Literature DB >> 21587842

4-(2-Ethyl-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Humayun Pervez, Muhammad Yaqub, Muhammad Ramzan, M Nawaz Tahir, Mohammad S Iqbal.   

Abstract

The title compound, C(17)H(16)N(4)OS, is stabilized in the form of a two-dimensional polymeric network due to inter-molecular N-H⋯S and N-H⋯O hydrogen bonds. An intra-molecular N-H⋯N hydrogen bond forms an S(5) ring, whereas inter-actions of the N-H⋯O and C-H⋯S types complete S(6) ring motifs. π-π inter-actions with a centroid-centroid distance of 3.6514 (10) Å are found between the ethyl-substituted benzene ring and the heterocyclic ring of the isatin derivative.

Entities:  

Year:  2010        PMID: 21587842      PMCID: PMC3006908          DOI: 10.1107/S1600536810021264

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of biologically important N 4-aryl­substituted isatin-3-thio­semicarbazones, see: Pervez et al. (2007 ▶). For a related structure, see: Pervez et al. (2010 ▶): For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H16N4OS M = 324.40 Monoclinic, a = 25.6769 (7) Å b = 7.4340 (2) Å c = 16.6548 (5) Å β = 96.248 (1)° V = 3160.22 (15) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.32 × 0.24 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.942, T max = 0.952 11310 measured reflections 2823 independent reflections 2400 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.04 2823 reflections 209 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810021264/bq2219sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021264/bq2219Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N4OSF(000) = 1360
Mr = 324.40Dx = 1.364 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2400 reflections
a = 25.6769 (7) Åθ = 2.9–25.3°
b = 7.4340 (2) ŵ = 0.22 mm1
c = 16.6548 (5) ÅT = 296 K
β = 96.248 (1)°Prism, yellow
V = 3160.22 (15) Å30.32 × 0.24 × 0.22 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer2823 independent reflections
Radiation source: fine-focus sealed tube2400 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.9°
ω scansh = −30→30
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −7→8
Tmin = 0.942, Tmax = 0.952l = −19→19
11310 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0406P)2 + 2.640P] where P = (Fo2 + 2Fc2)/3
2823 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.23890 (2)−0.14366 (7)0.38931 (2)0.0442 (2)
O10.06872 (4)−0.02675 (19)0.27866 (7)0.0479 (4)
N10.02670 (5)0.0792 (2)0.15804 (8)0.0442 (5)
N20.16415 (5)0.02887 (19)0.19012 (8)0.0349 (4)
N30.17539 (5)−0.03419 (19)0.26578 (8)0.0372 (4)
N40.26102 (5)−0.0071 (2)0.24633 (8)0.0393 (4)
C10.06870 (6)0.0291 (2)0.20906 (10)0.0381 (5)
C20.04184 (6)0.1426 (2)0.08419 (10)0.0391 (5)
C30.01121 (7)0.2144 (3)0.01920 (11)0.0516 (6)
C40.03640 (8)0.2668 (3)−0.04645 (11)0.0547 (7)
C50.09005 (8)0.2485 (3)−0.04709 (11)0.0495 (6)
C60.12070 (7)0.1798 (2)0.01934 (9)0.0409 (5)
C70.09608 (6)0.1274 (2)0.08544 (9)0.0341 (5)
C80.11566 (6)0.0567 (2)0.16408 (9)0.0333 (5)
C90.22671 (6)−0.0580 (2)0.29697 (9)0.0342 (5)
C100.31682 (6)−0.0090 (2)0.25921 (10)0.0365 (5)
C110.34405 (6)−0.0684 (2)0.19598 (10)0.0392 (5)
C120.39859 (7)−0.0623 (3)0.20944 (12)0.0511 (7)
C130.42445 (7)0.0001 (3)0.28101 (13)0.0585 (7)
C140.39670 (7)0.0588 (3)0.34154 (12)0.0546 (7)
C150.34255 (7)0.0550 (3)0.33083 (11)0.0452 (6)
C160.31486 (8)−0.1327 (3)0.11775 (11)0.0495 (6)
C170.34737 (10)−0.2230 (3)0.05832 (13)0.0717 (9)
H1−0.005190.073230.169150.0531*
H3−0.024810.227160.019290.0619*
H3A0.15051−0.059500.294540.0446*
H40.016730.31566−0.091390.0656*
H4A0.247650.031770.199990.0471*
H50.105610.28267−0.092610.0594*
H60.156810.169240.019570.0490*
H120.41813−0.101530.168960.0613*
H130.460880.002280.288090.0702*
H140.414180.101010.389690.0655*
H150.323470.095240.371680.0543*
H16A0.29714−0.030250.091040.0595*
H16B0.28807−0.216710.130560.0595*
H17A0.37156−0.137600.040150.1076*
H17B0.32467−0.266650.012890.1076*
H17C0.36643−0.321880.084360.1076*
U11U22U33U12U13U23
S10.0421 (3)0.0538 (3)0.0371 (2)0.0059 (2)0.0058 (2)0.0088 (2)
O10.0369 (6)0.0701 (9)0.0379 (7)0.0024 (6)0.0097 (5)0.0099 (6)
N10.0265 (7)0.0667 (10)0.0396 (8)−0.0015 (7)0.0045 (6)0.0036 (7)
N20.0306 (7)0.0406 (8)0.0334 (7)0.0011 (6)0.0036 (5)0.0002 (6)
N30.0290 (7)0.0488 (9)0.0345 (7)0.0018 (6)0.0061 (5)0.0052 (6)
N40.0294 (7)0.0548 (9)0.0339 (7)0.0038 (6)0.0043 (5)0.0074 (6)
C10.0321 (8)0.0449 (10)0.0379 (9)−0.0012 (7)0.0060 (7)−0.0007 (7)
C20.0345 (8)0.0455 (10)0.0368 (8)−0.0021 (7)0.0013 (7)−0.0010 (7)
C30.0384 (9)0.0649 (13)0.0495 (10)0.0047 (9)−0.0042 (8)0.0045 (9)
C40.0584 (12)0.0610 (13)0.0418 (10)0.0041 (10)−0.0071 (9)0.0092 (9)
C50.0600 (12)0.0511 (12)0.0378 (9)−0.0038 (9)0.0069 (8)0.0048 (8)
C60.0425 (9)0.0449 (10)0.0356 (9)−0.0032 (8)0.0063 (7)−0.0013 (7)
C70.0331 (8)0.0358 (9)0.0329 (8)−0.0007 (7)0.0020 (6)−0.0035 (7)
C80.0304 (8)0.0374 (9)0.0325 (8)−0.0002 (7)0.0049 (6)−0.0018 (7)
C90.0314 (8)0.0344 (9)0.0372 (9)0.0042 (6)0.0053 (6)−0.0032 (7)
C100.0317 (8)0.0386 (9)0.0394 (9)0.0028 (7)0.0054 (7)0.0084 (7)
C110.0408 (9)0.0359 (9)0.0424 (9)0.0052 (7)0.0118 (7)0.0102 (7)
C120.0419 (10)0.0567 (12)0.0583 (12)0.0099 (9)0.0214 (9)0.0154 (9)
C130.0308 (9)0.0763 (15)0.0682 (13)−0.0005 (9)0.0051 (9)0.0178 (11)
C140.0410 (10)0.0684 (14)0.0523 (11)−0.0099 (9)−0.0040 (8)0.0095 (10)
C150.0391 (9)0.0541 (11)0.0426 (10)−0.0009 (8)0.0048 (7)0.0029 (8)
C160.0587 (11)0.0465 (11)0.0448 (10)0.0051 (9)0.0119 (8)0.0032 (8)
C170.0976 (17)0.0655 (15)0.0572 (13)−0.0001 (13)0.0317 (12)−0.0070 (11)
S1—C91.6625 (15)C10—C151.384 (2)
O1—C11.231 (2)C11—C161.508 (3)
N1—C11.351 (2)C11—C121.395 (2)
N1—C21.411 (2)C12—C131.380 (3)
N2—N31.3460 (19)C13—C141.368 (3)
N2—C81.290 (2)C14—C151.383 (3)
N3—C91.374 (2)C16—C171.519 (3)
N4—C91.339 (2)C3—H30.9300
N4—C101.426 (2)C4—H40.9300
N1—H10.8600C5—H50.9300
N3—H3A0.8600C6—H60.9300
N4—H4A0.8600C12—H120.9300
C1—C81.501 (2)C13—H130.9300
C2—C71.395 (2)C14—H140.9300
C2—C31.375 (2)C15—H150.9300
C3—C41.386 (3)C16—H16A0.9700
C4—C51.386 (3)C16—H16B0.9700
C5—C61.384 (2)C17—H17A0.9600
C6—C71.384 (2)C17—H17B0.9600
C7—C81.450 (2)C17—H17C0.9600
C10—C111.398 (2)
S1···C153.283 (2)C1···H1iii2.7600
S1···N4i3.5220 (15)C1···H3A2.4900
S1···H152.8500C5···H17Avii3.0500
S1···H6ii3.1900C9···H152.8900
S1···H4Ai2.8700C9···H16Biv2.8500
S1···H16Ai3.0500C12···H5vii2.8400
O1···N23.0226 (17)C12···H17A2.8800
O1···N32.7711 (17)C12···H17C2.8900
O1···C5ii3.331 (2)C16···H4A2.6200
O1···N1iii2.8805 (17)C17···H122.6000
O1···H1iii2.0700H1···O1iii2.0700
O1···H3A2.1000H1···C1iii2.7600
N1···O1iii2.8805 (17)H3A···O12.1000
N2···O13.0226 (17)H3A···C12.4900
N2···N42.5745 (18)H4A···N22.1300
N3···O12.7711 (17)H4A···C162.6200
N4···C9iv3.437 (2)H4A···H16A2.3700
N4···N22.5745 (18)H4A···H16B2.4700
N4···S1iv3.5220 (15)H4A···S1iv2.8700
N2···H4A2.1300H5···C12vii2.8400
N4···H16B2.6300H6···S1vi3.1900
N4···H16A2.8500H12···C172.6000
C1···C13iv3.509 (3)H12···H17A2.3500
C1···C12iv3.395 (3)H12···H17C2.4500
C2···C3v3.370 (3)H13···H13viii2.4900
C2···C13iv3.526 (3)H15···S12.8500
C3···C3v3.290 (3)H15···C92.8900
C3···C2v3.370 (3)H16A···N42.8500
C5···O1vi3.331 (2)H16A···H4A2.3700
C7···C14iv3.428 (3)H16A···S1iv3.0500
C8···C12iv3.572 (3)H16B···N42.6300
C9···N4i3.437 (2)H16B···H4A2.4700
C12···C8i3.572 (3)H16B···C9i2.8500
C12···C1i3.395 (3)H17A···C122.8800
C13···C2i3.526 (3)H17A···H122.3500
C13···C1i3.509 (3)H17A···C5vii3.0500
C14···C7i3.428 (3)H17C···C122.8900
C15···S13.283 (2)H17C···H122.4500
C1—N1—C2111.33 (13)C12—C11—C16123.02 (16)
N3—N2—C8118.13 (13)C11—C12—C13122.01 (17)
N2—N3—C9119.86 (13)C12—C13—C14120.24 (17)
C9—N4—C10128.46 (14)C13—C14—C15119.71 (18)
C2—N1—H1124.00C10—C15—C14119.83 (17)
C1—N1—H1124.00C11—C16—C17116.51 (17)
C9—N3—H3A120.00C2—C3—H3121.00
N2—N3—H3A120.00C4—C3—H3121.00
C9—N4—H4A116.00C3—C4—H4119.00
C10—N4—H4A116.00C5—C4—H4119.00
O1—C1—N1127.14 (14)C4—C5—H5120.00
O1—C1—C8126.71 (14)C6—C5—H5120.00
N1—C1—C8106.14 (13)C5—C6—H6121.00
N1—C2—C7109.23 (13)C7—C6—H6121.00
C3—C2—C7121.86 (15)C11—C12—H12119.00
N1—C2—C3128.89 (15)C13—C12—H12119.00
C2—C3—C4117.02 (17)C12—C13—H13120.00
C3—C4—C5121.90 (18)C14—C13—H13120.00
C4—C5—C6120.63 (17)C13—C14—H14120.00
C5—C6—C7118.08 (17)C15—C14—H14120.00
C2—C7—C6120.47 (15)C10—C15—H15120.00
C2—C7—C8106.88 (13)C14—C15—H15120.00
C6—C7—C8132.64 (15)C11—C16—H16A108.00
N2—C8—C7126.10 (14)C11—C16—H16B108.00
N2—C8—C1127.49 (14)C17—C16—H16A108.00
C1—C8—C7106.38 (13)C17—C16—H16B108.00
S1—C9—N3118.38 (12)H16A—C16—H16B107.00
S1—C9—N4128.35 (12)C16—C17—H17A109.00
N3—C9—N4113.27 (13)C16—C17—H17B109.00
C11—C10—C15121.82 (15)C16—C17—H17C109.00
N4—C10—C15120.28 (15)H17A—C17—H17B109.00
N4—C10—C11117.83 (14)H17A—C17—H17C109.00
C10—C11—C12116.40 (15)H17B—C17—H17C109.00
C10—C11—C16120.58 (15)
C1—N1—C2—C3−176.03 (18)C2—C3—C4—C5−0.1 (3)
C2—N1—C1—O1177.74 (16)C3—C4—C5—C6−1.3 (3)
C2—N1—C1—C8−1.78 (17)C4—C5—C6—C71.1 (3)
C1—N1—C2—C72.28 (18)C5—C6—C7—C8−177.87 (17)
N3—N2—C8—C7178.61 (14)C5—C6—C7—C20.5 (2)
C8—N2—N3—C9−177.12 (14)C2—C7—C8—N2−177.51 (15)
N3—N2—C8—C10.9 (2)C6—C7—C8—N21.1 (3)
N2—N3—C9—S1−177.65 (12)C6—C7—C8—C1179.21 (16)
N2—N3—C9—N42.2 (2)C2—C7—C8—C10.65 (16)
C10—N4—C9—S1−1.7 (3)N4—C10—C11—C12177.69 (16)
C9—N4—C10—C15−45.5 (2)N4—C10—C11—C16−1.6 (2)
C10—N4—C9—N3178.48 (15)C15—C10—C11—C121.0 (2)
C9—N4—C10—C11137.74 (17)C15—C10—C11—C16−178.32 (17)
O1—C1—C8—N2−0.7 (3)N4—C10—C15—C14−177.59 (18)
O1—C1—C8—C7−178.83 (16)C11—C10—C15—C14−0.9 (3)
N1—C1—C8—N2178.80 (16)C10—C11—C12—C13−0.4 (3)
N1—C1—C8—C70.68 (16)C16—C11—C12—C13178.81 (19)
N1—C2—C3—C4179.90 (17)C10—C11—C16—C17−170.19 (16)
C7—C2—C3—C41.8 (3)C12—C11—C16—C1710.6 (3)
N1—C2—C7—C6179.51 (14)C11—C12—C13—C14−0.1 (3)
N1—C2—C7—C8−1.72 (17)C12—C13—C14—C150.2 (3)
C3—C2—C7—C6−2.0 (2)C13—C14—C15—C100.4 (3)
C3—C2—C7—C8176.74 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1iii0.86002.07002.8805 (17)157.00
N3—H3A···O10.86002.10002.7711 (17)134.00
N4—H4A···N20.86002.13002.5745 (18)111.00
N4—H4A···S1iv0.86002.87003.5220 (15)133.00
C15—H15···S10.93002.85003.283 (2)110.00
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.072.88 (17)157
N3—H3A⋯O10.862.102.7711 (17)134
N4—H4A⋯N20.862.132.5745 (18)111
N4—H4A⋯S1ii0.862.873.5220 (15)133
C15—H15⋯S10.932.853.283 (2)110

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some N4-substituted isatin-3-thiosemicarbazones.

Authors:  H Pervez; M S Iqbal; M Y Tahir; M I Choudhary; K M Khan
Journal:  Nat Prod Res       Date:  2007-11       Impact factor: 2.861

3.  4-(2-Fluoro-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Muhammad Yaqub; Muhammad Ramzan; Mohammad S Iqbal; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  7 in total

1.  (Z)-N-Methyl-2-(5-nitro-2-oxoindolin-3-yl-idene)hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

2.  1-[2-Oxo-5-(trifluoro-meth-oxy)indolin-3-yl-idene]-4-[4-(trifluoro-methyl)-phen-yl]thio-semicarbazide.

Authors:  Humayun Pervez; Mohammad S Iqbal; Naveeda Saira; Muhammad Yaqub; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

3.  N-{2-[N-(4-Methyl-phen-yl)oxamo-yl]phen-yl}propanamide.

Authors:  Humayun Pervez; Maqbool Ahmad; Muhammad Yaqub; M Nawaz Tahir; Naveeda Saira
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

4.  (Z)-2-(5-Methyl-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

5.  (Z)-2-(5-Fluoro-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

6.  (Z)-2-(5-Chloro-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

7.  (Z)-2-(2-Oxoindolin-3-yl-idene)-N-phenylhydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07
  7 in total

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