Literature DB >> 22589989

Dimethyl 2,6-dimethyl-4-(3-phenyl-1H-pyrazol-4-yl)-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Hoong-Kun Fun, Suhana Arshad, Shridhar Malladi, Kammasandra Nanjunda Shivananda, Arun M Isloor.   

Abstract

In the title compound, C(20)H(21)N(3)O(4), the 1,4-dihydro-pyridine ring adopts a boat conformation. An intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. The pyrazole ring makes dihedral angles of 87.81 (7) and 45.09 (7)° with the mean plane of the 1,4-dihydro-pyridine ring and the phenyl ring, respectively. In the crystal, mol-ecules are linked by N-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22589989      PMCID: PMC3343908          DOI: 10.1107/S1600536812008306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references, see: Fun et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H21N3O4 M = 367.40 Orthorhombic, a = 13.9632 (6) Å b = 10.9908 (5) Å c = 11.8465 (5) Å V = 1818.04 (14) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.38 × 0.22 × 0.14 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.965, T max = 0.987 17004 measured reflections 2788 independent reflections 2687 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.080 S = 1.03 2788 reflections 256 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812008306/hb6648sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008306/hb6648Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812008306/hb6648Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N3O4F(000) = 776
Mr = 367.40Dx = 1.342 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 8800 reflections
a = 13.9632 (6) Åθ = 2.4–30.1°
b = 10.9908 (5) ŵ = 0.10 mm1
c = 11.8465 (5) ÅT = 100 K
V = 1818.04 (14) Å3Block, yellow
Z = 40.38 × 0.22 × 0.14 mm
Bruker SMART APEXII DUO CCD diffractometer2788 independent reflections
Radiation source: fine-focus sealed tube2687 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 30.1°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −19→19
Tmin = 0.965, Tmax = 0.987k = −14→15
17004 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0556P)2 + 0.1941P] where P = (Fo2 + 2Fc2)/3
2788 reflections(Δ/σ)max = 0.001
256 parametersΔρmax = 0.30 e Å3
1 restraintΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.46234 (8)0.61784 (10)0.30293 (11)0.0235 (2)
O20.32205 (8)0.59619 (9)0.39414 (10)0.0205 (2)
O30.15716 (8)1.09597 (9)0.48010 (9)0.0191 (2)
O40.14156 (7)0.90479 (9)0.54372 (10)0.0178 (2)
N10.37507 (9)0.72586 (11)0.77599 (10)0.0156 (2)
N20.42080 (9)0.83459 (11)0.77451 (10)0.0175 (2)
N30.44724 (8)0.99042 (10)0.40046 (10)0.0142 (2)
C10.18445 (9)0.58580 (12)0.61291 (12)0.0156 (2)
H1A0.15510.66020.59140.019*
C20.13659 (10)0.47622 (13)0.59534 (13)0.0181 (3)
H2A0.07510.47640.56110.022*
C30.17821 (10)0.36647 (13)0.62751 (13)0.0186 (3)
H3A0.14540.29190.61520.022*
C40.26818 (10)0.36682 (12)0.67776 (12)0.0184 (3)
H4A0.29660.29220.70040.022*
C50.31710 (10)0.47597 (12)0.69520 (12)0.0154 (2)
H5A0.37860.47530.72950.018*
C60.27552 (9)0.58674 (11)0.66210 (11)0.0130 (2)
C70.32755 (9)0.70190 (11)0.67790 (11)0.0123 (2)
C80.40266 (10)0.87859 (12)0.67155 (12)0.0155 (2)
H8A0.42660.95420.64480.019*
C90.34428 (9)0.80077 (11)0.60694 (11)0.0120 (2)
C100.31482 (9)0.82217 (11)0.48536 (11)0.0114 (2)
H10A0.25720.77140.46840.014*
C110.39518 (9)0.78588 (11)0.40562 (11)0.0122 (2)
C120.46244 (9)0.86881 (12)0.37489 (11)0.0136 (2)
C130.35839 (9)1.03464 (11)0.43207 (11)0.0128 (2)
C140.28952 (9)0.95537 (11)0.46742 (11)0.0126 (2)
C150.39982 (10)0.66120 (12)0.36172 (12)0.0147 (2)
C160.31848 (13)0.47237 (13)0.35474 (17)0.0275 (3)
H16A0.26550.42970.39180.041*
H16B0.37900.43150.37270.041*
H16C0.30850.47170.27290.041*
C170.55479 (10)0.84310 (13)0.31417 (14)0.0191 (3)
H17A0.58580.77190.34800.029*
H17B0.59730.91370.32050.029*
H17C0.54150.82690.23440.029*
C180.35149 (10)1.17080 (12)0.42430 (12)0.0173 (2)
H18A0.29911.19950.47240.026*
H18B0.33901.19440.34590.026*
H18C0.41191.20720.44950.026*
C190.19231 (9)0.99557 (12)0.49572 (11)0.0134 (2)
C200.04439 (10)0.93544 (15)0.57625 (14)0.0215 (3)
H20A0.01140.86210.60270.032*
H20B0.01020.96900.51100.032*
H20C0.04580.99600.63700.032*
H1N30.4908 (15)1.047 (2)0.373 (2)0.025 (5)*
H1N10.3705 (16)0.689 (2)0.838 (2)0.032 (6)*
U11U22U33U12U13U23
O10.0253 (5)0.0200 (5)0.0252 (5)0.0015 (4)0.0071 (4)−0.0072 (4)
O20.0264 (5)0.0108 (4)0.0242 (5)−0.0030 (4)0.0078 (4)−0.0029 (4)
O30.0224 (5)0.0171 (5)0.0176 (5)0.0067 (4)0.0022 (4)0.0028 (4)
O40.0129 (4)0.0163 (4)0.0243 (5)−0.0002 (3)0.0041 (4)−0.0003 (4)
N10.0178 (5)0.0164 (5)0.0126 (5)−0.0043 (4)−0.0023 (4)0.0031 (4)
N20.0193 (5)0.0176 (5)0.0156 (5)−0.0068 (4)−0.0020 (4)0.0010 (4)
N30.0147 (5)0.0125 (5)0.0153 (5)−0.0017 (4)0.0018 (4)0.0008 (4)
C10.0145 (6)0.0155 (6)0.0168 (6)0.0001 (4)−0.0005 (5)0.0018 (5)
C20.0140 (6)0.0207 (6)0.0197 (6)−0.0030 (5)−0.0012 (5)−0.0009 (5)
C30.0208 (7)0.0160 (6)0.0190 (6)−0.0044 (5)0.0025 (5)−0.0021 (5)
C40.0225 (7)0.0125 (5)0.0201 (6)−0.0004 (5)0.0003 (5)0.0019 (5)
C50.0153 (6)0.0150 (5)0.0157 (6)0.0000 (4)−0.0008 (4)0.0022 (5)
C60.0139 (5)0.0129 (5)0.0122 (5)−0.0014 (4)0.0005 (4)0.0009 (4)
C70.0112 (5)0.0128 (5)0.0129 (5)−0.0004 (4)−0.0005 (4)0.0011 (4)
C80.0169 (6)0.0150 (5)0.0146 (6)−0.0045 (4)−0.0009 (5)0.0006 (5)
C90.0127 (5)0.0109 (5)0.0124 (5)−0.0008 (4)0.0007 (4)0.0004 (4)
C100.0127 (5)0.0104 (5)0.0111 (5)0.0011 (4)0.0007 (4)0.0002 (4)
C110.0144 (5)0.0115 (5)0.0107 (5)0.0016 (4)0.0006 (4)−0.0003 (4)
C120.0150 (5)0.0140 (5)0.0120 (5)0.0022 (4)0.0001 (4)0.0008 (4)
C130.0159 (6)0.0118 (5)0.0109 (5)0.0001 (4)−0.0002 (4)0.0005 (4)
C140.0144 (5)0.0114 (5)0.0120 (5)0.0009 (4)0.0003 (4)0.0013 (4)
C150.0182 (6)0.0130 (5)0.0130 (5)0.0010 (4)−0.0002 (5)0.0010 (4)
C160.0344 (9)0.0131 (6)0.0350 (9)−0.0061 (6)0.0101 (7)−0.0078 (6)
C170.0171 (6)0.0190 (6)0.0211 (6)0.0014 (5)0.0059 (5)0.0008 (5)
C180.0214 (6)0.0107 (5)0.0199 (6)−0.0008 (4)0.0021 (5)0.0017 (5)
C190.0149 (5)0.0149 (5)0.0103 (5)0.0004 (4)−0.0001 (4)−0.0009 (4)
C200.0124 (6)0.0252 (7)0.0270 (7)−0.0012 (5)0.0041 (5)−0.0059 (6)
O1—C151.2142 (17)C7—C91.3936 (18)
O2—C151.3555 (17)C8—C91.4078 (18)
O2—C161.4396 (17)C8—H8A0.9500
O3—C191.2219 (16)C9—C101.5163 (18)
O4—C191.3494 (16)C10—C111.5200 (17)
O4—C201.4501 (16)C10—C141.5209 (17)
N1—N21.3551 (16)C10—H10A1.0000
N1—C71.3638 (16)C11—C121.3584 (17)
N1—H1N10.84 (3)C11—C151.4671 (17)
N2—C81.3363 (18)C12—C171.5034 (18)
N3—C131.3840 (17)C13—C141.3635 (17)
N3—C121.3868 (16)C13—C181.5024 (17)
N3—H1N30.93 (2)C14—C191.4663 (18)
C1—C21.3929 (19)C16—H16A0.9800
C1—C61.3989 (18)C16—H16B0.9800
C1—H1A0.9500C16—H16C0.9800
C2—C31.392 (2)C17—H17A0.9800
C2—H2A0.9500C17—H17B0.9800
C3—C41.390 (2)C17—H17C0.9800
C3—H3A0.9500C18—H18A0.9800
C4—C51.3958 (18)C18—H18B0.9800
C4—H4A0.9500C18—H18C0.9800
C5—C61.4045 (17)C20—H20A0.9800
C5—H5A0.9500C20—H20B0.9800
C6—C71.4713 (17)C20—H20C0.9800
C15—O2—C16115.74 (12)C12—C11—C15120.08 (11)
C19—O4—C20115.57 (11)C12—C11—C10120.06 (11)
N2—N1—C7112.86 (11)C15—C11—C10119.87 (11)
N2—N1—H1N1117.8 (16)C11—C12—N3118.84 (11)
C7—N1—H1N1128.1 (16)C11—C12—C17126.52 (12)
C8—N2—N1103.98 (11)N3—C12—C17114.64 (11)
C13—N3—C12122.32 (11)C14—C13—N3119.40 (11)
C13—N3—H1N3116.5 (13)C14—C13—C18127.59 (12)
C12—N3—H1N3117.8 (13)N3—C13—C18112.99 (11)
C2—C1—C6120.31 (12)C13—C14—C19122.05 (11)
C2—C1—H1A119.8C13—C14—C10119.61 (11)
C6—C1—H1A119.8C19—C14—C10118.23 (11)
C3—C2—C1120.53 (13)O1—C15—O2122.11 (12)
C3—C2—H2A119.7O1—C15—C11126.99 (13)
C1—C2—H2A119.7O2—C15—C11110.89 (11)
C4—C3—C2119.47 (13)O2—C16—H16A109.5
C4—C3—H3A120.3O2—C16—H16B109.5
C2—C3—H3A120.3H16A—C16—H16B109.5
C3—C4—C5120.53 (13)O2—C16—H16C109.5
C3—C4—H4A119.7H16A—C16—H16C109.5
C5—C4—H4A119.7H16B—C16—H16C109.5
C4—C5—C6120.09 (13)C12—C17—H17A109.5
C4—C5—H5A120.0C12—C17—H17B109.5
C6—C5—H5A120.0H17A—C17—H17B109.5
C1—C6—C5119.05 (11)C12—C17—H17C109.5
C1—C6—C7120.54 (11)H17A—C17—H17C109.5
C5—C6—C7120.40 (12)H17B—C17—H17C109.5
N1—C7—C9106.37 (11)C13—C18—H18A109.5
N1—C7—C6120.98 (11)C13—C18—H18B109.5
C9—C7—C6132.60 (12)H18A—C18—H18B109.5
N2—C8—C9112.72 (12)C13—C18—H18C109.5
N2—C8—H8A123.6H18A—C18—H18C109.5
C9—C8—H8A123.6H18B—C18—H18C109.5
C7—C9—C8104.06 (12)O3—C19—O4121.37 (12)
C7—C9—C10130.43 (12)O3—C19—C14127.54 (12)
C8—C9—C10125.40 (12)O4—C19—C14111.09 (11)
C9—C10—C11110.45 (10)O4—C20—H20A109.5
C9—C10—C14110.18 (10)O4—C20—H20B109.5
C11—C10—C14109.71 (10)H20A—C20—H20B109.5
C9—C10—H10A108.8O4—C20—H20C109.5
C11—C10—H10A108.8H20A—C20—H20C109.5
C14—C10—H10A108.8H20B—C20—H20C109.5
C7—N1—N2—C8−1.15 (16)C14—C10—C11—C15−147.94 (11)
C6—C1—C2—C30.7 (2)C15—C11—C12—N3168.44 (12)
C1—C2—C3—C40.1 (2)C10—C11—C12—N3−11.42 (18)
C2—C3—C4—C5−0.5 (2)C15—C11—C12—C17−11.6 (2)
C3—C4—C5—C60.1 (2)C10—C11—C12—C17168.57 (13)
C2—C1—C6—C5−1.1 (2)C13—N3—C12—C11−15.16 (19)
C2—C1—C6—C7178.25 (13)C13—N3—C12—C17164.85 (12)
C4—C5—C6—C10.7 (2)C12—N3—C13—C1417.20 (19)
C4—C5—C6—C7−178.63 (13)C12—N3—C13—C18−163.94 (12)
N2—N1—C7—C90.79 (15)N3—C13—C14—C19−176.37 (12)
N2—N1—C7—C6178.43 (12)C18—C13—C14—C195.0 (2)
C1—C6—C7—N1136.67 (13)N3—C13—C14—C107.47 (18)
C5—C6—C7—N1−43.99 (18)C18—C13—C14—C10−171.21 (13)
C1—C6—C7—C9−46.4 (2)C9—C10—C14—C1392.04 (14)
C5—C6—C7—C9132.93 (16)C11—C10—C14—C13−29.76 (16)
N1—N2—C8—C91.08 (16)C9—C10—C14—C19−84.27 (14)
N1—C7—C9—C8−0.10 (14)C11—C10—C14—C19153.92 (11)
C6—C7—C9—C8−177.35 (13)C16—O2—C15—O10.2 (2)
N1—C7—C9—C10176.07 (12)C16—O2—C15—C11179.37 (13)
C6—C7—C9—C10−1.2 (2)C12—C11—C15—O14.6 (2)
N2—C8—C9—C7−0.63 (16)C10—C11—C15—O1−175.57 (14)
N2—C8—C9—C10−177.05 (12)C12—C11—C15—O2−174.55 (12)
C7—C9—C10—C11−95.43 (16)C10—C11—C15—O25.31 (17)
C8—C9—C10—C1180.01 (15)C20—O4—C19—O3−0.85 (19)
C7—C9—C10—C14143.21 (14)C20—O4—C19—C14179.34 (11)
C8—C9—C10—C14−41.35 (16)C13—C14—C19—O39.1 (2)
C9—C10—C11—C12−89.73 (14)C10—C14—C19—O3−174.67 (13)
C14—C10—C11—C1231.92 (16)C13—C14—C19—O4−171.09 (12)
C9—C10—C11—C1590.41 (14)C10—C14—C19—O45.13 (16)
D—H···AD—HH···AD···AD—H···A
C18—H18A···O30.982.292.9114 (18)121
N3—H1N3···N2i0.93 (2)2.14 (2)3.0529 (17)167 (2)
N1—H1N1···O3ii0.84 (3)2.01 (3)2.8438 (16)173 (2)
C5—H5A···O1iii0.952.603.4895 (18)157
C20—H20C···O1iv0.982.383.3524 (19)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18A⋯O30.982.292.9114 (18)121
N3—H1N3⋯N2i0.93 (2)2.14 (2)3.0529 (17)167 (2)
N1—H1N1⋯O3ii0.84 (3)2.01 (3)2.8438 (16)173 (2)
C5—H5A⋯O1iii0.952.603.4895 (18)157
C20—H20C⋯O1iv0.982.383.3524 (19)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diethyl 4-[2-(4-meth-oxy-phen-yl)-1H-pyrazol-3-yl]-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; A M Vijesh; A M Isloor; Shridhar Malladi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14

3.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Diethyl 4-[5-(4-chloro-phen-yl)-1H-pyrazol-4-yl]-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

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