Literature DB >> 22259558

2-(5-Bromo-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(13)H(13)BrO(3)S, was prepared by alkaline hydrolysis of ethyl 2-(5-bromo-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetate. In the crystal, the carboxyl groups are involved in inter-molecular O-H⋯O hydrogen bonds, which link the mol-ecules into dimers. These dimers are further packed into stacks along the c axis by inter-molecular C-H⋯π inter-actions, and by slipped π-π inter-actions between the furan rings of adjacent mol-ecules [centroid-centroid distance = 3.472 (2) Å, inter-planar distance = 3.398 (2) Å and slippage = 0.713 (2) Å].

Entities:  

Year:  2011        PMID: 22259558      PMCID: PMC3254414          DOI: 10.1107/S1600536811052160

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the crystal structures of related compounds, see: Choi et al. (2009 ▶).

Experimental

Crystal data

C13H13BrO3S M = 329.20 Triclinic, a = 7.4689 (3) Å b = 9.9449 (4) Å c = 10.0653 (4) Å α = 98.415 (2)° β = 102.146 (2)° γ = 110.341 (3)° V = 665.38 (5) Å3 Z = 2 Mo Kα radiation μ = 3.24 mm−1 T = 296 K 0.24 × 0.17 × 0.10 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.510, T max = 0.738 11869 measured reflections 3082 independent reflections 2731 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.064 S = 1.03 3082 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052160/bg2430sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052160/bg2430Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052160/bg2430Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13BrO3SZ = 2
Mr = 329.20F(000) = 332
Triclinic, P1Dx = 1.643 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4689 (3) ÅCell parameters from 5830 reflections
b = 9.9449 (4) Åθ = 2.3–27.5°
c = 10.0653 (4) ŵ = 3.24 mm1
α = 98.415 (2)°T = 296 K
β = 102.146 (2)°Block, colourless
γ = 110.341 (3)°0.24 × 0.17 × 0.10 mm
V = 665.38 (5) Å3
Bruker SMART APEXII CCD diffractometer3082 independent reflections
Radiation source: rotating anode2731 reflections with I > 2σ(I)
graphite multilayerRint = 0.030
Detector resolution: 10.0 pixels mm-1θmax = 27.6°, θmin = 2.1°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −12→12
Tmin = 0.510, Tmax = 0.738l = −13→13
11869 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: difference Fourier map
wR(F2) = 0.064H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0351P)2 + 0.1792P] where P = (Fo2 + 2Fc2)/3
3082 reflections(Δ/σ)max = 0.001
169 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.19969 (3)−0.066508 (19)0.14451 (2)0.03256 (8)
S10.19347 (6)0.56388 (5)0.18733 (4)0.02002 (10)
O10.71390 (18)0.55476 (13)0.17068 (13)0.0206 (2)
O20.8525 (2)1.01742 (15)0.34019 (17)0.0322 (3)
H2O0.925 (4)1.059 (3)0.409 (3)0.050 (9)*
O30.8861 (2)0.82564 (14)0.41728 (14)0.0290 (3)
C10.4055 (2)0.52528 (18)0.18780 (17)0.0180 (3)
C20.4198 (2)0.38295 (18)0.17355 (17)0.0176 (3)
C30.2914 (3)0.24052 (18)0.16819 (18)0.0196 (3)
H30.16270.22020.17490.024*
C40.3645 (3)0.13091 (19)0.15246 (18)0.0213 (3)
C50.5565 (3)0.1574 (2)0.14170 (19)0.0227 (4)
H50.59890.07990.13160.027*
C60.6840 (3)0.2986 (2)0.14606 (19)0.0223 (4)
H60.81190.31850.13790.027*
C70.6116 (2)0.40805 (18)0.16307 (17)0.0190 (3)
C80.5840 (3)0.62221 (18)0.18556 (17)0.0184 (3)
C90.6588 (3)0.78314 (18)0.19365 (18)0.0207 (3)
H9A0.54710.81310.18090.025*
H9B0.71700.80190.11720.025*
C100.8114 (3)0.87651 (19)0.32922 (19)0.0210 (3)
C110.2061 (3)0.6058 (2)0.37390 (19)0.0252 (4)
H110.08650.62370.37950.030*
C120.3829 (3)0.7457 (2)0.4566 (2)0.0377 (5)
H12A0.37680.76820.55110.056*
H12B0.38030.82590.41440.056*
H12C0.50380.73170.45650.056*
C130.1986 (3)0.4754 (2)0.4379 (2)0.0326 (4)
H13A0.31100.45160.43140.049*
H13B0.07800.39160.38820.049*
H13C0.20200.50040.53440.049*
U11U22U33U12U13U23
Br10.03694 (13)0.01654 (10)0.04563 (14)0.00761 (8)0.01796 (10)0.00961 (8)
S10.0193 (2)0.0200 (2)0.0201 (2)0.00800 (17)0.00334 (17)0.00490 (16)
O10.0187 (6)0.0170 (6)0.0213 (6)0.0032 (5)0.0045 (5)0.0012 (5)
O20.0399 (8)0.0150 (6)0.0274 (8)0.0067 (6)−0.0091 (7)−0.0003 (5)
O30.0344 (7)0.0161 (6)0.0251 (7)0.0052 (6)−0.0054 (6)0.0028 (5)
C10.0203 (8)0.0175 (8)0.0139 (8)0.0061 (7)0.0033 (6)0.0025 (6)
C20.0196 (8)0.0176 (8)0.0125 (8)0.0058 (7)0.0024 (6)0.0012 (6)
C30.0208 (8)0.0190 (8)0.0179 (8)0.0061 (7)0.0063 (7)0.0041 (6)
C40.0249 (9)0.0168 (8)0.0186 (9)0.0049 (7)0.0051 (7)0.0035 (6)
C50.0270 (9)0.0209 (8)0.0203 (9)0.0119 (7)0.0041 (7)0.0025 (7)
C60.0190 (8)0.0246 (9)0.0205 (9)0.0077 (7)0.0043 (7)0.0011 (7)
C70.0193 (8)0.0189 (8)0.0137 (8)0.0034 (7)0.0028 (6)0.0013 (6)
C80.0214 (8)0.0177 (8)0.0134 (8)0.0065 (7)0.0027 (7)0.0015 (6)
C90.0220 (8)0.0160 (8)0.0183 (9)0.0026 (7)0.0029 (7)0.0032 (6)
C100.0215 (8)0.0161 (8)0.0217 (9)0.0041 (7)0.0051 (7)0.0027 (6)
C110.0270 (9)0.0309 (10)0.0212 (9)0.0140 (8)0.0094 (8)0.0056 (7)
C120.0431 (12)0.0360 (12)0.0241 (11)0.0091 (10)0.0077 (9)−0.0030 (8)
C130.0361 (11)0.0423 (12)0.0268 (10)0.0185 (10)0.0136 (9)0.0148 (9)
Br1—C41.8996 (17)C5—H50.9300
S1—C11.7533 (17)C6—C71.378 (2)
S1—C111.8380 (18)C6—H60.9300
O1—C71.373 (2)C8—C91.484 (2)
O1—C81.378 (2)C9—C101.504 (2)
O2—C101.308 (2)C9—H9A0.9700
O2—H2O0.74 (3)C9—H9B0.9700
O3—C101.213 (2)C11—C121.515 (3)
C1—C81.354 (2)C11—C131.519 (3)
C1—C21.445 (2)C11—H110.9800
C2—C31.393 (2)C12—H12A0.9600
C2—C71.396 (2)C12—H12B0.9600
C3—C41.382 (2)C12—H12C0.9600
C3—H30.9300C13—H13A0.9600
C4—C51.396 (3)C13—H13B0.9600
C5—C61.383 (3)C13—H13C0.9600
C1—S1—C11103.26 (8)C8—C9—C10114.05 (14)
C7—O1—C8105.80 (12)C8—C9—H9A108.7
C10—O2—H2O108 (2)C10—C9—H9A108.7
C8—C1—C2106.08 (14)C8—C9—H9B108.7
C8—C1—S1125.91 (13)C10—C9—H9B108.7
C2—C1—S1127.62 (13)H9A—C9—H9B107.6
C3—C2—C7119.53 (15)O3—C10—O2124.59 (17)
C3—C2—C1134.93 (15)O3—C10—C9123.37 (16)
C7—C2—C1105.53 (14)O2—C10—C9112.04 (15)
C4—C3—C2116.75 (15)C12—C11—C13112.01 (17)
C4—C3—H3121.6C12—C11—S1112.33 (13)
C2—C3—H3121.6C13—C11—S1111.88 (13)
C3—C4—C5123.14 (16)C12—C11—H11106.7
C3—C4—Br1119.60 (13)C13—C11—H11106.7
C5—C4—Br1117.26 (13)S1—C11—H11106.7
C6—C5—C4120.26 (16)C11—C12—H12A109.5
C6—C5—H5119.9C11—C12—H12B109.5
C4—C5—H5119.9H12A—C12—H12B109.5
C7—C6—C5116.58 (16)C11—C12—H12C109.5
C7—C6—H6121.7H12A—C12—H12C109.5
C5—C6—H6121.7H12B—C12—H12C109.5
O1—C7—C6125.78 (15)C11—C13—H13A109.5
O1—C7—C2110.49 (14)C11—C13—H13B109.5
C6—C7—C2123.73 (16)H13A—C13—H13B109.5
C1—C8—O1112.10 (14)C11—C13—H13C109.5
C1—C8—C9131.51 (16)H13A—C13—H13C109.5
O1—C8—C9116.38 (14)H13B—C13—H13C109.5
C11—S1—C1—C8−95.71 (16)C3—C2—C7—O1−179.98 (14)
C11—S1—C1—C292.46 (16)C1—C2—C7—O10.32 (18)
C8—C1—C2—C3−179.91 (18)C3—C2—C7—C60.6 (3)
S1—C1—C2—C3−6.8 (3)C1—C2—C7—C6−179.08 (16)
C8—C1—C2—C7−0.27 (18)C2—C1—C8—O10.13 (19)
S1—C1—C2—C7172.85 (13)S1—C1—C8—O1−173.14 (12)
C7—C2—C3—C40.0 (2)C2—C1—C8—C9178.91 (17)
C1—C2—C3—C4179.61 (18)S1—C1—C8—C95.6 (3)
C2—C3—C4—C5−0.2 (3)C7—O1—C8—C10.06 (18)
C2—C3—C4—Br1179.88 (12)C7—O1—C8—C9−178.91 (14)
C3—C4—C5—C6−0.2 (3)C1—C8—C9—C10109.0 (2)
Br1—C4—C5—C6179.71 (13)O1—C8—C9—C10−72.23 (19)
C4—C5—C6—C70.8 (3)C8—C9—C10—O38.9 (3)
C8—O1—C7—C6179.14 (17)C8—C9—C10—O2−170.96 (15)
C8—O1—C7—C2−0.24 (17)C1—S1—C11—C1266.06 (16)
C5—C6—C7—O1179.67 (16)C1—S1—C11—C13−60.93 (15)
C5—C6—C7—C2−1.0 (3)
Cg2 is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
O2—H2O···O3i0.74 (3)1.90 (3)2.640 (2)177 (3)
C9—H9B···Cg2ii0.972.72 (1)3.376 (2)126.
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O3i0.74 (3)1.90 (3)2.640 (2)177 (3)
C9—H9BCg2ii0.972.72 (1)3.376 (2)126

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(5-Bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

8.  2-(5-Bromo-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21
  8 in total
  1 in total

1.  2-(5-Fluoro-3-isopropyl-sulfanyl-7-methyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  1 in total

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