Literature DB >> 21837011

4-[Bis(1H-indol-3-yl)meth-yl]benzonitrile.

Xiang Deng1, Di Wu, Xiaomei Huang, Feihua Luo.   

Abstract

In the title mol-ecule, C(24)H(17)N(3), the didhedral angles formed by the mean planes of the indole ring systems and the benzene ring are 86.44 (7) and 86.96 (7)°. The dihedral angle between the two indole ring systems is 72.08 (6)°. In the crystal, inter-molecular bifurcated (N-H)(2)⋯N hydrogen bonds link mol-ecules into sheets lying parallel to (010).

Entities:  

Year:  2011        PMID: 21837011      PMCID: PMC3151881          DOI: 10.1107/S1600536811020411

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and the biological activity of bis­indolylalkanes and their derivatives, see: Bell et al. (1994 ▶). For related structures, see: Govindasamy et al. (1998 ▶); Krishna, Velmurugan, Babu & Perumal (1999 ▶); Krishna, Velmurugan & Shanmuga Sundara (1999 ▶); Seetharaman & Rajan (1995 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C24H17N3 M = 347.41 Monoclinic, a = 9.5882 (12) Å b = 19.155 (3) Å c = 10.3801 (13) Å β = 100.562 (3)° V = 1874.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.20 × 0.15 × 0.09 mm

Data collection

Bruker SMART CCD diffractometer 14081 measured reflections 3292 independent reflections 2613 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.05 3292 reflections 253 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811020411/lh5252sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811020411/lh5252Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811020411/lh5252Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H17N3F(000) = 728
Mr = 347.41Dx = 1.231 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3543 reflections
a = 9.5882 (12) Åθ = 2.9–24.6°
b = 19.155 (3) ŵ = 0.07 mm1
c = 10.3801 (13) ÅT = 296 K
β = 100.562 (3)°Block, colourless
V = 1874.1 (4) Å30.20 × 0.15 × 0.09 mm
Z = 4
Bruker SMART CCD diffractometer2613 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 25.0°, θmin = 2.1°
φ and ω scansh = −11→11
14081 measured reflectionsk = −22→22
3292 independent reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0494P)2 + 0.3483P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3292 reflectionsΔρmax = 0.15 e Å3
253 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.58636 (15)0.10803 (8)0.05439 (14)0.0403 (4)
H10.56370.05810.05420.048*
C20.62867 (15)0.12277 (7)−0.07541 (15)0.0403 (4)
C30.54762 (15)0.10350 (8)−0.20061 (15)0.0421 (4)
C40.41722 (17)0.06995 (9)−0.23996 (16)0.0520 (4)
H40.36330.0566−0.17820.062*
C50.3700 (2)0.05705 (10)−0.37001 (18)0.0652 (5)
H50.28390.0342−0.39630.078*
C60.4482 (2)0.07750 (11)−0.46368 (19)0.0690 (5)
H60.41320.0685−0.55170.083*
C70.5762 (2)0.11079 (10)−0.42865 (17)0.0627 (5)
H70.62860.1242−0.49150.075*
C80.62532 (16)0.12383 (8)−0.29631 (16)0.0467 (4)
C90.74842 (16)0.15361 (8)−0.10002 (17)0.0477 (4)
H90.82080.1714−0.03650.057*
C100.70384 (15)0.11951 (8)0.16965 (15)0.0419 (4)
C110.82977 (15)0.07764 (8)0.20221 (15)0.0425 (4)
C120.88333 (17)0.02088 (9)0.14286 (17)0.0526 (4)
H120.83660.00420.06230.063*
C131.00687 (19)−0.01001 (10)0.2058 (2)0.0657 (5)
H131.0432−0.04810.16740.079*
C141.0784 (2)0.01494 (11)0.3263 (2)0.0686 (5)
H141.1610−0.00730.36710.082*
C151.02992 (19)0.07111 (11)0.38510 (18)0.0624 (5)
H151.07830.08780.46500.075*
C160.90608 (16)0.10251 (9)0.32187 (15)0.0496 (4)
C170.71121 (17)0.16730 (9)0.26731 (16)0.0517 (4)
H170.64340.20150.27150.062*
C180.45208 (15)0.14628 (8)0.07105 (15)0.0422 (4)
C190.42852 (19)0.21445 (10)0.0326 (2)0.0742 (6)
H190.49490.2373−0.00720.089*
C200.3091 (2)0.24975 (10)0.0516 (2)0.0786 (7)
H200.29610.29620.02620.094*
C210.20928 (16)0.21613 (9)0.10831 (17)0.0528 (4)
C220.23052 (18)0.14779 (10)0.14648 (19)0.0647 (5)
H220.16310.12460.18460.078*
C230.35136 (17)0.11352 (9)0.12836 (17)0.0569 (5)
H230.36530.06730.15540.068*
C240.08275 (18)0.25223 (10)0.12602 (18)0.0602 (5)
N1−0.01856 (16)0.28075 (10)0.13748 (17)0.0757 (5)
N20.83216 (15)0.15817 (8)0.35857 (15)0.0585 (4)
H2A0.856 (2)0.1831 (12)0.434 (2)0.088 (7)*
N30.74724 (15)0.15470 (7)−0.23225 (15)0.0539 (4)
H3A0.814 (2)0.1722 (10)−0.2680 (19)0.069 (6)*
U11U22U33U12U13U23
C10.0363 (8)0.0372 (8)0.0485 (9)0.0003 (6)0.0109 (7)0.0017 (7)
C20.0330 (7)0.0403 (8)0.0488 (9)0.0030 (6)0.0102 (7)0.0026 (7)
C30.0387 (8)0.0405 (8)0.0478 (9)0.0061 (7)0.0101 (7)0.0065 (7)
C40.0448 (9)0.0555 (10)0.0540 (10)−0.0033 (8)0.0051 (8)0.0092 (8)
C50.0619 (11)0.0678 (12)0.0594 (12)−0.0042 (9)−0.0057 (9)0.0031 (9)
C60.0797 (14)0.0726 (13)0.0498 (11)0.0064 (11)−0.0007 (10)0.0013 (9)
C70.0752 (13)0.0673 (12)0.0496 (11)0.0144 (10)0.0219 (9)0.0124 (9)
C80.0446 (9)0.0450 (9)0.0530 (10)0.0077 (7)0.0152 (7)0.0085 (7)
C90.0383 (8)0.0484 (9)0.0574 (10)−0.0027 (7)0.0118 (7)0.0019 (7)
C100.0369 (8)0.0449 (9)0.0455 (9)−0.0026 (6)0.0119 (7)0.0005 (7)
C110.0366 (8)0.0479 (9)0.0443 (9)−0.0022 (7)0.0110 (7)0.0054 (7)
C120.0470 (9)0.0536 (10)0.0576 (10)0.0024 (8)0.0109 (8)0.0013 (8)
C130.0561 (11)0.0599 (11)0.0824 (14)0.0144 (9)0.0163 (10)0.0089 (10)
C140.0497 (10)0.0788 (14)0.0744 (13)0.0089 (10)0.0035 (10)0.0259 (11)
C150.0503 (10)0.0829 (14)0.0511 (10)−0.0064 (10)0.0017 (8)0.0153 (10)
C160.0430 (9)0.0604 (10)0.0465 (9)−0.0070 (8)0.0110 (7)0.0066 (8)
C170.0434 (9)0.0565 (10)0.0567 (10)−0.0002 (8)0.0131 (8)−0.0054 (8)
C180.0351 (8)0.0442 (9)0.0483 (9)−0.0013 (6)0.0108 (7)0.0011 (7)
C190.0574 (11)0.0509 (11)0.1275 (18)0.0076 (9)0.0519 (12)0.0222 (11)
C200.0654 (12)0.0509 (11)0.1321 (19)0.0138 (9)0.0516 (13)0.0227 (11)
C210.0400 (9)0.0618 (11)0.0593 (10)0.0086 (8)0.0163 (8)0.0024 (8)
C220.0508 (10)0.0704 (12)0.0821 (13)0.0072 (9)0.0362 (9)0.0218 (10)
C230.0503 (10)0.0539 (10)0.0723 (12)0.0079 (8)0.0264 (9)0.0198 (9)
C240.0460 (10)0.0738 (12)0.0634 (12)0.0099 (9)0.0171 (8)0.0044 (9)
N10.0533 (9)0.0929 (13)0.0860 (12)0.0226 (9)0.0265 (8)0.0099 (9)
N20.0539 (9)0.0728 (10)0.0486 (9)−0.0063 (8)0.0088 (7)−0.0127 (8)
N30.0445 (8)0.0587 (9)0.0643 (10)−0.0013 (7)0.0253 (7)0.0109 (7)
C1—C101.502 (2)C12—H120.9300
C1—C21.503 (2)C13—C141.396 (3)
C1—C181.519 (2)C13—H130.9300
C1—H10.9800C14—C151.361 (3)
C2—C91.356 (2)C14—H140.9300
C2—C31.435 (2)C15—C161.384 (2)
C3—C41.399 (2)C15—H150.9300
C3—C81.402 (2)C16—N21.372 (2)
C4—C51.366 (2)C17—N21.368 (2)
C4—H40.9300C17—H170.9300
C5—C61.389 (3)C18—C191.372 (2)
C5—H50.9300C18—C231.375 (2)
C6—C71.371 (3)C19—C201.375 (2)
C6—H60.9300C19—H190.9300
C7—C81.391 (2)C20—C211.373 (2)
C7—H70.9300C20—H200.9300
C8—N31.369 (2)C21—C221.372 (2)
C9—N31.371 (2)C21—C241.437 (2)
C9—H90.9300C22—C231.374 (2)
C10—C171.358 (2)C22—H220.9300
C10—C111.437 (2)C23—H230.9300
C11—C121.393 (2)C24—N11.140 (2)
C11—C161.404 (2)N2—H2A0.91 (2)
C12—C131.377 (2)N3—H3A0.86 (2)
C10—C1—C2113.60 (12)C12—C13—H13119.4
C10—C1—C18111.50 (12)C14—C13—H13119.4
C2—C1—C18112.65 (12)C15—C14—C13121.38 (17)
C10—C1—H1106.1C15—C14—H14119.3
C2—C1—H1106.1C13—C14—H14119.3
C18—C1—H1106.1C14—C15—C16117.70 (17)
C9—C2—C3106.14 (13)C14—C15—H15121.2
C9—C2—C1128.86 (14)C16—C15—H15121.2
C3—C2—C1124.97 (13)N2—C16—C15130.37 (17)
C4—C3—C8118.91 (15)N2—C16—C11107.29 (14)
C4—C3—C2133.59 (14)C15—C16—C11122.30 (17)
C8—C3—C2107.49 (13)C10—C17—N2110.63 (15)
C5—C4—C3119.26 (16)C10—C17—H17124.7
C5—C4—H4120.4N2—C17—H17124.7
C3—C4—H4120.4C19—C18—C23117.96 (14)
C4—C5—C6121.14 (18)C19—C18—C1121.60 (13)
C4—C5—H5119.4C23—C18—C1120.43 (14)
C6—C5—H5119.4C18—C19—C20121.58 (16)
C7—C6—C5121.16 (18)C18—C19—H19119.2
C7—C6—H6119.4C20—C19—H19119.2
C5—C6—H6119.4C21—C20—C19119.69 (17)
C6—C7—C8118.03 (17)C21—C20—H20120.2
C6—C7—H7121.0C19—C20—H20120.2
C8—C7—H7121.0C22—C21—C20119.55 (15)
N3—C8—C7131.44 (16)C22—C21—C24120.41 (16)
N3—C8—C3107.05 (14)C20—C21—C24120.04 (16)
C7—C8—C3121.50 (16)C21—C22—C23120.03 (15)
C2—C9—N3110.08 (15)C21—C22—H22120.0
C2—C9—H9125.0C23—C22—H22120.0
N3—C9—H9125.0C22—C23—C18121.19 (16)
C17—C10—C11105.91 (14)C22—C23—H23119.4
C17—C10—C1128.49 (14)C18—C23—H23119.4
C11—C10—C1125.50 (13)N1—C24—C21178.7 (2)
C12—C11—C16118.77 (14)C17—N2—C16108.82 (14)
C12—C11—C10133.90 (15)C17—N2—H2A125.3 (14)
C16—C11—C10107.31 (14)C16—N2—H2A125.7 (14)
C13—C12—C11118.70 (17)C8—N3—C9109.24 (13)
C13—C12—H12120.7C8—N3—H3A126.3 (13)
C11—C12—H12120.7C9—N3—H3A124.4 (13)
C12—C13—C14121.11 (18)
C10—C1—C2—C9−10.3 (2)C11—C12—C13—C14−0.5 (3)
C18—C1—C2—C9117.73 (17)C12—C13—C14—C15−0.8 (3)
C10—C1—C2—C3167.30 (13)C13—C14—C15—C160.5 (3)
C18—C1—C2—C3−64.69 (18)C14—C15—C16—N2178.63 (17)
C9—C2—C3—C4179.30 (17)C14—C15—C16—C111.1 (2)
C1—C2—C3—C41.3 (3)C12—C11—C16—N2179.62 (14)
C9—C2—C3—C80.43 (16)C10—C11—C16—N2−1.61 (17)
C1—C2—C3—C8−177.61 (13)C12—C11—C16—C15−2.3 (2)
C8—C3—C4—C50.9 (2)C10—C11—C16—C15176.45 (14)
C2—C3—C4—C5−177.91 (16)C11—C10—C17—N2−0.21 (18)
C3—C4—C5—C6−0.9 (3)C1—C10—C17—N2176.26 (14)
C4—C5—C6—C70.6 (3)C10—C1—C18—C1987.1 (2)
C5—C6—C7—C8−0.3 (3)C2—C1—C18—C19−42.0 (2)
C6—C7—C8—N3179.15 (17)C10—C1—C18—C23−91.44 (18)
C6—C7—C8—C30.3 (3)C2—C1—C18—C23139.46 (16)
C4—C3—C8—N3−179.68 (14)C23—C18—C19—C200.7 (3)
C2—C3—C8—N3−0.62 (17)C1—C18—C19—C20−177.84 (19)
C4—C3—C8—C7−0.6 (2)C18—C19—C20—C21−1.1 (4)
C2—C3—C8—C7178.47 (14)C19—C20—C21—C220.6 (3)
C3—C2—C9—N3−0.08 (17)C19—C20—C21—C24−178.70 (19)
C1—C2—C9—N3177.86 (14)C20—C21—C22—C230.2 (3)
C2—C1—C10—C17115.39 (17)C24—C21—C22—C23179.56 (18)
C18—C1—C10—C17−13.2 (2)C21—C22—C23—C18−0.6 (3)
C2—C1—C10—C11−68.78 (18)C19—C18—C23—C220.2 (3)
C18—C1—C10—C11162.63 (13)C1—C18—C23—C22178.74 (16)
C17—C10—C11—C12179.63 (17)C10—C17—N2—C16−0.81 (19)
C1—C10—C11—C123.0 (3)C15—C16—N2—C17−176.35 (17)
C17—C10—C11—C161.12 (17)C11—C16—N2—C171.50 (18)
C1—C10—C11—C16−175.49 (14)C7—C8—N3—C9−178.39 (17)
C16—C11—C12—C132.0 (2)C3—C8—N3—C90.58 (17)
C10—C11—C12—C13−176.41 (16)C2—C9—N3—C8−0.32 (18)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N1i0.86 (2)2.22 (2)3.084 (2)178.6 (18)
N2—H2A···N1ii0.91 (2)2.34 (2)3.206 (2)160.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N1i0.86 (2)2.22 (2)3.084 (2)178.6 (18)
N2—H2A⋯N1ii0.91 (2)2.34 (2)3.206 (2)160.3 (19)

Symmetry codes: (i) ; (ii) .

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