Literature DB >> 22590200

Diethyl 4-[5-(4-chloro-phen-yl)-1H-pyrazol-4-yl]-2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Hoong-Kun Fun, Wan-Sin Loh, A M Vijesh, Arun M Isloor, Shridhar Malladi.   

Abstract

In the title compound, C(22)H(24)ClN(3)O(4), intra-molecular C-H⋯O and C-H⋯N hydrogen bonds form S(9) and S(7) ring motifs, respectively. The 1,4-dihydro-pyridine ring adopts a flattened boat conformation. The benzene ring makes a dihedral angle of 33.36 (6)° with the pyrazole ring. In the crystal, pairs of N-H⋯N hydrogen bonds link the mol-ecules into inversion dimers. The dimers are stacked in column along the a axis through N-H⋯O and C-H⋯N hydrogen bonds. The crystal packing also features C-H⋯π inter-actions involving the pyrazole ring.

Entities:  

Year:  2012        PMID: 22590200      PMCID: PMC3344438          DOI: 10.1107/S160053681201344X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of 1,4-dihydro­pyridines, see: Janis & Triggle (1983 ▶); Boecker & Guengerich (1986 ▶); Gordeev et al. (1996 ▶); Buhler & Kiowski (1987 ▶); Vo et al. (1995 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For a related structure, see: Fun et al. (2012 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H24ClN3O4 M = 429.89 Triclinic, a = 8.5210 (5) Å b = 10.7809 (6) Å c = 11.2707 (7) Å α = 90.411 (1)° β = 97.205 (1)° γ = 94.210 (1)° V = 1024.28 (10) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 100 K 0.38 × 0.18 × 0.17 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.921, T max = 0.964 17114 measured reflections 5885 independent reflections 5038 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.04 5885 reflections 283 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201344X/is5103sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201344X/is5103Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201344X/is5103Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H24ClN3O4Z = 2
Mr = 429.89F(000) = 452
Triclinic, P1Dx = 1.394 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5210 (5) ÅCell parameters from 7118 reflections
b = 10.7809 (6) Åθ = 2.4–32.6°
c = 11.2707 (7) ŵ = 0.22 mm1
α = 90.411 (1)°T = 100 K
β = 97.205 (1)°Block, colourless
γ = 94.210 (1)°0.38 × 0.18 × 0.17 mm
V = 1024.28 (10) Å3
Bruker SMART APEXII DUO CCD area-detector diffractometer5885 independent reflections
Radiation source: fine-focus sealed tube5038 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 30.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.921, Tmax = 0.964k = −15→15
17114 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0519P)2 + 0.4397P] where P = (Fo2 + 2Fc2)/3
5885 reflections(Δ/σ)max = 0.001
283 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.40990 (4)0.46308 (3)0.70565 (3)0.02708 (9)
O1−0.04200 (12)0.49719 (9)0.17848 (9)0.0248 (2)
O2−0.23718 (10)0.49196 (8)0.02494 (8)0.01812 (18)
O3−0.12624 (10)0.84126 (8)0.44891 (7)0.01690 (17)
O4−0.34579 (10)0.94038 (8)0.39174 (8)0.01770 (17)
N10.32527 (12)0.89803 (9)0.27948 (9)0.01440 (19)
N20.26859 (12)0.96583 (10)0.18490 (9)0.01621 (19)
N3−0.24741 (11)0.87179 (9)0.03539 (9)0.01423 (19)
C10.36646 (14)0.76773 (12)0.50778 (10)0.0169 (2)
H1A0.40780.85010.51200.020*
C20.41253 (14)0.68690 (12)0.59919 (11)0.0197 (2)
H2A0.48500.71490.66420.024*
C30.34984 (14)0.56477 (12)0.59271 (11)0.0192 (2)
C40.24000 (15)0.52106 (12)0.49769 (12)0.0213 (2)
H4A0.19670.43920.49550.026*
C50.19539 (14)0.60170 (12)0.40547 (11)0.0184 (2)
H5A0.12320.57290.34060.022*
C60.25797 (13)0.72537 (11)0.40942 (10)0.0139 (2)
C70.21629 (13)0.80907 (10)0.31024 (10)0.0126 (2)
C80.11965 (13)0.91862 (11)0.15670 (10)0.0156 (2)
H8A0.05010.94770.09470.019*
C90.07844 (13)0.81976 (10)0.23091 (10)0.0127 (2)
C10−0.08660 (12)0.75561 (10)0.22759 (9)0.0122 (2)
H10A−0.08650.69630.29310.015*
C11−0.20389 (13)0.85225 (10)0.24478 (10)0.0127 (2)
C12−0.26584 (12)0.91545 (10)0.14796 (10)0.0129 (2)
C13−0.21330 (13)0.74984 (11)0.01598 (10)0.0144 (2)
C14−0.14542 (13)0.68669 (10)0.11005 (10)0.0132 (2)
C15−0.13184 (13)0.55150 (11)0.10873 (10)0.0156 (2)
C16−0.24515 (15)0.35748 (11)0.02645 (11)0.0192 (2)
H16A−0.26690.32730.10410.023*
H16B−0.14590.32730.00900.023*
C17−0.37844 (15)0.31492 (12)−0.06902 (12)0.0209 (2)
H17A−0.39320.2258−0.06970.031*
H17B−0.35280.3425−0.14560.031*
H17C−0.47430.3494−0.05260.031*
C18−0.23545 (13)0.88366 (10)0.36557 (10)0.0138 (2)
C19−0.14246 (15)0.86913 (13)0.57282 (10)0.0204 (2)
H19A−0.24270.83220.59320.024*
H19B−0.13860.95830.58620.024*
C20−0.00580 (16)0.81475 (14)0.64767 (11)0.0240 (3)
H20A−0.00820.83520.73040.036*
H20B0.09240.84840.62330.036*
H20C−0.01450.72600.63700.036*
C21−0.25953 (15)0.70438 (12)−0.11096 (10)0.0185 (2)
H21A−0.18510.6476−0.13150.028*
H21B−0.25920.7739−0.16370.028*
H21C−0.36380.6626−0.11870.028*
C22−0.34816 (14)1.03355 (11)0.14701 (11)0.0170 (2)
H22A−0.32851.07220.22500.026*
H22B−0.46021.01520.12600.026*
H22C−0.30861.08890.08950.026*
H1N10.424 (2)0.9115 (16)0.3055 (16)0.024 (4)*
H1N3−0.283 (2)0.9163 (17)−0.0293 (17)0.028 (4)*
U11U22U33U12U13U23
Cl10.02373 (16)0.03297 (19)0.02383 (16)0.00309 (12)−0.00125 (11)0.01615 (13)
O10.0259 (5)0.0178 (4)0.0280 (5)0.0062 (4)−0.0099 (4)−0.0029 (4)
O20.0228 (4)0.0133 (4)0.0165 (4)−0.0005 (3)−0.0031 (3)−0.0010 (3)
O30.0169 (4)0.0239 (4)0.0101 (4)0.0046 (3)0.0008 (3)−0.0005 (3)
O40.0135 (4)0.0216 (4)0.0182 (4)0.0023 (3)0.0025 (3)−0.0019 (3)
N10.0114 (4)0.0169 (5)0.0144 (4)0.0002 (3)−0.0002 (3)0.0025 (3)
N20.0139 (4)0.0187 (5)0.0157 (4)0.0008 (4)0.0009 (3)0.0051 (4)
N30.0151 (4)0.0149 (5)0.0123 (4)0.0010 (3)0.0002 (3)0.0033 (3)
C10.0162 (5)0.0192 (5)0.0146 (5)0.0001 (4)0.0001 (4)0.0015 (4)
C20.0170 (5)0.0265 (6)0.0145 (5)−0.0001 (4)−0.0020 (4)0.0033 (4)
C30.0170 (5)0.0244 (6)0.0164 (5)0.0043 (4)0.0013 (4)0.0089 (4)
C40.0204 (6)0.0190 (6)0.0230 (6)−0.0005 (4)−0.0023 (4)0.0058 (5)
C50.0182 (5)0.0178 (5)0.0179 (5)0.0009 (4)−0.0026 (4)0.0023 (4)
C60.0129 (5)0.0173 (5)0.0117 (5)0.0029 (4)0.0014 (4)0.0019 (4)
C70.0120 (5)0.0138 (5)0.0120 (5)0.0012 (4)0.0009 (4)0.0006 (4)
C80.0132 (5)0.0183 (5)0.0148 (5)0.0010 (4)0.0002 (4)0.0038 (4)
C90.0125 (5)0.0138 (5)0.0116 (5)0.0016 (4)0.0006 (4)0.0006 (4)
C100.0119 (4)0.0132 (5)0.0112 (4)0.0006 (4)0.0004 (3)0.0008 (4)
C110.0111 (4)0.0138 (5)0.0130 (5)−0.0003 (4)0.0011 (4)0.0000 (4)
C120.0100 (4)0.0137 (5)0.0146 (5)−0.0007 (4)0.0007 (4)0.0009 (4)
C130.0136 (5)0.0159 (5)0.0132 (5)−0.0007 (4)0.0010 (4)0.0002 (4)
C140.0127 (5)0.0139 (5)0.0127 (5)0.0000 (4)0.0008 (4)−0.0006 (4)
C150.0147 (5)0.0165 (5)0.0154 (5)0.0007 (4)0.0014 (4)−0.0020 (4)
C160.0239 (6)0.0130 (5)0.0197 (5)0.0011 (4)−0.0017 (4)−0.0010 (4)
C170.0238 (6)0.0172 (6)0.0205 (6)0.0001 (4)−0.0015 (4)−0.0022 (4)
C180.0125 (5)0.0144 (5)0.0137 (5)−0.0016 (4)0.0005 (4)0.0003 (4)
C190.0195 (5)0.0311 (7)0.0110 (5)0.0035 (5)0.0025 (4)−0.0025 (4)
C200.0230 (6)0.0344 (7)0.0138 (5)0.0035 (5)−0.0013 (4)−0.0006 (5)
C210.0226 (6)0.0200 (6)0.0121 (5)0.0006 (4)−0.0001 (4)0.0009 (4)
C220.0161 (5)0.0163 (5)0.0187 (5)0.0035 (4)0.0009 (4)0.0033 (4)
Cl1—C31.7387 (12)C9—C101.5169 (15)
O1—C151.2117 (14)C10—C111.5233 (15)
O2—C151.3430 (14)C10—C141.5241 (15)
O2—C161.4467 (14)C10—H10A0.9800
O3—C181.3440 (13)C11—C121.3611 (15)
O3—C191.4519 (14)C11—C181.4625 (15)
O4—C181.2233 (14)C12—C221.4977 (16)
N1—N21.3556 (13)C13—C141.3552 (15)
N1—C71.3628 (15)C13—C211.5042 (16)
N1—H1N10.859 (18)C14—C151.4707 (16)
N2—C81.3313 (15)C16—C171.5060 (17)
N3—C121.3814 (15)C16—H16A0.9700
N3—C131.3888 (15)C16—H16B0.9700
N3—H1N30.909 (19)C17—H17A0.9600
C1—C21.3915 (16)C17—H17B0.9600
C1—C61.4021 (15)C17—H17C0.9600
C1—H1A0.9300C19—C201.5075 (18)
C2—C31.3819 (19)C19—H19A0.9700
C2—H2A0.9300C19—H19B0.9700
C3—C41.3862 (17)C20—H20A0.9600
C4—C51.3940 (16)C20—H20B0.9600
C4—H4A0.9300C20—H20C0.9600
C5—C61.3974 (17)C21—H21A0.9600
C5—H5A0.9300C21—H21B0.9600
C6—C71.4670 (15)C21—H21C0.9600
C7—C91.3965 (14)C22—H22A0.9600
C8—C91.4108 (16)C22—H22B0.9600
C8—H8A0.9300C22—H22C0.9600
C15—O2—C16116.30 (9)C14—C13—N3118.15 (10)
C18—O3—C19116.69 (9)C14—C13—C21128.07 (11)
N2—N1—C7112.89 (9)N3—C13—C21113.78 (10)
N2—N1—H1N1116.7 (12)C13—C14—C15123.77 (10)
C7—N1—H1N1130.0 (12)C13—C14—C10119.60 (10)
C8—N2—N1104.07 (9)C15—C14—C10116.55 (9)
C12—N3—C13121.59 (9)O1—C15—O2122.63 (11)
C12—N3—H1N3118.7 (11)O1—C15—C14124.73 (11)
C13—N3—H1N3117.8 (11)O2—C15—C14112.54 (10)
C2—C1—C6120.24 (11)O2—C16—C17105.52 (10)
C2—C1—H1A119.9O2—C16—H16A110.6
C6—C1—H1A119.9C17—C16—H16A110.6
C3—C2—C1119.54 (11)O2—C16—H16B110.6
C3—C2—H2A120.2C17—C16—H16B110.6
C1—C2—H2A120.2H16A—C16—H16B108.8
C2—C3—C4121.43 (11)C16—C17—H17A109.5
C2—C3—Cl1119.55 (9)C16—C17—H17B109.5
C4—C3—Cl1119.01 (10)H17A—C17—H17B109.5
C3—C4—C5118.96 (12)C16—C17—H17C109.5
C3—C4—H4A120.5H17A—C17—H17C109.5
C5—C4—H4A120.5H17B—C17—H17C109.5
C4—C5—C6120.71 (11)O4—C18—O3122.26 (10)
C4—C5—H5A119.6O4—C18—C11126.36 (10)
C6—C5—H5A119.6O3—C18—C11111.38 (9)
C5—C6—C1119.10 (10)O3—C19—C20106.57 (10)
C5—C6—C7120.83 (10)O3—C19—H19A110.4
C1—C6—C7120.03 (10)C20—C19—H19A110.4
N1—C7—C9106.36 (9)O3—C19—H19B110.4
N1—C7—C6120.39 (10)C20—C19—H19B110.4
C9—C7—C6133.25 (10)H19A—C19—H19B108.6
N2—C8—C9112.86 (10)C19—C20—H20A109.5
N2—C8—H8A123.6C19—C20—H20B109.5
C9—C8—H8A123.6H20A—C20—H20B109.5
C7—C9—C8103.82 (10)C19—C20—H20C109.5
C7—C9—C10131.02 (10)H20A—C20—H20C109.5
C8—C9—C10124.80 (10)H20B—C20—H20C109.5
C9—C10—C11109.34 (9)C13—C21—H21A109.5
C9—C10—C14113.54 (9)C13—C21—H21B109.5
C11—C10—C14107.27 (8)H21A—C21—H21B109.5
C9—C10—H10A108.9C13—C21—H21C109.5
C11—C10—H10A108.9H21A—C21—H21C109.5
C14—C10—H10A108.9H21B—C21—H21C109.5
C12—C11—C18121.40 (10)C12—C22—H22A109.5
C12—C11—C10118.82 (10)C12—C22—H22B109.5
C18—C11—C10119.51 (9)H22A—C22—H22B109.5
C11—C12—N3118.42 (10)C12—C22—H22C109.5
C11—C12—C22127.72 (10)H22A—C22—H22C109.5
N3—C12—C22113.79 (9)H22B—C22—H22C109.5
C7—N1—N2—C80.62 (13)C14—C10—C11—C18146.53 (10)
C6—C1—C2—C3−0.41 (19)C18—C11—C12—N3−172.34 (10)
C1—C2—C3—C4−0.9 (2)C10—C11—C12—N313.70 (15)
C1—C2—C3—Cl1178.92 (10)C18—C11—C12—C2210.73 (18)
C2—C3—C4—C51.7 (2)C10—C11—C12—C22−163.24 (11)
Cl1—C3—C4—C5−178.15 (10)C13—N3—C12—C1119.94 (16)
C3—C4—C5—C6−1.14 (19)C13—N3—C12—C22−162.71 (10)
C4—C5—C6—C1−0.12 (18)C12—N3—C13—C14−22.38 (16)
C4—C5—C6—C7177.48 (11)C12—N3—C13—C21157.22 (10)
C2—C1—C6—C50.91 (18)N3—C13—C14—C15167.42 (10)
C2—C1—C6—C7−176.72 (11)C21—C13—C14—C15−12.11 (19)
N2—N1—C7—C9−0.39 (13)N3—C13—C14—C10−9.08 (16)
N2—N1—C7—C6178.92 (10)C21—C13—C14—C10171.38 (11)
C5—C6—C7—N1−145.13 (11)C9—C10—C14—C13−83.80 (13)
C1—C6—C7—N132.45 (16)C11—C10—C14—C1337.11 (14)
C5—C6—C7—C933.95 (19)C9—C10—C14—C1599.45 (12)
C1—C6—C7—C9−148.47 (13)C11—C10—C14—C15−139.64 (10)
N1—N2—C8—C9−0.62 (13)C16—O2—C15—O13.64 (18)
N1—C7—C9—C80.00 (12)C16—O2—C15—C14−172.93 (10)
C6—C7—C9—C8−179.18 (12)C13—C14—C15—O1162.09 (13)
N1—C7—C9—C10−173.26 (11)C10—C14—C15—O1−21.31 (17)
C6—C7—C9—C107.6 (2)C13—C14—C15—O2−21.42 (16)
N2—C8—C9—C70.40 (13)C10—C14—C15—O2155.18 (10)
N2—C8—C9—C10174.21 (10)C15—O2—C16—C17176.01 (10)
C7—C9—C10—C11116.66 (13)C19—O3—C18—O4−1.74 (17)
C8—C9—C10—C11−55.36 (14)C19—O3—C18—C11178.61 (10)
C7—C9—C10—C14−123.60 (12)C12—C11—C18—O420.74 (18)
C8—C9—C10—C1464.38 (14)C10—C11—C18—O4−165.33 (11)
C9—C10—C11—C1284.14 (12)C12—C11—C18—O3−159.62 (10)
C14—C10—C11—C12−39.39 (13)C10—C11—C18—O314.30 (14)
C9—C10—C11—C18−89.94 (12)C18—O3—C19—C20−178.84 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O4i0.857 (17)2.078 (17)2.9291 (14)172.2 (17)
N3—H1N3···N2ii0.908 (19)2.184 (19)3.0427 (14)157.5 (15)
C5—H5A···O10.932.273.1988 (16)177
C8—H8A···N30.932.613.2546 (15)127
C22—H22B···N2iii0.962.503.3741 (16)151
C19—H19B···Cg1iv0.962.793.5562 (14)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/N2/C7–C9 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O4i0.857 (17)2.078 (17)2.9291 (14)172.2 (17)
N3—H1N3⋯N2ii0.908 (19)2.184 (19)3.0427 (14)157.5 (15)
C5—H5A⋯O10.932.273.1988 (16)177
C8—H8A⋯N30.932.613.2546 (15)127
C22—H22B⋯N2iii0.962.503.3741 (16)151
C19—H19BCg1iv0.962.793.5562 (14)137

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  New developments in Ca2+ channel antagonists.

Authors:  R A Janis; D J Triggle
Journal:  J Med Chem       Date:  1983-06       Impact factor: 7.446

Review 3.  Calcium antagonists in hypertension.

Authors:  F R Bühler; W Kiowski
Journal:  J Hypertens Suppl       Date:  1987-08

4.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

5.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

6.  Dimethyl 2,6-dimethyl-4-(3-phenyl-1H-pyrazol-4-yl)-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Authors:  Hoong-Kun Fun; Suhana Arshad; Shridhar Malladi; Kammasandra Nanjunda Shivananda; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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