Literature DB >> 22199669

(Z)-2-(5-Chloro-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Amna Qasem Ali, Naser Eltaher Eltayeb, Siang Guan Teoh, Abdussalam Salhin, Hoong-Kun Fun.   

Abstract

In the title compound, C(15)H(11)ClN(4)n class="Chemical">OS, the dihedral angle between the nine-membered 5-chloro-indolin-2-one ring system and the benzene ring is 10.00 (6)°. Intra-molecular cyclic N-H⋯O and C-H⋯S hydrogen-bonding inter-actions [graph set S(6)] are present in the N-N-C-N chain between the ring systems. In the crystal, mol-ecules form centrosymmetric cyclic dimers through inter-molecular N-H⋯O hydrogen bonds [graph-set R(2) (2)(8)] and are extended by C-H⋯Cl inter-actions into infinite chains which propagate along [100].

Entities:  

Year:  2011        PMID: 22199669      PMCID: PMC3238816          DOI: 10.1107/S1600536811044199

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ferrari et al. (2002 ▶); Pervez et al. (2010 ▶); Ramzan et al. (2010 ▶). For various biological activities of Schiff bases, see: Bhandari et al. (2008 ▶); Bhardwaj et al. (2010 ▶); Pandeya et al. (1999 ▶); Sridhar et al. (2002 ▶); Suryavanshi & Pai (2006 ▶). For cytotoxic and anti­cancer activities of n class="Chemical">isatin and its derivatives, see: Vine et al. (2009 ▶). For bond-length data, see; Allen et al. (1987 ▶). For graph-set analysis, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H11ClN4OS M = 330.79 Monoclinic, a = 5.7117 (2) Å b = 17.9510 (7) Å c = 14.2455 (5) Å β = 91.262 (2)° V = 1460.25 (9) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 100 K 0.53 × 0.16 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.812, T max = 0.950 15819 measured reflections 4183 independent reflections 3424 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 1.04 4183 reflections 211 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044199/zs2150sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044199/zs2150Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044199/zs2150Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11ClN4OSF(000) = 680
Mr = 330.79Dx = 1.505 Mg m3
Monoclinic, P21/cMelting point = 521.3–521.9 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 5.7117 (2) ÅCell parameters from 6388 reflections
b = 17.9510 (7) Åθ = 2.3–29.8°
c = 14.2455 (5) ŵ = 0.41 mm1
β = 91.262 (2)°T = 100 K
V = 1460.25 (9) Å3Block, orange
Z = 40.53 × 0.16 × 0.13 mm
Bruker APEXII CCD diffractometer4183 independent reflections
Radiation source: fine-focus sealed tube3424 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 29.9°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −7→7
Tmin = 0.812, Tmax = 0.950k = −16→25
15819 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0482P)2 + 0.4941P] where P = (Fo2 + 2Fc2)/3
4183 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.08445 (7)0.29509 (2)0.51315 (3)0.02175 (10)
Cl10.74643 (8)0.58625 (3)1.01336 (3)0.03431 (13)
O10.71079 (18)0.45044 (6)0.51237 (8)0.0202 (2)
N10.9178 (2)0.52737 (7)0.61568 (10)0.0192 (3)
N20.3993 (2)0.43359 (7)0.68077 (9)0.0169 (2)
N30.3263 (2)0.39602 (7)0.60374 (9)0.0176 (2)
N40.0298 (2)0.34863 (7)0.69041 (9)0.0162 (2)
C10.7024 (2)0.51529 (8)0.74926 (11)0.0175 (3)
C20.6515 (3)0.52627 (8)0.84293 (11)0.0202 (3)
H2A0.51890.50550.86920.024*
C30.8066 (3)0.56950 (9)0.89592 (11)0.0213 (3)
C41.0055 (3)0.60157 (9)0.85810 (12)0.0226 (3)
H4A1.10510.63010.89600.027*
C51.0559 (3)0.59112 (9)0.76381 (12)0.0218 (3)
H5A1.18760.61250.73760.026*
C60.9031 (2)0.54775 (8)0.71060 (11)0.0177 (3)
C70.7407 (2)0.48082 (8)0.58967 (11)0.0176 (3)
C80.5894 (2)0.47276 (8)0.67398 (10)0.0164 (3)
C90.1396 (2)0.34679 (8)0.60775 (10)0.0163 (3)
C10−0.1615 (2)0.30657 (8)0.72387 (10)0.0158 (3)
C11−0.3209 (2)0.26888 (8)0.66549 (11)0.0175 (3)
H11A−0.30360.26900.60070.021*
C12−0.5073 (3)0.23099 (8)0.70597 (12)0.0205 (3)
H12A−0.61270.20500.66750.025*
C13−0.5381 (3)0.23133 (9)0.80179 (12)0.0227 (3)
H13A−0.66350.20610.82770.027*
C14−0.3798 (3)0.26976 (10)0.85915 (12)0.0248 (3)
H14A−0.40010.27070.92370.030*
C15−0.1915 (3)0.30674 (9)0.82049 (11)0.0212 (3)
H15A−0.08490.33180.85940.025*
H1N11.030 (4)0.5395 (14)0.5766 (17)0.049 (7)*
H1N30.406 (4)0.3978 (11)0.5537 (15)0.029 (5)*
H1N40.095 (3)0.3761 (11)0.7308 (14)0.026 (5)*
U11U22U33U12U13U23
S10.02155 (19)0.0258 (2)0.01799 (19)−0.00283 (14)0.00246 (14)−0.00359 (14)
Cl10.0431 (3)0.0386 (3)0.0214 (2)−0.01947 (19)0.00487 (17)−0.00397 (16)
O10.0156 (5)0.0242 (5)0.0208 (5)0.0009 (4)0.0028 (4)0.0007 (4)
N10.0136 (6)0.0218 (6)0.0225 (7)−0.0018 (5)0.0038 (5)0.0018 (5)
N20.0141 (5)0.0175 (6)0.0192 (6)0.0004 (4)0.0003 (5)0.0011 (5)
N30.0148 (6)0.0202 (6)0.0178 (6)−0.0015 (4)0.0032 (5)0.0001 (5)
N40.0140 (5)0.0193 (6)0.0154 (6)−0.0035 (4)0.0003 (4)−0.0013 (5)
C10.0140 (6)0.0153 (6)0.0233 (8)−0.0001 (5)0.0017 (5)0.0022 (5)
C20.0174 (7)0.0198 (7)0.0235 (8)−0.0035 (5)0.0021 (6)0.0023 (6)
C30.0231 (7)0.0199 (7)0.0209 (7)−0.0022 (6)0.0007 (6)0.0009 (6)
C40.0200 (7)0.0200 (7)0.0277 (8)−0.0032 (5)−0.0023 (6)0.0022 (6)
C50.0144 (6)0.0222 (7)0.0288 (8)−0.0025 (5)0.0025 (6)0.0016 (6)
C60.0136 (6)0.0166 (6)0.0231 (7)0.0017 (5)0.0033 (5)0.0026 (5)
C70.0126 (6)0.0182 (7)0.0221 (7)0.0028 (5)0.0027 (5)0.0046 (5)
C80.0127 (6)0.0179 (7)0.0188 (7)0.0010 (5)0.0018 (5)0.0026 (5)
C90.0132 (6)0.0174 (6)0.0183 (7)0.0014 (5)−0.0007 (5)0.0023 (5)
C100.0118 (6)0.0165 (6)0.0192 (7)0.0003 (5)0.0002 (5)0.0017 (5)
C110.0136 (6)0.0188 (7)0.0200 (7)0.0008 (5)−0.0017 (5)−0.0002 (5)
C120.0136 (6)0.0180 (7)0.0298 (8)−0.0002 (5)−0.0025 (6)0.0007 (6)
C130.0143 (6)0.0245 (8)0.0295 (9)−0.0013 (5)0.0026 (6)0.0059 (6)
C140.0187 (7)0.0364 (9)0.0192 (8)−0.0017 (6)0.0023 (6)0.0058 (7)
C150.0154 (7)0.0301 (8)0.0182 (7)−0.0038 (6)−0.0011 (5)0.0005 (6)
S1—C91.6606 (15)C3—C41.392 (2)
Cl1—C31.7416 (17)C4—C51.393 (2)
O1—C71.2374 (18)C4—H4A0.9300
N1—C71.3573 (19)C5—C61.383 (2)
N1—C61.405 (2)C5—H5A0.9300
N1—H1N10.88 (3)C7—C81.502 (2)
N2—C81.2992 (18)C10—C151.391 (2)
N2—N31.3462 (18)C10—C111.395 (2)
N3—C91.3872 (18)C11—C121.398 (2)
N3—H1N30.85 (2)C11—H11A0.9300
N4—C91.3467 (19)C12—C131.380 (2)
N4—C101.4190 (18)C12—H12A0.9300
N4—H1N40.84 (2)C13—C141.389 (2)
C1—C21.386 (2)C13—H13A0.9300
C1—C61.409 (2)C14—C151.388 (2)
C1—C81.456 (2)C14—H14A0.9300
C2—C31.389 (2)C15—H15A0.9300
C2—H2A0.9300
C7—N1—C6111.28 (13)O1—C7—N1126.99 (14)
C7—N1—H1N1121.6 (16)O1—C7—C8126.77 (13)
C6—N1—H1N1127.0 (16)N1—C7—C8106.23 (13)
C8—N2—N3117.04 (13)N2—C8—C1125.93 (14)
N2—N3—C9120.67 (13)N2—C8—C7127.47 (14)
N2—N3—H1N3120.1 (14)C1—C8—C7106.56 (12)
C9—N3—H1N3118.8 (14)N4—C9—N3113.18 (13)
C9—N4—C10131.11 (13)N4—C9—S1129.76 (11)
C9—N4—H1N4113.9 (14)N3—C9—S1117.06 (11)
C10—N4—H1N4114.6 (14)C15—C10—C11119.87 (13)
C2—C1—C6120.49 (14)C15—C10—N4116.35 (13)
C2—C1—C8133.22 (13)C11—C10—N4123.73 (13)
C6—C1—C8106.28 (13)C10—C11—C12118.89 (14)
C1—C2—C3117.25 (14)C10—C11—H11A120.6
C1—C2—H2A121.4C12—C11—H11A120.6
C3—C2—H2A121.4C13—C12—C11121.37 (14)
C2—C3—C4122.48 (15)C13—C12—H12A119.3
C2—C3—Cl1118.78 (12)C11—C12—H12A119.3
C4—C3—Cl1118.71 (12)C12—C13—C14119.25 (14)
C3—C4—C5120.36 (15)C12—C13—H13A120.4
C3—C4—H4A119.8C14—C13—H13A120.4
C5—C4—H4A119.8C15—C14—C13120.28 (15)
C6—C5—C4117.56 (14)C15—C14—H14A119.9
C6—C5—H5A121.2C13—C14—H14A119.9
C4—C5—H5A121.2C14—C15—C10120.34 (14)
C5—C6—N1128.57 (14)C14—C15—H15A119.8
C5—C6—C1121.85 (15)C10—C15—H15A119.8
N1—C6—C1109.57 (13)
C8—N2—N3—C9173.15 (13)C6—C1—C8—N2179.26 (14)
C6—C1—C2—C3−0.6 (2)C2—C1—C8—C7−177.07 (15)
C8—C1—C2—C3177.83 (15)C6—C1—C8—C71.51 (15)
C1—C2—C3—C40.5 (2)O1—C7—C8—N2−1.1 (2)
C1—C2—C3—Cl1178.76 (11)N1—C7—C8—N2179.62 (14)
C2—C3—C4—C50.1 (2)O1—C7—C8—C1176.64 (14)
Cl1—C3—C4—C5−178.24 (12)N1—C7—C8—C1−2.68 (15)
C3—C4—C5—C6−0.4 (2)C10—N4—C9—N3−178.02 (13)
C4—C5—C6—N1−178.16 (14)C10—N4—C9—S11.7 (2)
C4—C5—C6—C10.3 (2)N2—N3—C9—N47.47 (19)
C7—N1—C6—C5176.63 (15)N2—N3—C9—S1−172.31 (10)
C7—N1—C6—C1−1.99 (16)C9—N4—C10—C15162.39 (15)
C2—C1—C6—C50.2 (2)C9—N4—C10—C11−20.3 (2)
C8—C1—C6—C5−178.57 (13)C15—C10—C11—C12−0.8 (2)
C2—C1—C6—N1178.95 (13)N4—C10—C11—C12−178.04 (13)
C8—C1—C6—N10.15 (15)C10—C11—C12—C131.1 (2)
C6—N1—C7—O1−176.46 (14)C11—C12—C13—C14−0.4 (2)
C6—N1—C7—C82.86 (16)C12—C13—C14—C15−0.6 (2)
N3—N2—C8—C1−177.80 (13)C13—C14—C15—C100.9 (2)
N3—N2—C8—C7−0.5 (2)C11—C10—C15—C14−0.2 (2)
C2—C1—C8—N20.7 (3)N4—C10—C15—C14177.23 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.89 (2)1.98 (2)2.8560 (17)171 (2)
N3—H1N3···O10.86 (2)2.08 (2)2.7563 (16)135.9 (19)
N4—H1N4···N20.84 (2)2.156 (18)2.6099 (17)113.8 (16)
C2—H2A···Cl1ii0.932.813.6935 (17)158
C11—H11A···S10.932.613.2423 (14)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1i0.89 (2)1.98 (2)2.8560 (17)171 (2)
N3—H1N3⋯O10.86 (2)2.08 (2)2.7563 (16)135.9 (19)
C2—H2A⋯Cl1ii0.932.813.6935 (17)158
C11—H11A⋯S10.932.613.2423 (14)126

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Seshaiah Krishnan Sridhar; Surendra N Pandeya; James P Stables; Atmakuru Ramesh
Journal:  Eur J Pharm Sci       Date:  2002-08       Impact factor: 4.384

Review 3.  Cytotoxic and anticancer activities of isatin and its derivatives: a comprehensive review from 2000-2008.

Authors:  K L Vine; L Matesic; J M Locke; M Ranson; D Skropeta
Journal:  Anticancer Agents Med Chem       Date:  2009-05       Impact factor: 2.505

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Journal:  Bioorg Med Chem       Date:  2007-11-19       Impact factor: 3.641

5.  1-(2-Oxoindolin-3-yl-idene)-4-[2-(tri-fluoro-meth-yl)phen-yl]thio-semicarbazide.

Authors:  Muhammad Ramzan; Humayun Pervez; Muhammad Yaqub; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

6.  4-(2-Ethyl-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Muhammad Yaqub; Muhammad Ramzan; M Nawaz Tahir; Mohammad S Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  8 in total

1.  (Z)-N-Methyl-2-(5-nitro-2-oxoindolin-3-yl-idene)hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

2.  (Z)-2-(5-Methyl-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

3.  (Z)-2-(5-Fluoro-2-oxoindolin-3-yl-idene)-N-phenyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

4.  Bis[2-(2-oxoindolin-3-yl-idene)-N-phenylhydrazinecarbothio-amidato-κ(3)O,N(2),S]nickel(II) dimethyl-formamide monosolvate.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-04

5.  (Z)-2-(2-Oxoindolin-3-yl-idene)-N-phenylhydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07

6.  (Z)-N-Methyl-2-(5-methyl-2-oxoindolin-3-yl-idene)hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

7.  (Z)-2-(5-Chloro-2-oxoindolin-3-yl-idene)-N-methyl-hydrazinecarbothio-amide.

Authors:  Amna Qasem Ali; Naser Eltaher Eltayeb; Siang Guan Teoh; Abdussalam Salhin; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07

8.  2-(5-Chloro-2-oxoindolin-3-yl-idene)hydrazinecarbo-thio-amide.

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  8 in total

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