Literature DB >> 22590140

trans-Diaqua-bis-[5-(pyridine-3-carboxamido)-tetra-zolido-κ(2)O,N(1)]zinc dihydrate.

Fang Li1, Xiang-Ping Ou, Chang-Cang Huang.   

Abstract

The title compound, [Zn(C(7)H(5)N(6)O)(2)(H(2)O)(2)]·2H(2)O, consists of one Zn(II) ion located on the crystallographic inversion centre, two 5-(pyridine-3-carboxamido)-tetra-zolide ligands, two coordinated water mol-ecules and two free water mol-ecules. The Zn(II) ion adopts a slightly distorted octa-hedral coordination geometry formed by the N,O-chelating ligands and two O water atoms. The pyridine N atoms are not coordinated. In the crystal, complex mol-ecules are connected by N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22590140      PMCID: PMC3344374          DOI: 10.1107/S1600536812014997

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical applications of amide derivatives, see: Foster et al. (1999 ▶); Rauko et al. (2001 ▶); Rowland et al. (2001 ▶, 2002 ▶). For our recent work on the design and synthesis of amide complexes, see: Wang et al. (2010 ▶). For the use of nicotinoyl­amino in building novel complexes, see: Aakeröy et al. (2001 ▶); Li et al. (2008 ▶); Moncol et al. (2007 ▶); Kumar et al. (2005 ▶). For ZnN and Zn—O bond lengths in related structures, see: Armstrong et al. (2003 ▶); Liu et al. (2009 ▶).

Experimental

Crystal data

[Zn(C7H5N6O)2(H2O)2]·2H2O M = 515.79 Monoclinic, a = 7.2576 (15) Å b = 12.008 (2) Å c = 11.917 (2) Å β = 97.76 (3)° V = 1029.1 (3) Å3 Z = 2 Mo Kα radiation μ = 1.26 mm−1 T = 293 K 0.22 × 0.15 × 0.1 mm

Data collection

Rigaku Saturn 724 CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2002 ▶) T min = 0.819, T max = 1.000 8464 measured reflections 2374 independent reflections 2188 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.100 S = 1.19 2374 reflections 165 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812014997/hg5200sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812014997/hg5200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H5N6O)2(H2O)2]·2H2OF(000) = 528
Mr = 515.79Dx = 1.665 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3552 reflections
a = 7.2576 (15) Åθ = 3.1–27.5°
b = 12.008 (2) ŵ = 1.26 mm1
c = 11.917 (2) ÅT = 293 K
β = 97.76 (3)°Prism, colorless
V = 1029.1 (3) Å30.22 × 0.15 × 0.1 mm
Z = 2
Rigaku Saturn 724 CCD area-detector diffractometer2374 independent reflections
Radiation source: fine-focus sealed tube2188 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
scintillation counter scansθmax = 27.6°, θmin = 3.3°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002)h = −9→7
Tmin = 0.819, Tmax = 1.000k = −15→14
8464 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.0354P)2 + 0.6596P] where P = (Fo2 + 2Fc2)/3
2374 reflections(Δ/σ)max = 0.042
165 parametersΔρmax = 0.24 e Å3
6 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.00000.00000.00000.02817 (14)
O10.1128 (2)0.16405 (14)−0.01319 (16)0.0348 (4)
C50.2633 (3)0.3319 (2)0.0481 (2)0.0274 (5)
C70.3943 (3)0.0364 (2)0.1181 (2)0.0259 (5)
C60.2446 (3)0.2086 (2)0.0460 (2)0.0281 (5)
N40.5071 (3)−0.12357 (19)0.1550 (2)0.0364 (5)
N50.5487 (3)−0.01344 (18)0.1645 (2)0.0342 (5)
N60.3527 (3)0.49961 (18)0.1502 (2)0.0370 (5)
C40.3380 (4)0.3890 (2)0.1451 (2)0.0333 (6)
H120.37990.34800.20970.040*
C30.1991 (4)0.3936 (2)−0.0474 (2)0.0349 (6)
H130.14480.3584−0.11320.042*
C10.2944 (4)0.5576 (2)0.0566 (2)0.0377 (6)
H150.30640.63470.05860.045*
C20.2168 (4)0.5077 (2)−0.0436 (3)0.0415 (7)
H160.17720.5506−0.10720.050*
N10.3798 (3)0.15158 (17)0.11143 (18)0.0309 (5)
H60.46370.18990.15230.037*
N30.3383 (3)−0.13789 (18)0.1054 (2)0.0344 (5)
N20.2617 (3)−0.03656 (18)0.08075 (18)0.0279 (4)
O20.0833 (3)−0.05113 (17)−0.15682 (16)0.0340 (4)
H2A0.186 (2)−0.025 (3)−0.169 (3)0.066 (12)*
H2B0.011 (3)−0.037 (3)−0.2160 (16)0.061 (11)*
O30.7255 (3)0.25284 (18)0.1891 (2)0.0517 (6)
H3A0.801 (4)0.208 (3)0.166 (3)0.078*
H3B0.787 (4)0.287 (3)0.243 (2)0.078*
U11U22U33U12U13U23
Zn10.0224 (2)0.0244 (2)0.0352 (2)−0.00194 (15)−0.00520 (16)−0.00004 (16)
O10.0314 (10)0.0247 (9)0.0444 (11)−0.0060 (7)−0.0087 (8)0.0033 (8)
C50.0270 (12)0.0251 (12)0.0292 (12)−0.0025 (9)0.0006 (10)−0.0005 (10)
C70.0250 (12)0.0264 (11)0.0248 (11)−0.0005 (9)−0.0015 (9)0.0007 (9)
C60.0298 (13)0.0257 (12)0.0284 (12)−0.0027 (10)0.0020 (10)0.0018 (10)
N40.0299 (12)0.0346 (12)0.0426 (13)0.0043 (9)−0.0025 (10)0.0052 (10)
N50.0297 (12)0.0320 (12)0.0382 (13)−0.0006 (9)−0.0055 (9)0.0048 (9)
N60.0414 (14)0.0302 (12)0.0374 (12)−0.0022 (10)−0.0019 (10)−0.0053 (9)
C40.0377 (15)0.0295 (13)0.0313 (13)−0.0005 (11)−0.0007 (11)−0.0019 (10)
C30.0400 (15)0.0312 (13)0.0312 (13)−0.0004 (11)−0.0030 (11)−0.0018 (10)
C10.0411 (16)0.0248 (13)0.0466 (17)−0.0026 (11)0.0042 (13)−0.0005 (11)
C20.0529 (18)0.0323 (15)0.0372 (15)0.0014 (12)−0.0014 (13)0.0083 (11)
N10.0290 (11)0.0254 (10)0.0348 (11)−0.0046 (9)−0.0083 (9)−0.0016 (9)
N30.0317 (12)0.0257 (11)0.0437 (13)0.0020 (9)−0.0026 (10)0.0036 (9)
N20.0253 (11)0.0243 (10)0.0325 (11)−0.0001 (8)−0.0023 (9)0.0008 (8)
O20.0280 (10)0.0396 (11)0.0332 (10)−0.0005 (8)−0.0005 (8)−0.0006 (8)
O30.0387 (12)0.0347 (12)0.0765 (17)−0.0038 (9)−0.0109 (11)−0.0120 (10)
Zn1—N22.058 (2)N4—N51.358 (3)
Zn1—N2i2.058 (2)N6—C41.333 (3)
Zn1—O2i2.131 (2)N6—C11.334 (4)
Zn1—O22.131 (2)C4—H120.9300
Zn1—O12.1470 (17)C3—C21.376 (4)
Zn1—O1i2.1470 (17)C3—H130.9300
O1—C61.232 (3)C1—C21.386 (4)
C5—C31.385 (4)C1—H150.9300
C5—C41.389 (3)C2—H160.9300
C5—C61.487 (3)N1—H60.8600
C7—N51.323 (3)N3—N21.353 (3)
C7—N21.332 (3)O2—H2A0.840 (5)
C7—N11.389 (3)O2—H2B0.839 (5)
C6—N11.354 (3)O3—H3A0.837 (5)
N4—N31.298 (3)O3—H3B0.838 (5)
N2—Zn1—N2i180.00 (16)C7—N5—N4103.8 (2)
N2—Zn1—O2i90.26 (8)C4—N6—C1117.9 (2)
N2i—Zn1—O2i89.74 (8)N6—C4—C5123.3 (2)
N2—Zn1—O289.74 (8)N6—C4—H12118.3
N2i—Zn1—O290.26 (8)C5—C4—H12118.3
O2i—Zn1—O2180.0C2—C3—C5119.0 (3)
N2—Zn1—O183.86 (8)C2—C3—H13120.5
N2i—Zn1—O196.14 (8)C5—C3—H13120.5
O2i—Zn1—O187.47 (8)N6—C1—C2122.7 (2)
O2—Zn1—O192.53 (8)N6—C1—H15118.6
N2—Zn1—O1i96.14 (8)C2—C1—H15118.6
N2i—Zn1—O1i83.86 (8)C3—C2—C1119.0 (3)
O2i—Zn1—O1i92.53 (8)C3—C2—H16120.5
O2—Zn1—O1i87.47 (8)C1—C2—H16120.5
O1—Zn1—O1i180.00 (11)C6—N1—C7125.5 (2)
C6—O1—Zn1129.12 (16)C6—N1—H6117.3
C3—C5—C4118.1 (2)C7—N1—H6117.3
C3—C5—C6120.0 (2)N4—N3—N2108.3 (2)
C4—C5—C6122.0 (2)C7—N2—N3105.2 (2)
N5—C7—N2112.0 (2)C7—N2—Zn1126.55 (18)
N5—C7—N1121.8 (2)N3—N2—Zn1128.27 (16)
N2—C7—N1126.1 (2)Zn1—O2—H2A114 (2)
O1—C6—N1123.8 (2)Zn1—O2—H2B117 (2)
O1—C6—C5120.3 (2)H2A—O2—H2B104.1 (12)
N1—C6—C5115.9 (2)H3A—O3—H3B104.7 (13)
N3—N4—N5110.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H6···O30.862.042.829 (3)153
O2—H2A···N5ii0.84 (1)1.97 (1)2.795 (3)165 (3)
O2—H2B···N6iii0.84 (1)1.89 (1)2.727 (3)178 (3)
O3—H3A···O2ii0.84 (1)2.08 (2)2.843 (3)152 (4)
O3—H3B···N4iv0.84 (1)2.09 (1)2.907 (3)164 (4)
Table 1

Selected bond lengths (Å)

Zn1—N22.058 (2)
Zn1—O22.131 (2)
Zn1—O12.1470 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H6⋯O30.862.042.829 (3)153
O2—H2A⋯N5i0.84 (1)1.97 (1)2.795 (3)165 (3)
O2—H2B⋯N6ii0.84 (1)1.89 (1)2.727 (3)178 (3)
O3—H3A⋯O2i0.84 (1)2.08 (2)2.843 (3)152 (4)
O3—H3B⋯N4iii0.84 (1)2.09 (1)2.907 (3)164 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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