Literature DB >> 22590034

N-(2,6-Dimethylphenyl)-N'-propanoyl-thiourea.

Mohd Sukeri Mohd Yusof, Siti Fatimah Abdul Mutalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the title compound, C(12)H(16)N(2)OS, an intra-molecular N-H⋯O hydrogen bond forms an S(6) ring motif. The propionyl-thio-urea group is approximately planar [with a maximum deviation of 0.135 (2) Å] and forms a dihedral angle of 83.39 (7)° with the benzene ring. In the crystal, mol-ecules are linked by pairs of N-H⋯S hydrogen bonds, forming centrosymmetric dimers and generating R(2) (2)(8) ring motifs.

Entities:  

Year:  2012        PMID: 22590034      PMCID: PMC3343953          DOI: 10.1107/S1600536812009233

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Yamin & Othman (2008 ▶); Usman et al. (2002 ▶); Sultana et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H16N2OS M = 236.33 Triclinic, a = 7.8069 (3) Å b = 8.4770 (3) Å c = 10.1426 (3) Å α = 103.782 (2)° β = 90.342 (2)° γ = 109.928 (2)° V = 610.07 (4) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.23 × 0.18 × 0.06 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.946, T max = 0.985 6225 measured reflections 3211 independent reflections 2664 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.100 S = 1.00 3211 reflections 156 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009) ▶; cell refinement: SAINT (Bruker, 2009) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009233/lh5423sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009233/lh5423Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009233/lh5423Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N2OSZ = 2
Mr = 236.33F(000) = 252
Triclinic, P1Dx = 1.287 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.8069 (3) ÅCell parameters from 2626 reflections
b = 8.4770 (3) Åθ = 2.8–30.1°
c = 10.1426 (3) ŵ = 0.25 mm1
α = 103.782 (2)°T = 100 K
β = 90.342 (2)°Plate, colourless
γ = 109.928 (2)°0.23 × 0.18 × 0.06 mm
V = 610.07 (4) Å3
Bruker SMART APEXII CCD area-detector diffractometer3211 independent reflections
Radiation source: fine-focus sealed tube2664 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 29.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→5
Tmin = 0.946, Tmax = 0.985k = −11→11
6225 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0263P)2 + 0.6043P] where P = (Fo2 + 2Fc2)/3
3211 reflections(Δ/σ)max = 0.001
156 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.29160 (6)0.31937 (5)0.83787 (4)0.02011 (12)
N10.48198 (18)0.65151 (17)0.86755 (14)0.0150 (3)
H1N10.537 (3)0.634 (2)0.934 (2)0.018 (5)*
N20.23611 (18)0.53214 (18)0.70040 (14)0.0159 (3)
H1N20.269 (3)0.634 (3)0.690 (2)0.032 (6)*
O10.45702 (17)0.86360 (15)0.77368 (12)0.0218 (3)
C10.7853 (2)1.1145 (2)0.90542 (19)0.0243 (4)
H1A0.89561.18980.96620.036*
H1B0.69271.16970.91610.036*
H1C0.81581.09590.81070.036*
C20.7107 (2)0.9413 (2)0.94142 (17)0.0184 (3)
H2A0.80520.88670.93130.022*
H2B0.68380.96121.03800.022*
C30.5388 (2)0.8192 (2)0.85224 (16)0.0153 (3)
C40.3335 (2)0.5086 (2)0.79737 (16)0.0152 (3)
C50.0741 (2)0.3969 (2)0.62443 (16)0.0153 (3)
C60.0916 (2)0.2808 (2)0.50703 (17)0.0187 (3)
C7−0.0683 (3)0.1516 (2)0.43662 (18)0.0229 (4)
H7A−0.06050.06960.35690.027*
C8−0.2383 (2)0.1413 (2)0.48146 (19)0.0251 (4)
H8A−0.34570.05290.43220.030*
C9−0.2519 (2)0.2590 (2)0.59732 (19)0.0239 (4)
H9A−0.36910.25080.62700.029*
C10−0.0956 (2)0.3906 (2)0.67187 (17)0.0188 (3)
C11−0.1090 (3)0.5156 (2)0.79955 (19)0.0254 (4)
H11A−0.03890.50640.87600.038*
H11B−0.23760.48830.81800.038*
H11C−0.05940.63400.78840.038*
C120.2756 (3)0.2913 (2)0.45815 (19)0.0252 (4)
H12A0.35860.29870.53410.038*
H12B0.32590.39460.42340.038*
H12C0.26220.18740.38520.038*
U11U22U33U12U13U23
S10.0208 (2)0.01442 (19)0.0210 (2)0.00006 (15)−0.00808 (16)0.00615 (15)
N10.0141 (6)0.0134 (6)0.0152 (6)0.0021 (5)−0.0051 (5)0.0037 (5)
N20.0152 (7)0.0128 (6)0.0165 (7)0.0013 (5)−0.0038 (5)0.0033 (5)
O10.0238 (6)0.0167 (6)0.0229 (6)0.0041 (5)−0.0069 (5)0.0061 (5)
C10.0232 (9)0.0169 (8)0.0260 (9)−0.0010 (7)−0.0023 (7)0.0052 (7)
C20.0179 (8)0.0140 (7)0.0199 (8)0.0028 (6)−0.0038 (6)0.0025 (6)
C30.0150 (7)0.0145 (7)0.0141 (7)0.0037 (6)0.0009 (6)0.0019 (5)
C40.0135 (7)0.0154 (7)0.0142 (7)0.0032 (6)0.0002 (6)0.0019 (6)
C50.0152 (7)0.0131 (7)0.0153 (7)0.0019 (6)−0.0044 (6)0.0043 (6)
C60.0197 (8)0.0171 (8)0.0179 (8)0.0044 (6)−0.0033 (6)0.0051 (6)
C70.0283 (9)0.0165 (8)0.0179 (8)0.0020 (7)−0.0081 (7)0.0025 (6)
C80.0212 (9)0.0211 (9)0.0260 (9)−0.0028 (7)−0.0126 (7)0.0091 (7)
C90.0161 (8)0.0267 (9)0.0289 (9)0.0033 (7)−0.0035 (7)0.0134 (7)
C100.0192 (8)0.0195 (8)0.0191 (8)0.0070 (6)−0.0011 (6)0.0072 (6)
C110.0220 (9)0.0285 (9)0.0275 (9)0.0114 (7)0.0038 (7)0.0069 (7)
C120.0263 (9)0.0268 (9)0.0207 (9)0.0096 (7)0.0026 (7)0.0024 (7)
S1—C41.6756 (16)C5—C101.400 (2)
N1—C31.385 (2)C6—C71.397 (2)
N1—C41.393 (2)C6—C121.503 (2)
N1—H1N10.87 (2)C7—C81.386 (3)
N2—C41.331 (2)C7—H7A0.9500
N2—C51.445 (2)C8—C91.380 (3)
N2—H1N20.85 (2)C8—H8A0.9500
O1—C31.219 (2)C9—C101.401 (2)
C1—C21.517 (2)C9—H9A0.9500
C1—H1A0.9800C10—C111.495 (2)
C1—H1B0.9800C11—H11A0.9800
C1—H1C0.9800C11—H11B0.9800
C2—C31.511 (2)C11—H11C0.9800
C2—H2A0.9900C12—H12A0.9800
C2—H2B0.9900C12—H12B0.9800
C5—C61.393 (2)C12—H12C0.9800
C3—N1—C4127.85 (14)C5—C6—C7117.67 (16)
C3—N1—H1N1117.2 (13)C5—C6—C12121.57 (15)
C4—N1—H1N1114.7 (13)C7—C6—C12120.75 (16)
C4—N2—C5122.62 (13)C8—C7—C6120.93 (17)
C4—N2—H1N2116.3 (15)C8—C7—H7A119.5
C5—N2—H1N2120.9 (15)C6—C7—H7A119.5
C2—C1—H1A109.5C9—C8—C7120.23 (16)
C2—C1—H1B109.5C9—C8—H8A119.9
H1A—C1—H1B109.5C7—C8—H8A119.9
C2—C1—H1C109.5C8—C9—C10121.04 (17)
H1A—C1—H1C109.5C8—C9—H9A119.5
H1B—C1—H1C109.5C10—C9—H9A119.5
C3—C2—C1112.25 (14)C5—C10—C9117.38 (16)
C3—C2—H2A109.2C5—C10—C11121.28 (15)
C1—C2—H2A109.2C9—C10—C11121.31 (16)
C3—C2—H2B109.2C10—C11—H11A109.5
C1—C2—H2B109.2C10—C11—H11B109.5
H2A—C2—H2B107.9H11A—C11—H11B109.5
O1—C3—N1122.77 (15)C10—C11—H11C109.5
O1—C3—C2123.23 (14)H11A—C11—H11C109.5
N1—C3—C2114.00 (14)H11B—C11—H11C109.5
N2—C4—N1117.11 (14)C6—C12—H12A109.5
N2—C4—S1124.53 (12)C6—C12—H12B109.5
N1—C4—S1118.36 (12)H12A—C12—H12B109.5
C6—C5—C10122.74 (15)C6—C12—H12C109.5
C6—C5—N2119.40 (14)H12A—C12—H12C109.5
C10—C5—N2117.85 (15)H12B—C12—H12C109.5
C4—N1—C3—O12.3 (3)C10—C5—C6—C12179.71 (15)
C4—N1—C3—C2−177.72 (15)N2—C5—C6—C120.8 (2)
C1—C2—C3—O1−9.3 (2)C5—C6—C7—C80.9 (2)
C1—C2—C3—N1170.72 (14)C12—C6—C7—C8179.91 (16)
C5—N2—C4—N1−177.10 (14)C6—C7—C8—C9−0.2 (3)
C5—N2—C4—S14.1 (2)C7—C8—C9—C10−0.1 (3)
C3—N1—C4—N22.4 (2)C6—C5—C10—C91.0 (2)
C3—N1—C4—S1−178.77 (13)N2—C5—C10—C9179.92 (14)
C4—N2—C5—C6−87.4 (2)C6—C5—C10—C11179.02 (15)
C4—N2—C5—C1093.64 (19)N2—C5—C10—C11−2.0 (2)
C10—C5—C6—C7−1.2 (2)C8—C9—C10—C5−0.3 (2)
N2—C5—C6—C7179.82 (14)C8—C9—C10—C11−178.34 (16)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O10.85 (2)1.98 (2)2.6661 (19)138 (2)
N1—H1N1···S1i0.87 (2)2.54 (2)3.3765 (15)162.0 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O10.85 (2)1.98 (2)2.6661 (19)138 (2)
N1—H1N1⋯S1i0.87 (2)2.54 (2)3.3765 (15)162.0 (16)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-Propionylthio-urea.

Authors:  Bohari M Yamin; Eliyanti A Othman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  4 in total

1.  N-[(2,6-Di-ethyl-phen-yl)carbamo-thio-yl]-2,2-di-phenyl-acetamide.

Authors:  Mohd Sukeri Mohd Yusof; Nur Rafikah Razali; Suhana Arshad; Azhar Abdul Rahman; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-25

2.  4-tert-Butyl-N-[(2,6-dimethyl-phen-yl)carbamothio-yl]benzamide.

Authors:  M Sukeri M Yusof; Suhana Arshad; Ibrahim Abdul Razak; Azhar Abdul Rahman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11

3.  N-[(3-Ethyl-phen-yl)carbamo-thio-yl]-2,2-di-phenyl-acetamide.

Authors:  Mohd Sukeri Mohd Yusof; Nur Rafikah Razali; Suhana Arshad; Azhar Abdul Rahman; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08

4.  2,2-Diphenyl-N-{[2-(tri-fluoro-meth-yl)phen-yl]carbamo-thio-yl}acetamide.

Authors:  Mohd Sukeri Mohd Yusof; Nur Rafikah Razali; Suhana Arshad; Azhar Abdul Rahman; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13
  4 in total

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