| Literature DB >> 24109341 |
Mohd Sukeri Mohd Yusof1, Nur Rafikah Razali, Suhana Arshad, Azhar Abdul Rahman, Ibrahim Abdul Razak.
Abstract
The title mol-ecule, C22H17F3N2OS, adopts a trans-cis conformation with respect to the positions of the carbonyl and tri-fluoro-methyl-benzene groups against the thio-carbonyl group across the C-N bonds. The mol-ecular structure is stabilized by an intra-molecular N-H⋯O hydrogen bond with an S(6) ring motif. The tri-fluoro-methyl-substituted benzene ring forms dihedral angles of 66.05 (9) and 47.19 (9)° with the terminal phenyl rings and is twisted from the O=C-N-(C=S)-N carbonyl-thio-urea plane [maximum deviation = 0.0535 (12) Å], making a dihedral angle of 63.59 (8)°. In the crystal, N-H⋯O and C-H⋯F hydrogen bonds link the mol-ecules into a layer parallel to the bc plane. A C-H⋯π inter-action is also observed.Entities:
Year: 2013 PMID: 24109341 PMCID: PMC3793754 DOI: 10.1107/S1600536813018680
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H17F3N2OS | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 5325 reflections |
| θ = 2.2–27.2° | |
| µ = 0.21 mm−1 | |
| Plate, colourless | |
| 0.56 × 0.18 × 0.06 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 5618 independent reflections |
| Radiation source: fine-focus sealed tube | 4608 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.1°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 21265 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 5618 reflections | Δρmax = 0.24 e Å−3 |
| 270 parameters | Δρmin = −0.25 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 2568 Freidel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.01 (6) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.34230 (6) | 0.45765 (11) | −0.02227 (17) | 0.0418 (4) | |
| F2 | 0.32081 (5) | 0.66244 (10) | −0.02775 (14) | 0.0327 (3) | |
| F3 | 0.29424 (5) | 0.54911 (10) | 0.15416 (15) | 0.0328 (3) | |
| S1 | 0.35402 (2) | 0.73635 (4) | 0.50740 (6) | 0.02441 (11) | |
| N1 | 0.36053 (7) | 0.78665 (14) | 0.2330 (2) | 0.0187 (3) | |
| N2 | 0.28048 (8) | 0.90001 (14) | 0.3579 (2) | 0.0174 (3) | |
| O1 | 0.27383 (6) | 0.95082 (11) | 0.12731 (15) | 0.0193 (3) | |
| C1 | 0.14450 (8) | 1.10138 (16) | 0.0592 (2) | 0.0181 (4) | |
| H1A | 0.1299 | 1.0144 | 0.0731 | 0.022* | |
| C2 | 0.12280 (9) | 1.16913 (18) | −0.0574 (2) | 0.0224 (4) | |
| H2A | 0.0944 | 1.1282 | −0.1238 | 0.027* | |
| C3 | 0.14277 (9) | 1.29838 (18) | −0.0774 (2) | 0.0257 (5) | |
| H3A | 0.1276 | 1.3458 | −0.1568 | 0.031* | |
| C4 | 0.18467 (8) | 1.35616 (16) | 0.0193 (2) | 0.0243 (5) | |
| H4A | 0.1982 | 1.4439 | 0.0065 | 0.029* | |
| C5 | 0.20734 (8) | 1.28682 (16) | 0.1358 (2) | 0.0222 (4) | |
| H5A | 0.2365 | 1.3272 | 0.2012 | 0.027* | |
| C6 | 0.18726 (8) | 1.15807 (15) | 0.1565 (2) | 0.0168 (4) | |
| C7 | 0.20977 (8) | 1.08378 (15) | 0.2869 (2) | 0.0152 (4) | |
| H7A | 0.2368 | 1.1458 | 0.3444 | 0.018* | |
| C8 | 0.14922 (8) | 1.04613 (16) | 0.3756 (2) | 0.0161 (4) | |
| C9 | 0.12615 (9) | 1.13343 (17) | 0.4758 (2) | 0.0217 (4) | |
| H9A | 0.1498 | 1.2121 | 0.4917 | 0.026* | |
| C10 | 0.06891 (9) | 1.10700 (18) | 0.5532 (2) | 0.0253 (4) | |
| H10A | 0.0533 | 1.1678 | 0.6206 | 0.030* | |
| C11 | 0.03473 (9) | 0.99143 (19) | 0.5314 (2) | 0.0273 (5) | |
| H11A | −0.0043 | 0.9727 | 0.5843 | 0.033* | |
| C12 | 0.05759 (9) | 0.90365 (18) | 0.4329 (2) | 0.0240 (5) | |
| H12A | 0.0341 | 0.8246 | 0.4183 | 0.029* | |
| C13 | 0.11465 (9) | 0.92994 (16) | 0.3548 (2) | 0.0201 (4) | |
| H13A | 0.1301 | 0.8689 | 0.2874 | 0.024* | |
| C14 | 0.25639 (8) | 0.97102 (14) | 0.2475 (2) | 0.0148 (3) | |
| C15 | 0.33231 (8) | 0.80792 (16) | 0.3580 (2) | 0.0176 (4) | |
| C16 | 0.41583 (8) | 0.70043 (16) | 0.2104 (2) | 0.0185 (4) | |
| C17 | 0.47773 (9) | 0.72797 (17) | 0.2680 (2) | 0.0216 (4) | |
| H17A | 0.4830 | 0.8010 | 0.3280 | 0.026* | |
| C18 | 0.53209 (9) | 0.64879 (18) | 0.2380 (2) | 0.0260 (5) | |
| H18A | 0.5745 | 0.6681 | 0.2774 | 0.031* | |
| C19 | 0.52477 (9) | 0.54208 (18) | 0.1511 (3) | 0.0295 (5) | |
| H19A | 0.5619 | 0.4874 | 0.1320 | 0.035* | |
| C20 | 0.46349 (9) | 0.51515 (18) | 0.0922 (3) | 0.0269 (5) | |
| H20A | 0.4586 | 0.4424 | 0.0317 | 0.032* | |
| C21 | 0.40852 (9) | 0.59409 (16) | 0.1208 (2) | 0.0213 (4) | |
| C22 | 0.34224 (9) | 0.56611 (17) | 0.0566 (3) | 0.0261 (5) | |
| H1N2 | 0.2679 (10) | 0.9143 (17) | 0.4368 (17) | 0.015 (6)* | |
| H1N1 | 0.3439 (11) | 0.823 (2) | 0.147 (3) | 0.049 (7)* |
| F1 | 0.0392 (7) | 0.0294 (6) | 0.0567 (11) | −0.0032 (5) | −0.0016 (8) | −0.0226 (7) |
| F2 | 0.0323 (6) | 0.0328 (6) | 0.0330 (8) | −0.0032 (5) | −0.0084 (6) | −0.0004 (6) |
| F3 | 0.0265 (5) | 0.0316 (6) | 0.0403 (9) | −0.0078 (4) | 0.0048 (6) | −0.0017 (6) |
| S1 | 0.0327 (2) | 0.02260 (19) | 0.0179 (2) | 0.00898 (17) | 0.0012 (3) | 0.0045 (2) |
| N1 | 0.0213 (7) | 0.0191 (7) | 0.0156 (9) | 0.0036 (6) | −0.0009 (8) | −0.0003 (7) |
| N2 | 0.0215 (7) | 0.0200 (7) | 0.0107 (9) | 0.0040 (6) | 0.0024 (8) | −0.0003 (7) |
| O1 | 0.0197 (6) | 0.0248 (6) | 0.0135 (8) | 0.0022 (5) | −0.0008 (6) | 0.0012 (6) |
| C1 | 0.0161 (7) | 0.0196 (8) | 0.0187 (10) | −0.0002 (6) | 0.0020 (8) | 0.0020 (8) |
| C2 | 0.0202 (8) | 0.0273 (9) | 0.0196 (11) | 0.0014 (7) | −0.0015 (9) | 0.0023 (9) |
| C3 | 0.0211 (9) | 0.0286 (9) | 0.0274 (13) | 0.0056 (7) | 0.0021 (9) | 0.0119 (9) |
| C4 | 0.0224 (8) | 0.0200 (7) | 0.0306 (13) | 0.0011 (6) | 0.0028 (10) | 0.0105 (9) |
| C5 | 0.0185 (8) | 0.0188 (7) | 0.0293 (13) | −0.0021 (6) | 0.0018 (10) | 0.0033 (9) |
| C6 | 0.0150 (7) | 0.0169 (7) | 0.0186 (11) | 0.0018 (6) | 0.0020 (8) | 0.0023 (8) |
| C7 | 0.0163 (7) | 0.0154 (7) | 0.0138 (10) | −0.0015 (6) | −0.0004 (8) | −0.0005 (7) |
| C8 | 0.0165 (7) | 0.0195 (8) | 0.0124 (10) | 0.0018 (6) | −0.0008 (8) | 0.0021 (7) |
| C9 | 0.0228 (8) | 0.0226 (7) | 0.0196 (12) | 0.0038 (6) | −0.0019 (9) | 0.0013 (8) |
| C10 | 0.0252 (9) | 0.0319 (9) | 0.0188 (11) | 0.0098 (7) | 0.0021 (9) | 0.0015 (9) |
| C11 | 0.0180 (8) | 0.0378 (10) | 0.0260 (14) | 0.0047 (7) | 0.0044 (10) | 0.0123 (10) |
| C12 | 0.0190 (8) | 0.0265 (9) | 0.0266 (13) | −0.0021 (7) | −0.0007 (9) | 0.0081 (9) |
| C13 | 0.0188 (8) | 0.0209 (8) | 0.0205 (11) | 0.0003 (6) | −0.0009 (9) | 0.0038 (9) |
| C14 | 0.0132 (7) | 0.0164 (7) | 0.0147 (10) | −0.0030 (6) | −0.0007 (8) | 0.0026 (8) |
| C15 | 0.0199 (8) | 0.0142 (7) | 0.0187 (10) | −0.0012 (6) | 0.0015 (9) | 0.0011 (8) |
| C16 | 0.0195 (8) | 0.0176 (7) | 0.0184 (11) | 0.0030 (6) | 0.0024 (9) | 0.0021 (8) |
| C17 | 0.0239 (9) | 0.0209 (8) | 0.0199 (11) | 0.0006 (7) | −0.0005 (9) | 0.0008 (8) |
| C18 | 0.0201 (8) | 0.0277 (9) | 0.0303 (13) | 0.0017 (7) | 0.0004 (10) | 0.0047 (10) |
| C19 | 0.0255 (9) | 0.0252 (9) | 0.0378 (15) | 0.0072 (7) | 0.0066 (11) | 0.0030 (10) |
| C20 | 0.0301 (9) | 0.0196 (8) | 0.0309 (14) | 0.0026 (7) | 0.0053 (10) | −0.0042 (9) |
| C21 | 0.0231 (8) | 0.0162 (7) | 0.0247 (12) | −0.0007 (6) | 0.0029 (9) | −0.0006 (8) |
| C22 | 0.0275 (9) | 0.0197 (8) | 0.0313 (13) | −0.0021 (7) | 0.0027 (10) | −0.0066 (9) |
| F1—C22 | 1.345 (2) | C7—C14 | 1.536 (2) |
| F2—C22 | 1.346 (2) | C7—H7A | 1.0000 |
| F3—C22 | 1.349 (2) | C8—C9 | 1.391 (3) |
| S1—C15 | 1.661 (2) | C8—C13 | 1.395 (2) |
| N1—C15 | 1.337 (3) | C9—C10 | 1.390 (3) |
| N1—C16 | 1.435 (2) | C9—H9A | 0.9500 |
| N1—H1N1 | 0.96 (3) | C10—C11 | 1.388 (3) |
| N2—C14 | 1.369 (3) | C10—H10A | 0.9500 |
| N2—C15 | 1.405 (2) | C11—C12 | 1.382 (3) |
| N2—H1N2 | 0.807 (15) | C11—H11A | 0.9500 |
| O1—C14 | 1.216 (2) | C12—C13 | 1.391 (3) |
| C1—C2 | 1.382 (3) | C12—H12A | 0.9500 |
| C1—C6 | 1.391 (3) | C13—H13A | 0.9500 |
| C1—H1A | 0.9500 | C16—C17 | 1.386 (2) |
| C2—C3 | 1.402 (3) | C16—C21 | 1.395 (3) |
| C2—H2A | 0.9500 | C17—C18 | 1.390 (2) |
| C3—C4 | 1.382 (3) | C17—H17A | 0.9500 |
| C3—H3A | 0.9500 | C18—C19 | 1.383 (3) |
| C4—C5 | 1.396 (3) | C18—H18A | 0.9500 |
| C4—H4A | 0.9500 | C19—C20 | 1.378 (3) |
| C5—C6 | 1.398 (2) | C19—H19A | 0.9500 |
| C5—H5A | 0.9500 | C20—C21 | 1.395 (2) |
| C6—C7 | 1.527 (3) | C20—H20A | 0.9500 |
| C7—C8 | 1.529 (2) | C21—C22 | 1.490 (3) |
| C15—N1—C16 | 124.13 (18) | C12—C11—C10 | 119.86 (18) |
| C15—N1—H1N1 | 123.6 (14) | C12—C11—H11A | 120.1 |
| C16—N1—H1N1 | 112.2 (15) | C10—C11—H11A | 120.1 |
| C14—N2—C15 | 128.37 (19) | C11—C12—C13 | 120.64 (18) |
| C14—N2—H1N2 | 120.6 (14) | C11—C12—H12A | 119.7 |
| C15—N2—H1N2 | 110.6 (14) | C13—C12—H12A | 119.7 |
| C2—C1—C6 | 121.25 (16) | C12—C13—C8 | 119.89 (19) |
| C2—C1—H1A | 119.4 | C12—C13—H13A | 120.1 |
| C6—C1—H1A | 119.4 | C8—C13—H13A | 120.1 |
| C1—C2—C3 | 119.90 (18) | O1—C14—N2 | 122.15 (15) |
| C1—C2—H2A | 120.1 | O1—C14—C7 | 122.26 (17) |
| C3—C2—H2A | 120.1 | N2—C14—C7 | 115.46 (18) |
| C4—C3—C2 | 119.35 (19) | N1—C15—N2 | 114.95 (19) |
| C4—C3—H3A | 120.3 | N1—C15—S1 | 125.53 (14) |
| C2—C3—H3A | 120.3 | N2—C15—S1 | 119.53 (16) |
| C3—C4—C5 | 120.61 (16) | C17—C16—C21 | 119.80 (16) |
| C3—C4—H4A | 119.7 | C17—C16—N1 | 120.32 (16) |
| C5—C4—H4A | 119.7 | C21—C16—N1 | 119.68 (16) |
| C4—C5—C6 | 120.18 (18) | C16—C17—C18 | 119.99 (18) |
| C4—C5—H5A | 119.9 | C16—C17—H17A | 120.0 |
| C6—C5—H5A | 119.9 | C18—C17—H17A | 120.0 |
| C1—C6—C5 | 118.69 (17) | C19—C18—C17 | 120.36 (18) |
| C1—C6—C7 | 120.99 (14) | C19—C18—H18A | 119.8 |
| C5—C6—C7 | 120.27 (17) | C17—C18—H18A | 119.8 |
| C6—C7—C8 | 110.06 (13) | C20—C19—C18 | 119.87 (17) |
| C6—C7—C14 | 111.04 (16) | C20—C19—H19A | 120.1 |
| C8—C7—C14 | 115.23 (13) | C18—C19—H19A | 120.1 |
| C6—C7—H7A | 106.7 | C19—C20—C21 | 120.42 (18) |
| C8—C7—H7A | 106.7 | C19—C20—H20A | 119.8 |
| C14—C7—H7A | 106.7 | C21—C20—H20A | 119.8 |
| C9—C8—C13 | 119.07 (17) | C20—C21—C16 | 119.55 (17) |
| C9—C8—C7 | 118.72 (15) | C20—C21—C22 | 120.68 (17) |
| C13—C8—C7 | 122.14 (17) | C16—C21—C22 | 119.77 (16) |
| C10—C9—C8 | 120.82 (17) | F1—C22—F2 | 106.09 (19) |
| C10—C9—H9A | 119.6 | F1—C22—F3 | 106.16 (14) |
| C8—C9—H9A | 119.6 | F2—C22—F3 | 106.26 (15) |
| C11—C10—C9 | 119.71 (18) | F1—C22—C21 | 112.90 (15) |
| C11—C10—H10A | 120.1 | F2—C22—C21 | 112.79 (15) |
| C9—C10—H10A | 120.1 | F3—C22—C21 | 112.10 (19) |
| C6—C1—C2—C3 | −1.4 (3) | C8—C7—C14—O1 | 128.74 (18) |
| C1—C2—C3—C4 | 0.7 (3) | C6—C7—C14—N2 | 178.66 (14) |
| C2—C3—C4—C5 | 0.3 (3) | C8—C7—C14—N2 | −55.4 (2) |
| C3—C4—C5—C6 | −0.6 (3) | C16—N1—C15—N2 | 177.55 (15) |
| C2—C1—C6—C5 | 1.1 (3) | C16—N1—C15—S1 | −2.0 (3) |
| C2—C1—C6—C7 | 178.57 (16) | C14—N2—C15—N1 | −1.1 (3) |
| C4—C5—C6—C1 | −0.1 (3) | C14—N2—C15—S1 | 178.46 (14) |
| C4—C5—C6—C7 | −177.58 (16) | C15—N1—C16—C17 | −65.9 (2) |
| C1—C6—C7—C8 | −60.0 (2) | C15—N1—C16—C21 | 119.3 (2) |
| C5—C6—C7—C8 | 117.41 (17) | C21—C16—C17—C18 | −0.8 (3) |
| C1—C6—C7—C14 | 68.76 (19) | N1—C16—C17—C18 | −175.70 (19) |
| C5—C6—C7—C14 | −113.78 (17) | C16—C17—C18—C19 | −0.2 (3) |
| C6—C7—C8—C9 | −88.1 (2) | C17—C18—C19—C20 | 1.0 (3) |
| C14—C7—C8—C9 | 145.37 (17) | C18—C19—C20—C21 | −0.7 (3) |
| C6—C7—C8—C13 | 88.9 (2) | C19—C20—C21—C16 | −0.4 (3) |
| C14—C7—C8—C13 | −37.6 (3) | C19—C20—C21—C22 | 179.5 (2) |
| C13—C8—C9—C10 | −1.0 (3) | C17—C16—C21—C20 | 1.1 (3) |
| C7—C8—C9—C10 | 176.08 (17) | N1—C16—C21—C20 | 176.01 (19) |
| C8—C9—C10—C11 | 0.8 (3) | C17—C16—C21—C22 | −178.75 (18) |
| C9—C10—C11—C12 | −0.3 (3) | N1—C16—C21—C22 | −3.9 (3) |
| C10—C11—C12—C13 | 0.0 (3) | C20—C21—C22—F1 | 2.8 (3) |
| C11—C12—C13—C8 | −0.2 (3) | C16—C21—C22—F1 | −177.32 (18) |
| C9—C8—C13—C12 | 0.7 (3) | C20—C21—C22—F2 | −117.5 (2) |
| C7—C8—C13—C12 | −176.30 (18) | C16—C21—C22—F2 | 62.4 (3) |
| C15—N2—C14—O1 | 8.3 (3) | C20—C21—C22—F3 | 122.6 (2) |
| C15—N2—C14—C7 | −167.60 (16) | C16—C21—C22—F3 | −57.5 (2) |
| C6—C7—C14—O1 | 2.8 (2) |
| H··· | ||||
| N1—H1 | 0.96 (3) | 1.93 (2) | 2.6237 (19) | 127 (2) |
| N2—H1 | 0.81 (2) | 2.04 (2) | 2.838 (2) | 174 (2) |
| C9—H9 | 0.95 | 2.53 | 3.395 (2) | 151 |
| C7—H7 | 1.00 | 2.84 | 3.7826 (19) | 158 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.96 (3) | 1.93 (2) | 2.6237 (19) | 127 (2) |
| N2—H1 | 0.81 (2) | 2.04 (2) | 2.838 (2) | 174 (2) |
| C9—H9 | 0.95 | 2.53 | 3.395 (2) | 151 |
| C7—H7 | 1.00 | 2.84 | 3.7826 (19) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) .