (2)C14—H14C0.9600
C2—C31.468 (3)C15—H15A0.9600
C2—H20.9800C15—H15B0.9600
C3—O21.454 (2)C15—H15C0.9600
C3—C141.501 (3)C16—N11.467 (3)
C3—C41.507 (3)C16—C171.507 (4)
C4—C51.538 (3)C16—H16A0.9700
C4—H4A0.9700C16—H16B0.9700
C4—H4B0.9700C17—N21.463 (3)
C5—C61.507 (3)C17—H17A0.9700
C5—H5A0.9700C17—H17B0.9700
C5—H5B0.9700C18—N21.462 (3)
C6—O11.447 (2)C18—C191.507 (4)
C6—C71.484 (3)C18—H18A0.9700
C6—H60.9800C18—H18B0.9700
C7—O11.450 (3)C19—N11.472 (3)
C7—C151.503 (3)C19—H19A0.9700
C7—C81.525 (3)C19—H19B0.9700
C8—O51.415 (2)C20—C211.387 (4)
C8—C91.539 (3)C20—C221.397 (3)
C8—H80.9800C20—N21.407 (3)
C9—C101.546 (3)C21—C231.390 (4)
C9—H9A0.9700C21—H210.9300
C9—H9B0.9700C22—O61.352 (4)
C10—C121.524 (3)C22—C251.362 (4)
C10—H100.9800C23—C241.363 (5)
C11—O41.198 (3)C23—H230.9300
C11—O31.340 (3)C24—C251.372 (5)
C11—C121.510 (3)C24—H240.9300
C12—C131.525 (3)C25—H250.9300
C12—H120.9800O5—H50.8200
C13—N11.463 (3)O6—H6A0.8200
O3—C1—C2106.00 (15)N1—C13—H13A108.8
O3—C1—C10105.01 (15)C12—C13—H13A108.8
C2—C1—C10111.93 (16)N1—C13—H13B108.8
O3—C1—H1111.2C12—C13—H13B108.8
C2—C1—H1111.2H13A—C13—H13B107.7
C10—C1—H1111.2C3—C14—H14A109.5
O2—C2—C360.01 (12)C3—C14—H14B109.5
O2—C2—C1119.04 (16)H14A—C14—H14B109.5
C3—C2—C1126.31 (18)C3—C14—H14C109.5
O2—C2—H2113.6H14A—C14—H14C109.5
C3—C2—H2113.6H14B—C14—H14C109.5
C1—C2—H2113.6C7—C15—H15A109.5
O2—C3—C258.99 (12)C7—C15—H15B109.5
O2—C3—C14113.75 (17)H15A—C15—H15B109.5
C2—C3—C14123.63 (19)C7—C15—H15C109.5
O2—C3—C4114.47 (17)H15A—C15—H15C109.5
C2—C3—C4115.01 (18)H15B—C15—H15C109.5
C14—C3—C4117.03 (19)N1—C16—C17111.8 (2)
C3—C4—C5113.32 (18)N1—C16—H16A109.3
C3—C4—H4A108.9C17—C16—H16A109.3
C5—C4—H4A108.9N1—C16—H16B109.3
C3—C4—H4B108.9C17—C16—H16B109.3
C5—C4—H4B108.9H16A—C16—H16B107.9
H4A—C4—H4B107.7N2—C17—C16110.0 (2)
C6—C5—C4113.91 (18)N2—C17—H17A109.7
C6—C5—H5A108.8C16—C17—H17A109.7
C4—C5—H5A108.8N2—C17—H17B109.7
C6—C5—H5B108.8C16—C17—H17B109.7
C4—C5—H5B108.8H17A—C17—H17B108.2
H5A—C5—H5B107.7N2—C18—C19110.2 (2)
O1—C6—C759.28 (12)N2—C18—H18A109.6
O1—C6—C5116.54 (17)C19—C18—H18A109.6
C7—C6—C5124.42 (19)N2—C18—H18B109.6
O1—C6—H6114.9C19—C18—H18B109.6
C7—C6—H6114.9H18A—C18—H18B108.1
C5—C6—H6114.9N1—C19—C18111.2 (2)
O1—C7—C659.10 (13)N1—C19—H19A109.4
O1—C7—C15113.14 (19)C18—C19—H19A109.4
C6—C7—C15123.0 (2)N1—C19—H19B109.4
O1—C7—C8116.85 (17)C18—C19—H19B109.4
C6—C7—C8121.45 (17)H19A—C19—H19B108.0
C15—C7—C8111.79 (19)C21—C20—C22115.7 (3)
O5—C8—C7110.71 (17)C21—C20—N2124.3 (2)
O5—C8—C9111.84 (17)C22—C20—N2119.9 (3)
C7—C8—C9111.69 (16)C20—C21—C23121.6 (3)
O5—C8—H8107.5C20—C21—H21119.2
C7—C8—H8107.5C23—C21—H21119.2
C9—C8—H8107.5O6—C22—C25118.8 (3)
C8—C9—C10113.91 (16)O6—C22—C20117.9 (3)
C8—C9—H9A108.8C25—C22—C20123.1 (3)
C10—C9—H9A108.8C24—C23—C21120.3 (3)
C8—C9—H9B108.8C24—C23—H23119.9
C10—C9—H9B108.8C21—C23—H23119.9
H9A—C9—H9B107.7C23—C24—C25119.7 (3)
C12—C10—C1102.06 (15)C23—C24—H24120.1
C12—C10—C9117.19 (17)C25—C24—H24120.1
C1—C10—C9114.97 (16)C22—C25—C24119.6 (3)
C12—C10—H10107.3C22—C25—H25120.2
C1—C10—H10107.3C24—C25—H25120.2
C9—C10—H10107.3C13—N1—C16110.91 (19)
O4—C11—O3121.3 (2)C13—N1—C19109.86 (18)
O4—C11—C12128.6 (2)C16—N1—C19108.35 (16)
O3—C11—C12110.09 (18)C20—N2—C18116.3 (2)
C11—C12—C10102.80 (17)C20—N2—C17115.4 (2)
C11—C12—C13110.61 (18)C18—N2—C17109.78 (17)
C10—C12—C13117.03 (17)C6—O1—C761.63 (12)
C11—C12—H12108.7C2—O2—C361.00 (13)
C10—C12—H12108.7C11—O3—C1110.46 (16)
C13—C12—H12108.7C8—O5—H5109.5
N1—C13—C12113.86 (18)C22—O6—H6A109.5
D—H···AD—HH···AD···AD—H···A
O5—H5···N10.822.152.952 (2)164
C1—H1···O4i0.982.493.440 (3)165
C10—H10···O1ii0.982.363.232 (2)148
C18—H18A···O60.972.322.943 (3)121
C25—H25···O2iii0.932.553.299 (4)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5⋯N10.822.152.952 (2)164
C1—H1⋯O4i0.982.493.440 (3)165
C10—H10⋯O1ii0.982.363.232 (2)148
C18—H18A⋯O60.972.322.943 (3)121
C25—H25⋯O2iii0.932.553.299 (4)138

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

4.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

5.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

6.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

7.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

8.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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