Literature DB >> 24109341

2,2-Diphenyl-N-{[2-(tri-fluoro-meth-yl)phen-yl]carbamo-thio-yl}acetamide.

Mohd Sukeri Mohd Yusof1, Nur Rafikah Razali, Suhana Arshad, Azhar Abdul Rahman, Ibrahim Abdul Razak.   

Abstract

The title mol-ecule, C22H17F3N2OS, adopts a trans-cis conformation with respect to the positions of the carbonyl and tri-fluoro-methyl-benzene groups against the thio-carbonyl group across the C-N bonds. The mol-ecular structure is stabilized by an intra-molecular N-H⋯O hydrogen bond with an S(6) ring motif. The tri-fluoro-methyl-substituted benzene ring forms dihedral angles of 66.05 (9) and 47.19 (9)° with the terminal phenyl rings and is twisted from the O=C-N-(C=S)-N carbonyl-thio-urea plane [maximum deviation = 0.0535 (12) Å], making a dihedral angle of 63.59 (8)°. In the crystal, N-H⋯O and C-H⋯F hydrogen bonds link the mol-ecules into a layer parallel to the bc plane. A C-H⋯π inter-action is also observed.

Entities:  

Year:  2013        PMID: 24109341      PMCID: PMC3793754          DOI: 10.1107/S1600536813018680

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­urea derivatives, see: Vankatachalam et al. (2001 ▶). For related structures, see: Yusof, Arshad et al. (2012 ▶); Yusof, Embong et al. (2012 ▶); Yusof, Mutalib et al. (2012 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H17F3N2OS M = 414.44 Orthorhombic, a = 20.0318 (4) Å b = 10.2866 (2) Å c = 9.5351 (2) Å V = 1964.79 (7) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.56 × 0.18 × 0.06 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.892, T max = 0.987 21265 measured reflections 5618 independent reflections 4608 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.081 S = 1.02 5618 reflections 270 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 2568 Freidel pairs Flack parameter: 0.01 (6) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813018680/is5283sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018680/is5283Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018680/is5283Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H17F3N2OSF(000) = 856
Mr = 414.44Dx = 1.401 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 5325 reflections
a = 20.0318 (4) Åθ = 2.2–27.2°
b = 10.2866 (2) ŵ = 0.21 mm1
c = 9.5351 (2) ÅT = 100 K
V = 1964.79 (7) Å3Plate, colourless
Z = 40.56 × 0.18 × 0.06 mm
Bruker SMART APEXII CCD area-detector diffractometer5618 independent reflections
Radiation source: fine-focus sealed tube4608 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
φ and ω scansθmax = 30.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −27→28
Tmin = 0.892, Tmax = 0.987k = −14→14
21265 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0299P)2 + 0.2655P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
5618 reflectionsΔρmax = 0.24 e Å3
270 parametersΔρmin = −0.25 e Å3
2 restraintsAbsolute structure: Flack (1983), 2568 Freidel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (6)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.34230 (6)0.45765 (11)−0.02227 (17)0.0418 (4)
F20.32081 (5)0.66244 (10)−0.02775 (14)0.0327 (3)
F30.29424 (5)0.54911 (10)0.15416 (15)0.0328 (3)
S10.35402 (2)0.73635 (4)0.50740 (6)0.02441 (11)
N10.36053 (7)0.78665 (14)0.2330 (2)0.0187 (3)
N20.28048 (8)0.90001 (14)0.3579 (2)0.0174 (3)
O10.27383 (6)0.95082 (11)0.12731 (15)0.0193 (3)
C10.14450 (8)1.10138 (16)0.0592 (2)0.0181 (4)
H1A0.12991.01440.07310.022*
C20.12280 (9)1.16913 (18)−0.0574 (2)0.0224 (4)
H2A0.09441.1282−0.12380.027*
C30.14277 (9)1.29838 (18)−0.0774 (2)0.0257 (5)
H3A0.12761.3458−0.15680.031*
C40.18467 (8)1.35616 (16)0.0193 (2)0.0243 (5)
H4A0.19821.44390.00650.029*
C50.20734 (8)1.28682 (16)0.1358 (2)0.0222 (4)
H5A0.23651.32720.20120.027*
C60.18726 (8)1.15807 (15)0.1565 (2)0.0168 (4)
C70.20977 (8)1.08378 (15)0.2869 (2)0.0152 (4)
H7A0.23681.14580.34440.018*
C80.14922 (8)1.04613 (16)0.3756 (2)0.0161 (4)
C90.12615 (9)1.13343 (17)0.4758 (2)0.0217 (4)
H9A0.14981.21210.49170.026*
C100.06891 (9)1.10700 (18)0.5532 (2)0.0253 (4)
H10A0.05331.16780.62060.030*
C110.03473 (9)0.99143 (19)0.5314 (2)0.0273 (5)
H11A−0.00430.97270.58430.033*
C120.05759 (9)0.90365 (18)0.4329 (2)0.0240 (5)
H12A0.03410.82460.41830.029*
C130.11465 (9)0.92994 (16)0.3548 (2)0.0201 (4)
H13A0.13010.86890.28740.024*
C140.25639 (8)0.97102 (14)0.2475 (2)0.0148 (3)
C150.33231 (8)0.80792 (16)0.3580 (2)0.0176 (4)
C160.41583 (8)0.70043 (16)0.2104 (2)0.0185 (4)
C170.47773 (9)0.72797 (17)0.2680 (2)0.0216 (4)
H17A0.48300.80100.32800.026*
C180.53209 (9)0.64879 (18)0.2380 (2)0.0260 (5)
H18A0.57450.66810.27740.031*
C190.52477 (9)0.54208 (18)0.1511 (3)0.0295 (5)
H19A0.56190.48740.13200.035*
C200.46349 (9)0.51515 (18)0.0922 (3)0.0269 (5)
H20A0.45860.44240.03170.032*
C210.40852 (9)0.59409 (16)0.1208 (2)0.0213 (4)
C220.34224 (9)0.56611 (17)0.0566 (3)0.0261 (5)
H1N20.2679 (10)0.9143 (17)0.4368 (17)0.015 (6)*
H1N10.3439 (11)0.823 (2)0.147 (3)0.049 (7)*
U11U22U33U12U13U23
F10.0392 (7)0.0294 (6)0.0567 (11)−0.0032 (5)−0.0016 (8)−0.0226 (7)
F20.0323 (6)0.0328 (6)0.0330 (8)−0.0032 (5)−0.0084 (6)−0.0004 (6)
F30.0265 (5)0.0316 (6)0.0403 (9)−0.0078 (4)0.0048 (6)−0.0017 (6)
S10.0327 (2)0.02260 (19)0.0179 (2)0.00898 (17)0.0012 (3)0.0045 (2)
N10.0213 (7)0.0191 (7)0.0156 (9)0.0036 (6)−0.0009 (8)−0.0003 (7)
N20.0215 (7)0.0200 (7)0.0107 (9)0.0040 (6)0.0024 (8)−0.0003 (7)
O10.0197 (6)0.0248 (6)0.0135 (8)0.0022 (5)−0.0008 (6)0.0012 (6)
C10.0161 (7)0.0196 (8)0.0187 (10)−0.0002 (6)0.0020 (8)0.0020 (8)
C20.0202 (8)0.0273 (9)0.0196 (11)0.0014 (7)−0.0015 (9)0.0023 (9)
C30.0211 (9)0.0286 (9)0.0274 (13)0.0056 (7)0.0021 (9)0.0119 (9)
C40.0224 (8)0.0200 (7)0.0306 (13)0.0011 (6)0.0028 (10)0.0105 (9)
C50.0185 (8)0.0188 (7)0.0293 (13)−0.0021 (6)0.0018 (10)0.0033 (9)
C60.0150 (7)0.0169 (7)0.0186 (11)0.0018 (6)0.0020 (8)0.0023 (8)
C70.0163 (7)0.0154 (7)0.0138 (10)−0.0015 (6)−0.0004 (8)−0.0005 (7)
C80.0165 (7)0.0195 (8)0.0124 (10)0.0018 (6)−0.0008 (8)0.0021 (7)
C90.0228 (8)0.0226 (7)0.0196 (12)0.0038 (6)−0.0019 (9)0.0013 (8)
C100.0252 (9)0.0319 (9)0.0188 (11)0.0098 (7)0.0021 (9)0.0015 (9)
C110.0180 (8)0.0378 (10)0.0260 (14)0.0047 (7)0.0044 (10)0.0123 (10)
C120.0190 (8)0.0265 (9)0.0266 (13)−0.0021 (7)−0.0007 (9)0.0081 (9)
C130.0188 (8)0.0209 (8)0.0205 (11)0.0003 (6)−0.0009 (9)0.0038 (9)
C140.0132 (7)0.0164 (7)0.0147 (10)−0.0030 (6)−0.0007 (8)0.0026 (8)
C150.0199 (8)0.0142 (7)0.0187 (10)−0.0012 (6)0.0015 (9)0.0011 (8)
C160.0195 (8)0.0176 (7)0.0184 (11)0.0030 (6)0.0024 (9)0.0021 (8)
C170.0239 (9)0.0209 (8)0.0199 (11)0.0006 (7)−0.0005 (9)0.0008 (8)
C180.0201 (8)0.0277 (9)0.0303 (13)0.0017 (7)0.0004 (10)0.0047 (10)
C190.0255 (9)0.0252 (9)0.0378 (15)0.0072 (7)0.0066 (11)0.0030 (10)
C200.0301 (9)0.0196 (8)0.0309 (14)0.0026 (7)0.0053 (10)−0.0042 (9)
C210.0231 (8)0.0162 (7)0.0247 (12)−0.0007 (6)0.0029 (9)−0.0006 (8)
C220.0275 (9)0.0197 (8)0.0313 (13)−0.0021 (7)0.0027 (10)−0.0066 (9)
F1—C221.345 (2)C7—C141.536 (2)
F2—C221.346 (2)C7—H7A1.0000
F3—C221.349 (2)C8—C91.391 (3)
S1—C151.661 (2)C8—C131.395 (2)
N1—C151.337 (3)C9—C101.390 (3)
N1—C161.435 (2)C9—H9A0.9500
N1—H1N10.96 (3)C10—C111.388 (3)
N2—C141.369 (3)C10—H10A0.9500
N2—C151.405 (2)C11—C121.382 (3)
N2—H1N20.807 (15)C11—H11A0.9500
O1—C141.216 (2)C12—C131.391 (3)
C1—C21.382 (3)C12—H12A0.9500
C1—C61.391 (3)C13—H13A0.9500
C1—H1A0.9500C16—C171.386 (2)
C2—C31.402 (3)C16—C211.395 (3)
C2—H2A0.9500C17—C181.390 (2)
C3—C41.382 (3)C17—H17A0.9500
C3—H3A0.9500C18—C191.383 (3)
C4—C51.396 (3)C18—H18A0.9500
C4—H4A0.9500C19—C201.378 (3)
C5—C61.398 (2)C19—H19A0.9500
C5—H5A0.9500C20—C211.395 (2)
C6—C71.527 (3)C20—H20A0.9500
C7—C81.529 (2)C21—C221.490 (3)
C15—N1—C16124.13 (18)C12—C11—C10119.86 (18)
C15—N1—H1N1123.6 (14)C12—C11—H11A120.1
C16—N1—H1N1112.2 (15)C10—C11—H11A120.1
C14—N2—C15128.37 (19)C11—C12—C13120.64 (18)
C14—N2—H1N2120.6 (14)C11—C12—H12A119.7
C15—N2—H1N2110.6 (14)C13—C12—H12A119.7
C2—C1—C6121.25 (16)C12—C13—C8119.89 (19)
C2—C1—H1A119.4C12—C13—H13A120.1
C6—C1—H1A119.4C8—C13—H13A120.1
C1—C2—C3119.90 (18)O1—C14—N2122.15 (15)
C1—C2—H2A120.1O1—C14—C7122.26 (17)
C3—C2—H2A120.1N2—C14—C7115.46 (18)
C4—C3—C2119.35 (19)N1—C15—N2114.95 (19)
C4—C3—H3A120.3N1—C15—S1125.53 (14)
C2—C3—H3A120.3N2—C15—S1119.53 (16)
C3—C4—C5120.61 (16)C17—C16—C21119.80 (16)
C3—C4—H4A119.7C17—C16—N1120.32 (16)
C5—C4—H4A119.7C21—C16—N1119.68 (16)
C4—C5—C6120.18 (18)C16—C17—C18119.99 (18)
C4—C5—H5A119.9C16—C17—H17A120.0
C6—C5—H5A119.9C18—C17—H17A120.0
C1—C6—C5118.69 (17)C19—C18—C17120.36 (18)
C1—C6—C7120.99 (14)C19—C18—H18A119.8
C5—C6—C7120.27 (17)C17—C18—H18A119.8
C6—C7—C8110.06 (13)C20—C19—C18119.87 (17)
C6—C7—C14111.04 (16)C20—C19—H19A120.1
C8—C7—C14115.23 (13)C18—C19—H19A120.1
C6—C7—H7A106.7C19—C20—C21120.42 (18)
C8—C7—H7A106.7C19—C20—H20A119.8
C14—C7—H7A106.7C21—C20—H20A119.8
C9—C8—C13119.07 (17)C20—C21—C16119.55 (17)
C9—C8—C7118.72 (15)C20—C21—C22120.68 (17)
C13—C8—C7122.14 (17)C16—C21—C22119.77 (16)
C10—C9—C8120.82 (17)F1—C22—F2106.09 (19)
C10—C9—H9A119.6F1—C22—F3106.16 (14)
C8—C9—H9A119.6F2—C22—F3106.26 (15)
C11—C10—C9119.71 (18)F1—C22—C21112.90 (15)
C11—C10—H10A120.1F2—C22—C21112.79 (15)
C9—C10—H10A120.1F3—C22—C21112.10 (19)
C6—C1—C2—C3−1.4 (3)C8—C7—C14—O1128.74 (18)
C1—C2—C3—C40.7 (3)C6—C7—C14—N2178.66 (14)
C2—C3—C4—C50.3 (3)C8—C7—C14—N2−55.4 (2)
C3—C4—C5—C6−0.6 (3)C16—N1—C15—N2177.55 (15)
C2—C1—C6—C51.1 (3)C16—N1—C15—S1−2.0 (3)
C2—C1—C6—C7178.57 (16)C14—N2—C15—N1−1.1 (3)
C4—C5—C6—C1−0.1 (3)C14—N2—C15—S1178.46 (14)
C4—C5—C6—C7−177.58 (16)C15—N1—C16—C17−65.9 (2)
C1—C6—C7—C8−60.0 (2)C15—N1—C16—C21119.3 (2)
C5—C6—C7—C8117.41 (17)C21—C16—C17—C18−0.8 (3)
C1—C6—C7—C1468.76 (19)N1—C16—C17—C18−175.70 (19)
C5—C6—C7—C14−113.78 (17)C16—C17—C18—C19−0.2 (3)
C6—C7—C8—C9−88.1 (2)C17—C18—C19—C201.0 (3)
C14—C7—C8—C9145.37 (17)C18—C19—C20—C21−0.7 (3)
C6—C7—C8—C1388.9 (2)C19—C20—C21—C16−0.4 (3)
C14—C7—C8—C13−37.6 (3)C19—C20—C21—C22179.5 (2)
C13—C8—C9—C10−1.0 (3)C17—C16—C21—C201.1 (3)
C7—C8—C9—C10176.08 (17)N1—C16—C21—C20176.01 (19)
C8—C9—C10—C110.8 (3)C17—C16—C21—C22−178.75 (18)
C9—C10—C11—C12−0.3 (3)N1—C16—C21—C22−3.9 (3)
C10—C11—C12—C130.0 (3)C20—C21—C22—F12.8 (3)
C11—C12—C13—C8−0.2 (3)C16—C21—C22—F1−177.32 (18)
C9—C8—C13—C120.7 (3)C20—C21—C22—F2−117.5 (2)
C7—C8—C13—C12−176.30 (18)C16—C21—C22—F262.4 (3)
C15—N2—C14—O18.3 (3)C20—C21—C22—F3122.6 (2)
C15—N2—C14—C7−167.60 (16)C16—C21—C22—F3−57.5 (2)
C6—C7—C14—O12.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.96 (3)1.93 (2)2.6237 (19)127 (2)
N2—H1N2···O1i0.81 (2)2.04 (2)2.838 (2)174 (2)
C9—H9A···F1ii0.952.533.395 (2)151
C7—H7A···Cg1iii1.002.843.7826 (19)158
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O10.96 (3)1.93 (2)2.6237 (19)127 (2)
N2—H1N2⋯O1i 0.81 (2)2.04 (2)2.838 (2)174 (2)
C9—H9A⋯F1ii 0.952.533.395 (2)151
C7—H7ACg1iii 1.002.843.7826 (19)158

Symmetry codes: (i) ; (ii) ; (iii) .

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