Literature DB >> 22590027

5-Meth-oxy-1-[(5-meth-oxy-1H-indol-2-yl)meth-yl]-1H-indole.

Mohamed I Attia, Nasser R El-Brollosy, Hazem A Ghabbour, Suhana Arshad, Hoong-Kun Fun.   

Abstract

In the title compound, C(19)H(18)N(2)O(2), the two indole ring systems are essentially planar [maximum deviation = 0.015 (2) Å in both indole ring systems] and make a dihedral angle of 72.17 (7)° with each other. In the crystal, the mol-ecules are linked into a zigzag chain along the a axis via N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590027      PMCID: PMC3343946          DOI: 10.1107/S1600536812009257

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of melatonin (MLT), see: Csernus & Mess (2003 ▶); Nosjean et al. (2000 ▶); Blask et al. (2002 ▶); Genovese et al. (2005 ▶); Mills et al. (2005 ▶); Peres (2005 ▶); Sofic et al. (2005 ▶); Witt-Enderby et al. (2006 ▶). For related structures, see: Narayanan et al. (2011 ▶); Deng et al. (2011 ▶). For the synthesis, see: Attia et al. (2008 ▶).

Experimental

Crystal data

C19H18N2O2 M = 306.35 Monoclinic, a = 9.4446 (5) Å b = 19.5625 (8) Å c = 8.6657 (5) Å β = 98.903 (4)° V = 1581.78 (14) Å3 Z = 4 Cu Kα radiation μ = 0.68 mm−1 T = 296 K 0.92 × 0.20 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.575, T max = 0.961 9421 measured reflections 2584 independent reflections 2087 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.133 S = 1.06 2584 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009257/is5084sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009257/is5084Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009257/is5084Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N2O2F(000) = 648
Mr = 306.35Dx = 1.286 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 919 reflections
a = 9.4446 (5) Åθ = 4.5–60.8°
b = 19.5625 (8) ŵ = 0.68 mm1
c = 8.6657 (5) ÅT = 296 K
β = 98.903 (4)°Plate, pink
V = 1581.78 (14) Å30.92 × 0.20 × 0.06 mm
Z = 4
Bruker APEXII CCD diffractometer2584 independent reflections
Radiation source: fine-focus sealed tube2087 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
φ and ω scansθmax = 65.0°, θmin = 4.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.575, Tmax = 0.961k = −22→22
9421 measured reflectionsl = −8→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.0478P)2 + 0.3465P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2584 reflectionsΔρmax = 0.15 e Å3
215 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0029 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.57956 (17)0.66569 (8)0.6878 (2)0.0604 (4)
N20.32036 (18)0.76234 (9)0.5805 (2)0.0588 (4)
O11.08253 (15)0.66541 (8)0.44352 (19)0.0727 (5)
O20.1802 (2)1.02435 (9)0.3902 (2)0.0978 (6)
C10.4392 (2)0.77296 (11)0.6916 (2)0.0573 (5)
C20.4672 (2)0.84059 (11)0.7021 (2)0.0616 (5)
H2A0.54210.86100.76830.074*
C30.36179 (19)0.87542 (10)0.5938 (2)0.0536 (5)
C40.3345 (2)0.94428 (11)0.5531 (3)0.0644 (6)
H4A0.39240.97890.60180.077*
C50.2203 (2)0.95918 (11)0.4396 (3)0.0675 (6)
C60.1345 (2)0.90736 (12)0.3641 (3)0.0703 (6)
H6A0.05930.91880.28590.084*
C70.1585 (2)0.84013 (12)0.4025 (3)0.0661 (6)
H7A0.10080.80590.35190.079*
C80.27154 (19)0.82467 (9)0.5191 (2)0.0529 (5)
C90.5147 (2)0.71548 (12)0.7821 (3)0.0709 (6)
H9A0.58930.73420.86020.085*
H9B0.44700.69180.83680.085*
C100.5303 (2)0.60163 (11)0.6481 (3)0.0728 (6)
H10A0.44610.58310.67320.087*
C110.6216 (2)0.56865 (11)0.5667 (3)0.0704 (6)
H11A0.61120.52440.52710.084*
C120.73578 (19)0.61433 (9)0.5536 (2)0.0535 (5)
C130.86132 (19)0.60976 (9)0.4852 (2)0.0552 (5)
H13A0.88130.57080.43110.066*
C140.95290 (19)0.66412 (10)0.5005 (2)0.0538 (5)
C150.9232 (2)0.72402 (10)0.5783 (2)0.0565 (5)
H15A0.98740.76030.58520.068*
C160.8003 (2)0.72991 (9)0.6444 (2)0.0548 (5)
H16A0.78020.76960.69610.066*
C170.70772 (19)0.67448 (9)0.6312 (2)0.0505 (4)
C181.1240 (3)0.60545 (15)0.3717 (4)0.0934 (8)
H18A1.21640.61220.34110.140*
H18B1.05500.59530.28110.140*
H18C1.12870.56800.44400.140*
C190.2324 (3)1.07922 (13)0.4857 (4)0.1022 (9)
H19A0.18191.12010.44920.153*
H19C0.33281.08510.48230.153*
H19D0.21841.07010.59110.153*
H1N20.274 (3)0.7238 (12)0.559 (3)0.072 (7)*
U11U22U33U12U13U23
N10.0524 (9)0.0644 (10)0.0664 (11)0.0041 (7)0.0159 (7)0.0093 (8)
N20.0544 (9)0.0598 (10)0.0637 (11)−0.0052 (8)0.0135 (7)0.0005 (8)
O10.0617 (8)0.0756 (10)0.0863 (11)−0.0066 (7)0.0287 (7)−0.0043 (8)
O20.1246 (15)0.0672 (10)0.0933 (14)0.0037 (9)−0.0091 (11)0.0129 (9)
C10.0501 (10)0.0742 (13)0.0501 (12)0.0041 (9)0.0153 (8)−0.0015 (9)
C20.0528 (11)0.0777 (14)0.0531 (12)−0.0001 (9)0.0040 (8)−0.0115 (9)
C30.0514 (10)0.0635 (11)0.0475 (11)−0.0020 (8)0.0132 (8)−0.0084 (8)
C40.0669 (12)0.0638 (13)0.0615 (13)−0.0084 (10)0.0073 (10)−0.0102 (9)
C50.0758 (13)0.0634 (12)0.0624 (14)0.0007 (10)0.0078 (10)0.0034 (10)
C60.0682 (13)0.0769 (14)0.0617 (14)−0.0004 (11)−0.0031 (10)0.0038 (10)
C70.0601 (12)0.0718 (14)0.0634 (13)−0.0117 (10)0.0005 (10)−0.0038 (10)
C80.0495 (10)0.0603 (11)0.0513 (11)−0.0038 (8)0.0147 (8)−0.0033 (8)
C90.0676 (13)0.0903 (16)0.0584 (14)0.0158 (11)0.0217 (10)0.0089 (11)
C100.0542 (11)0.0711 (14)0.0938 (18)−0.0107 (10)0.0132 (11)0.0141 (12)
C110.0587 (12)0.0594 (12)0.0917 (17)−0.0093 (10)0.0079 (11)−0.0037 (11)
C120.0482 (10)0.0538 (10)0.0563 (12)−0.0028 (8)0.0015 (8)0.0027 (8)
C130.0543 (10)0.0534 (10)0.0569 (12)0.0020 (8)0.0061 (8)−0.0050 (8)
C140.0486 (10)0.0600 (11)0.0534 (11)−0.0017 (8)0.0097 (8)0.0042 (8)
C150.0546 (10)0.0527 (11)0.0618 (13)−0.0058 (8)0.0078 (8)0.0018 (8)
C160.0592 (11)0.0502 (10)0.0538 (12)0.0011 (8)0.0053 (8)−0.0016 (8)
C170.0479 (9)0.0530 (10)0.0502 (10)0.0031 (8)0.0064 (7)0.0072 (8)
C180.0780 (16)0.1011 (19)0.110 (2)0.0006 (14)0.0436 (14)−0.0225 (15)
C190.112 (2)0.0623 (15)0.128 (3)0.0008 (14)0.0042 (18)0.0030 (15)
N1—C101.362 (3)C7—H7A0.9300
N1—C171.385 (2)C9—H9A0.9700
N1—C91.465 (3)C9—H9B0.9700
N2—C11.377 (3)C10—C111.359 (3)
N2—C81.381 (3)C10—H10A0.9300
N2—H1N20.88 (2)C11—C121.419 (3)
O1—C141.390 (2)C11—H11A0.9300
O1—C181.411 (3)C12—C171.401 (3)
O2—C51.379 (3)C12—C131.408 (3)
O2—C191.398 (3)C13—C141.364 (3)
C1—C21.349 (3)C13—H13A0.9300
C1—C91.488 (3)C14—C151.402 (3)
C2—C31.431 (3)C15—C161.376 (3)
C2—H2A0.9300C15—H15A0.9300
C3—C81.400 (3)C16—C171.387 (3)
C3—C41.406 (3)C16—H16A0.9300
C4—C51.374 (3)C18—H18A0.9600
C4—H4A0.9300C18—H18B0.9600
C5—C61.396 (3)C18—H18C0.9600
C6—C71.367 (3)C19—H19A0.9600
C6—H6A0.9300C19—H19C0.9600
C7—C81.385 (3)C19—H19D0.9600
C10—N1—C17107.95 (17)H9A—C9—H9B107.6
C10—N1—C9126.61 (18)C11—C10—N1110.38 (18)
C17—N1—C9125.33 (17)C11—C10—H10A124.8
C1—N2—C8108.88 (17)N1—C10—H10A124.8
C1—N2—H1N2127.1 (16)C10—C11—C12107.10 (19)
C8—N2—H1N2123.6 (16)C10—C11—H11A126.5
C14—O1—C18117.49 (17)C12—C11—H11A126.5
C5—O2—C19118.1 (2)C17—C12—C13119.31 (16)
C2—C1—N2108.97 (18)C17—C12—C11106.74 (18)
C2—C1—C9129.2 (2)C13—C12—C11133.94 (19)
N2—C1—C9121.79 (19)C14—C13—C12118.18 (17)
C1—C2—C3108.28 (17)C14—C13—H13A120.9
C1—C2—H2A125.9C12—C13—H13A120.9
C3—C2—H2A125.9C13—C14—O1124.04 (18)
C8—C3—C4119.24 (18)C13—C14—C15121.81 (18)
C8—C3—C2106.12 (17)O1—C14—C15114.14 (16)
C4—C3—C2134.64 (18)C16—C15—C14120.99 (17)
C5—C4—C3118.42 (19)C16—C15—H15A119.5
C5—C4—H4A120.8C14—C15—H15A119.5
C3—C4—H4A120.8C15—C16—C17117.50 (17)
C4—C5—O2124.4 (2)C15—C16—H16A121.2
C4—C5—C6121.1 (2)C17—C16—H16A121.2
O2—C5—C6114.5 (2)N1—C17—C16129.98 (18)
C7—C6—C5121.5 (2)N1—C17—C12107.83 (16)
C7—C6—H6A119.3C16—C17—C12122.19 (18)
C5—C6—H6A119.3O1—C18—H18A109.5
C6—C7—C8117.88 (19)O1—C18—H18B109.5
C6—C7—H7A121.1H18A—C18—H18B109.5
C8—C7—H7A121.1O1—C18—H18C109.5
N2—C8—C7130.36 (18)H18A—C18—H18C109.5
N2—C8—C3107.76 (17)H18B—C18—H18C109.5
C7—C8—C3121.86 (19)O2—C19—H19A109.5
N1—C9—C1114.58 (18)O2—C19—H19C109.5
N1—C9—H9A108.6H19A—C19—H19C109.5
C1—C9—H9A108.6O2—C19—H19D109.5
N1—C9—H9B108.6H19A—C19—H19D109.5
C1—C9—H9B108.6H19C—C19—H19D109.5
C8—N2—C1—C2−0.1 (2)N2—C1—C9—N163.6 (3)
C8—N2—C1—C9178.52 (17)C17—N1—C10—C11−0.4 (2)
N2—C1—C2—C30.3 (2)C9—N1—C10—C11−176.8 (2)
C9—C1—C2—C3−178.2 (2)N1—C10—C11—C120.0 (3)
C1—C2—C3—C8−0.3 (2)C10—C11—C12—C170.5 (2)
C1—C2—C3—C4179.3 (2)C10—C11—C12—C13179.3 (2)
C8—C3—C4—C5−0.7 (3)C17—C12—C13—C141.4 (3)
C2—C3—C4—C5179.7 (2)C11—C12—C13—C14−177.2 (2)
C3—C4—C5—O2179.0 (2)C12—C13—C14—O1177.71 (17)
C3—C4—C5—C6−1.1 (3)C12—C13—C14—C15−1.6 (3)
C19—O2—C5—C4−17.5 (4)C18—O1—C14—C13−2.9 (3)
C19—O2—C5—C6162.6 (2)C18—O1—C14—C15176.4 (2)
C4—C5—C6—C71.6 (4)C13—C14—C15—C160.9 (3)
O2—C5—C6—C7−178.5 (2)O1—C14—C15—C16−178.47 (17)
C5—C6—C7—C8−0.2 (3)C14—C15—C16—C170.0 (3)
C1—N2—C8—C7178.2 (2)C10—N1—C17—C16−178.4 (2)
C1—N2—C8—C3−0.1 (2)C9—N1—C17—C16−1.9 (3)
C6—C7—C8—N2−179.7 (2)C10—N1—C17—C120.7 (2)
C6—C7—C8—C3−1.6 (3)C9—N1—C17—C12177.15 (18)
C4—C3—C8—N2−179.48 (17)C15—C16—C17—N1178.80 (18)
C2—C3—C8—N20.3 (2)C15—C16—C17—C12−0.2 (3)
C4—C3—C8—C72.1 (3)C13—C12—C17—N1−179.73 (16)
C2—C3—C8—C7−178.18 (18)C11—C12—C17—N1−0.7 (2)
C10—N1—C9—C1−105.6 (2)C13—C12—C17—C16−0.5 (3)
C17—N1—C9—C178.6 (3)C11—C12—C17—C16178.44 (17)
C2—C1—C9—N1−118.1 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.88 (2)2.24 (3)3.037 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.88 (2)2.24 (3)3.037 (2)151 (2)

Symmetry code: (i) .

  13 in total

Review 1.  Biorhythms and pineal gland.

Authors:  Valér Csernus; Béla Mess
Journal:  Neuro Endocrinol Lett       Date:  2003-12       Impact factor: 0.765

Review 2.  Melatonin in the treatment of cancer: a systematic review of randomized controlled trials and meta-analysis.

Authors:  Edward Mills; Ping Wu; Dugald Seely; Gordon Guyatt
Journal:  J Pineal Res       Date:  2005-11       Impact factor: 13.007

Review 3.  Therapeutic treatments potentially mediated by melatonin receptors: potential clinical uses in the prevention of osteoporosis, cancer and as an adjuvant therapy.

Authors:  Paula A Witt-Enderby; Nicholas M Radio; John S Doctor; Vicki L Davis
Journal:  J Pineal Res       Date:  2006-11       Impact factor: 13.007

4.  Attenuation in the evolution of experimental spinal cord trauma by treatment with melatonin.

Authors:  Tiziana Genovese; Emanuela Mazzon; Carmelo Muià; Placido Bramanti; Angelina De Sarro; Salvatore Cuzzocrea
Journal:  J Pineal Res       Date:  2005-04       Impact factor: 13.007

5.  Antioxidant capacity of the neurohormone melatonin.

Authors:  E Sofic; Z Rimpapa; Z Kundurovic; A Sapcanin; I Tahirovic; A Rustembegovic; G Cao
Journal:  J Neural Transm (Vienna)       Date:  2005-01-24       Impact factor: 3.575

Review 6.  Melatonin, the pineal gland and their implications for headache disorders.

Authors:  M F P Peres
Journal:  Cephalalgia       Date:  2005-06       Impact factor: 6.292

Review 7.  Melatonin as a chronobiotic/anticancer agent: cellular, biochemical, and molecular mechanisms of action and their implications for circadian-based cancer therapy.

Authors:  David E Blask; Leonard A Sauer; Robert T Dauchy
Journal:  Curr Top Med Chem       Date:  2002-02       Impact factor: 3.295

8.  4-[Bis(1H-indol-3-yl)meth-yl]benzonitrile.

Authors:  Xiang Deng; Di Wu; Xiaomei Huang; Feihua Luo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

9.  5-Meth-oxy-3-[(5-meth-oxy-1H-indol-3-yl)(phen-yl)meth-yl]-1H-indole.

Authors:  P Narayanan; K Sethusankar; K Ramachandiran; P T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more
  1 in total

1.  5-Meth-oxy-2-[(5-meth-oxy-1H-indol-1-yl)carbon-yl]-1H-indole.

Authors:  Mohamed I Attia; Nasser R El-Brollosy; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  1 in total

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