| Literature DB >> 22590021 |
Amna Qasem Ali, Naser Eltaher Eltayeb, Siang Guan Teoh, Abdussalam Salhin, Hoong-Kun Fun.
Abstract
In the title compound, C(15)H(12)N(4)OS, the dihedral angle between the nine-membered indolin-2-one ring system and the phenyl ring is 2.72 (7)°. Intra-molecular cyclic N-H⋯O and C-H⋯S hydrogen-bonding inter-actions [graph set S(6)] are present, as are weak N-H⋯N inter-actions [graph set S(5)]. In the crystal, mol-ecules form centrosymmetric cyclic dimers through pairs of N-H⋯O hydrogen bonds [graph set R(2) (2)(8)] and these are extended by C-H⋯S inter-actions. The crystal structure also features weak C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 22590021 PMCID: PMC3343940 DOI: 10.1107/S160053681200400X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12N4OS | |
| Monoclinic, | Melting point = 510.2–511.6 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 4743 reflections | |
| θ = 3.0–30.1° | |
| µ = 0.24 mm−1 | |
| β = 93.383 (1)° | |
| Needle, yellow | |
| 0.47 × 0.13 × 0.13 mm |
| Bruker APEXII CCD diffractometer | 4159 independent reflections |
| Radiation source: fine-focus sealed tube | 2985 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 15557 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4159 reflections | (Δ/σ)max = 0.001 |
| 202 parameters | Δρmax = 0.34 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.15701 (8) | 0.72368 (4) | 1.06040 (3) | 0.03145 (15) | |
| O1 | 0.73491 (19) | 0.55698 (8) | 1.00760 (8) | 0.0228 (3) | |
| N1 | 0.9075 (2) | 0.50533 (10) | 0.87950 (10) | 0.0208 (3) | |
| N2 | 0.4169 (2) | 0.61290 (9) | 0.85318 (10) | 0.0177 (3) | |
| N3 | 0.3689 (2) | 0.63773 (9) | 0.94027 (10) | 0.0191 (3) | |
| N4 | 0.0843 (2) | 0.70518 (9) | 0.87089 (10) | 0.0181 (3) | |
| C1 | 0.8690 (3) | 0.50379 (11) | 0.78102 (12) | 0.0195 (4) | |
| C2 | 0.9950 (3) | 0.47108 (12) | 0.71370 (13) | 0.0241 (4) | |
| H2A | 1.1264 | 0.4445 | 0.7306 | 0.029* | |
| C3 | 0.9210 (3) | 0.47880 (12) | 0.61995 (13) | 0.0253 (4) | |
| H3A | 1.0027 | 0.4560 | 0.5719 | 0.030* | |
| C4 | 0.7296 (3) | 0.51916 (12) | 0.59478 (13) | 0.0231 (4) | |
| H4A | 0.6846 | 0.5243 | 0.5301 | 0.028* | |
| C5 | 0.6042 (3) | 0.55185 (11) | 0.66319 (12) | 0.0206 (4) | |
| H5A | 0.4741 | 0.5794 | 0.6462 | 0.025* | |
| C6 | 0.6740 (3) | 0.54324 (11) | 0.75712 (12) | 0.0184 (4) | |
| C7 | 0.5904 (3) | 0.57114 (11) | 0.84497 (12) | 0.0176 (3) | |
| C8 | 0.7491 (3) | 0.54476 (11) | 0.92218 (12) | 0.0188 (4) | |
| C9 | 0.1964 (3) | 0.68962 (11) | 0.95214 (12) | 0.0185 (4) | |
| C10 | −0.1096 (3) | 0.74787 (11) | 0.85012 (12) | 0.0168 (3) | |
| C11 | −0.1753 (3) | 0.74938 (11) | 0.75467 (12) | 0.0190 (4) | |
| H11A | −0.0892 | 0.7245 | 0.7095 | 0.023* | |
| C12 | −0.3656 (3) | 0.78705 (11) | 0.72568 (13) | 0.0237 (4) | |
| H12A | −0.4098 | 0.7878 | 0.6607 | 0.028* | |
| C13 | −0.4917 (3) | 0.82369 (11) | 0.79112 (13) | 0.0247 (4) | |
| H13A | −0.6228 | 0.8492 | 0.7714 | 0.030* | |
| C14 | −0.4248 (3) | 0.82279 (11) | 0.88559 (13) | 0.0229 (4) | |
| H14A | −0.5106 | 0.8486 | 0.9303 | 0.027* | |
| C15 | −0.2349 (3) | 0.78504 (11) | 0.91642 (12) | 0.0196 (4) | |
| H15A | −0.1912 | 0.7846 | 0.9815 | 0.024* | |
| H1N1 | 1.018 (3) | 0.4836 (14) | 0.9106 (15) | 0.037 (6)* | |
| H1N3 | 0.457 (4) | 0.6258 (14) | 0.9879 (16) | 0.039 (6)* | |
| H1N4 | 0.144 (3) | 0.6806 (14) | 0.8234 (15) | 0.029 (6)* |
| S1 | 0.0267 (2) | 0.0507 (3) | 0.0168 (2) | 0.0076 (2) | 0.00014 (18) | −0.0045 (2) |
| O1 | 0.0242 (6) | 0.0248 (7) | 0.0189 (6) | 0.0016 (5) | −0.0032 (5) | 0.0026 (5) |
| N1 | 0.0191 (7) | 0.0199 (8) | 0.0228 (8) | 0.0043 (6) | −0.0032 (6) | 0.0020 (6) |
| N2 | 0.0189 (7) | 0.0153 (7) | 0.0187 (7) | −0.0008 (6) | 0.0001 (5) | 0.0008 (6) |
| N3 | 0.0184 (7) | 0.0216 (8) | 0.0171 (7) | 0.0022 (6) | −0.0011 (6) | 0.0020 (6) |
| N4 | 0.0184 (7) | 0.0193 (8) | 0.0166 (7) | 0.0032 (6) | 0.0014 (6) | 0.0000 (6) |
| C1 | 0.0195 (8) | 0.0131 (8) | 0.0254 (9) | 0.0000 (7) | −0.0025 (7) | 0.0014 (7) |
| C2 | 0.0211 (9) | 0.0197 (9) | 0.0315 (10) | 0.0045 (7) | 0.0006 (8) | 0.0030 (8) |
| C3 | 0.0265 (9) | 0.0231 (9) | 0.0268 (9) | 0.0049 (8) | 0.0064 (8) | 0.0016 (8) |
| C4 | 0.0248 (9) | 0.0220 (9) | 0.0225 (9) | 0.0017 (7) | 0.0004 (7) | 0.0018 (7) |
| C5 | 0.0187 (8) | 0.0181 (9) | 0.0248 (9) | 0.0010 (7) | −0.0016 (7) | 0.0016 (7) |
| C6 | 0.0190 (8) | 0.0140 (8) | 0.0220 (8) | 0.0005 (7) | −0.0007 (7) | 0.0009 (7) |
| C7 | 0.0183 (8) | 0.0127 (8) | 0.0213 (8) | −0.0015 (6) | −0.0020 (7) | 0.0023 (6) |
| C8 | 0.0187 (8) | 0.0120 (8) | 0.0254 (9) | −0.0013 (7) | −0.0021 (7) | 0.0031 (7) |
| C9 | 0.0173 (8) | 0.0186 (8) | 0.0195 (8) | −0.0036 (7) | 0.0016 (6) | 0.0035 (7) |
| C10 | 0.0164 (8) | 0.0136 (8) | 0.0205 (8) | −0.0016 (6) | 0.0017 (6) | 0.0014 (6) |
| C11 | 0.0198 (8) | 0.0179 (8) | 0.0194 (8) | 0.0002 (7) | 0.0023 (7) | 0.0013 (7) |
| C12 | 0.0243 (9) | 0.0204 (9) | 0.0257 (9) | −0.0013 (7) | −0.0043 (7) | 0.0044 (7) |
| C13 | 0.0187 (8) | 0.0167 (9) | 0.0383 (11) | 0.0006 (7) | −0.0014 (8) | 0.0044 (8) |
| C14 | 0.0201 (8) | 0.0153 (8) | 0.0339 (10) | 0.0008 (7) | 0.0066 (7) | −0.0026 (8) |
| C15 | 0.0214 (8) | 0.0165 (8) | 0.0211 (8) | −0.0007 (7) | 0.0024 (7) | −0.0021 (7) |
| S1—C9 | 1.6600 (18) | C4—C5 | 1.389 (3) |
| O1—C8 | 1.238 (2) | C4—H4A | 0.9500 |
| N1—C8 | 1.352 (2) | C5—C6 | 1.389 (2) |
| N1—C1 | 1.408 (2) | C5—H5A | 0.9500 |
| N1—H1N1 | 0.88 (2) | C6—C7 | 1.452 (2) |
| N2—C7 | 1.291 (2) | C7—C8 | 1.504 (2) |
| N2—N3 | 1.349 (2) | C10—C15 | 1.394 (2) |
| N3—C9 | 1.378 (2) | C10—C11 | 1.397 (2) |
| N3—H1N3 | 0.87 (2) | C11—C12 | 1.385 (2) |
| N4—C9 | 1.343 (2) | C11—H11A | 0.9500 |
| N4—C10 | 1.416 (2) | C12—C13 | 1.386 (3) |
| N4—H1N4 | 0.88 (2) | C12—H12A | 0.9500 |
| C1—C2 | 1.381 (3) | C13—C14 | 1.385 (3) |
| C1—C6 | 1.407 (2) | C13—H13A | 0.9500 |
| C2—C3 | 1.393 (3) | C14—C15 | 1.390 (2) |
| C2—H2A | 0.9500 | C14—H14A | 0.9500 |
| C3—C4 | 1.397 (2) | C15—H15A | 0.9500 |
| C3—H3A | 0.9500 | ||
| C8—N1—C1 | 111.31 (14) | N2—C7—C6 | 125.83 (15) |
| C8—N1—H1N1 | 123.0 (14) | N2—C7—C8 | 127.70 (16) |
| C1—N1—H1N1 | 125.7 (14) | C6—C7—C8 | 106.43 (14) |
| C7—N2—N3 | 117.83 (14) | O1—C8—N1 | 127.51 (15) |
| N2—N3—C9 | 120.23 (14) | O1—C8—C7 | 126.16 (16) |
| N2—N3—H1N3 | 118.7 (15) | N1—C8—C7 | 106.34 (15) |
| C9—N3—H1N3 | 120.6 (15) | N4—C9—N3 | 112.68 (15) |
| C9—N4—C10 | 132.49 (16) | N4—C9—S1 | 129.71 (14) |
| C9—N4—H1N4 | 110.5 (13) | N3—C9—S1 | 117.61 (12) |
| C10—N4—H1N4 | 116.9 (13) | C15—C10—C11 | 119.98 (15) |
| C2—C1—C6 | 122.14 (16) | C15—C10—N4 | 125.29 (15) |
| C2—C1—N1 | 128.43 (15) | C11—C10—N4 | 114.71 (15) |
| C6—C1—N1 | 109.42 (15) | C12—C11—C10 | 120.19 (17) |
| C1—C2—C3 | 117.03 (16) | C12—C11—H11A | 119.9 |
| C1—C2—H2A | 121.5 | C10—C11—H11A | 119.9 |
| C3—C2—H2A | 121.5 | C11—C12—C13 | 120.24 (16) |
| C2—C3—C4 | 121.63 (18) | C11—C12—H12A | 119.9 |
| C2—C3—H3A | 119.2 | C13—C12—H12A | 119.9 |
| C4—C3—H3A | 119.2 | C14—C13—C12 | 119.32 (16) |
| C5—C4—C3 | 120.78 (16) | C14—C13—H13A | 120.3 |
| C5—C4—H4A | 119.6 | C12—C13—H13A | 120.3 |
| C3—C4—H4A | 119.6 | C13—C14—C15 | 121.48 (17) |
| C6—C5—C4 | 118.29 (16) | C13—C14—H14A | 119.3 |
| C6—C5—H5A | 120.9 | C15—C14—H14A | 119.3 |
| C4—C5—H5A | 120.9 | C14—C15—C10 | 118.79 (16) |
| C5—C6—C1 | 120.11 (17) | C14—C15—H15A | 120.6 |
| C5—C6—C7 | 133.33 (16) | C10—C15—H15A | 120.6 |
| C1—C6—C7 | 106.50 (14) | ||
| C7—N2—N3—C9 | 173.69 (15) | C1—N1—C8—O1 | −179.73 (17) |
| C8—N1—C1—C2 | 178.50 (18) | C1—N1—C8—C7 | 0.46 (18) |
| C8—N1—C1—C6 | −0.7 (2) | N2—C7—C8—O1 | 2.3 (3) |
| C6—C1—C2—C3 | 0.1 (3) | C6—C7—C8—O1 | −179.84 (16) |
| N1—C1—C2—C3 | −179.09 (17) | N2—C7—C8—N1 | −177.88 (17) |
| C1—C2—C3—C4 | 1.1 (3) | C6—C7—C8—N1 | −0.03 (18) |
| C2—C3—C4—C5 | −1.1 (3) | C10—N4—C9—N3 | 174.00 (16) |
| C3—C4—C5—C6 | −0.1 (3) | C10—N4—C9—S1 | −6.4 (3) |
| C4—C5—C6—C1 | 1.2 (3) | N2—N3—C9—N4 | 4.1 (2) |
| C4—C5—C6—C7 | 177.76 (18) | N2—N3—C9—S1 | −175.54 (12) |
| C2—C1—C6—C5 | −1.3 (3) | C9—N4—C10—C15 | −0.6 (3) |
| N1—C1—C6—C5 | 178.05 (15) | C9—N4—C10—C11 | −179.21 (17) |
| C2—C1—C6—C7 | −178.61 (16) | C15—C10—C11—C12 | −0.6 (3) |
| N1—C1—C6—C7 | 0.69 (19) | N4—C10—C11—C12 | 178.11 (15) |
| N3—N2—C7—C6 | −176.52 (15) | C10—C11—C12—C13 | 0.2 (3) |
| N3—N2—C7—C8 | 0.9 (3) | C11—C12—C13—C14 | 0.5 (3) |
| C5—C6—C7—N2 | 0.6 (3) | C12—C13—C14—C15 | −0.8 (3) |
| C1—C6—C7—N2 | 177.50 (16) | C13—C14—C15—C10 | 0.4 (3) |
| C5—C6—C7—C8 | −177.26 (19) | C11—C10—C15—C14 | 0.3 (2) |
| C1—C6—C7—C8 | −0.40 (18) | N4—C10—C15—C14 | −178.24 (16) |
| H··· | ||||
| N1—H1 | 0.88 (2) | 2.00 (2) | 2.8737 (18) | 173.9 (18) |
| N3—H1 | 0.87 (2) | 2.07 (2) | 2.7646 (18) | 136 (2) |
| N4—H1 | 0.88 (2) | 2.05 (2) | 2.5781 (19) | 117.4 (17) |
| C11—H11 | 0.95 | 2.83 | 3.6017 (19) | 139 |
| C15—H15 | 0.95 | 2.60 | 3.2735 (19) | 128 |
| C2—H2 | 0.95 | 2.80 | 3.510 (2) | 132 |
| C13—H13 | 0.95 | 2.82 | 3.5201 (19) | 131 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C6 ring and Cg3 is the centroid of the C10–C15 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N1⋯O1i | 0.88 (2) | 2.00 (2) | 2.8737 (18) | 173.9 (18) |
| N3—H1N3⋯O1 | 0.87 (2) | 2.07 (2) | 2.7646 (18) | 136 (2) |
| N4—H1N4⋯N2 | 0.88 (2) | 2.05 (2) | 2.5781 (19) | 117.4 (17) |
| C11—H11 | 0.95 | 2.83 | 3.6017 (19) | 139 |
| C15—H15 | 0.95 | 2.60 | 3.2735 (19) | 128 |
| C2—H2 | 0.95 | 2.80 | 3.510 (2) | 132 |
| C13—H13 | 0.95 | 2.82 | 3.5201 (19) | 131 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .