Literature DB >> 22589963

(2-Oxo-2H-benzo[h]chromen-4-yl)methyl morpholine-4-carbodithio-ate.

Rajni Kant, Vivek K Gupta, Kamini Kapoor, Gurvinder Kour, K Mahesh Kumar, N M Mahabaleshwaraiah, O Kotresh.   

Abstract

In the title compound, C(19)H(17)NO(3)S(2), the morpholine ring is in a chair conformation. In the coumarin ring system, the dihedral angle between the benzene and pyran rings is 3.9 (1)°. In the crystal, weak C-H⋯O inter-actions link the mol-ecules into corrugated layers parallel to (102). The crystal packing also exhibits π-π inter-actions, with distances of 3.644 (1) and 3.677 (1) Å between the centroids of the benzene rings of neighbouring mol-ecules.

Entities:  

Year:  2012        PMID: 22589963      PMCID: PMC3344054          DOI: 10.1107/S160053681201094X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of coumarins, see: Kontogiorgis & Hadjipavlou-Litina (2004 ▶). For a related structure, see: Kumar et al. (2012 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H17NO3S2 M = 371.46 Monoclinic, a = 13.0928 (4) Å b = 11.6978 (3) Å c = 11.3673 (3) Å β = 99.232 (3)° V = 1718.43 (8) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 293 K 0.3 × 0.2 × 0.1 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.818, T max = 1.000 18655 measured reflections 3017 independent reflections 2457 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.104 S = 1.05 3017 reflections 226 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201094X/cv5260sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201094X/cv5260Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201094X/cv5260Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17NO3S2F(000) = 776
Mr = 371.46Dx = 1.436 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9000 reflections
a = 13.0928 (4) Åθ = 3.5–29.0°
b = 11.6978 (3) ŵ = 0.33 mm1
c = 11.3673 (3) ÅT = 293 K
β = 99.232 (3)°Plate shaped, light yellow
V = 1718.43 (8) Å30.3 × 0.2 × 0.1 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer3017 independent reflections
Radiation source: fine-focus sealed tube2457 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 16.1049 pixels mm-1θmax = 25.0°, θmin = 3.5°
ω scansh = −15→15
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −13→13
Tmin = 0.818, Tmax = 1.000l = −13→13
18655 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0471P)2 + 0.803P] where P = (Fo2 + 2Fc2)/3
3017 reflections(Δ/σ)max = 0.001
226 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27-08-2010 CrysAlis171 .NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.85592 (4)0.20784 (5)0.78872 (5)0.04418 (18)
S20.82222 (5)0.40595 (6)0.61667 (6)0.0577 (2)
O10.74719 (10)0.50873 (12)1.10256 (12)0.0393 (3)
O20.90505 (12)0.56115 (14)1.08171 (15)0.0528 (4)
O31.20360 (13)0.26933 (17)0.65798 (18)0.0683 (5)
N10.98691 (14)0.26938 (16)0.65122 (16)0.0461 (5)
C10.74297 (15)0.35148 (17)0.91788 (17)0.0359 (5)
C20.82708 (16)0.41668 (18)0.95188 (18)0.0399 (5)
H20.88380.40790.91280.048*
C30.83295 (16)0.49940 (18)1.04603 (19)0.0392 (5)
C40.66310 (15)0.43868 (17)1.07426 (18)0.0342 (4)
C50.58582 (15)0.45029 (18)1.14826 (18)0.0375 (5)
C60.59575 (18)0.5245 (2)1.2473 (2)0.0478 (6)
H60.65390.57081.26540.057*
C70.5195 (2)0.5279 (2)1.3166 (2)0.0594 (7)
H70.52700.57581.38280.071*
C80.4307 (2)0.4611 (2)1.2901 (2)0.0594 (7)
H80.37950.46541.33790.071*
C90.41879 (17)0.3897 (2)1.1947 (2)0.0523 (6)
H90.35920.34561.17760.063*
C100.49592 (15)0.38159 (18)1.12088 (19)0.0405 (5)
C110.48607 (16)0.30730 (19)1.0208 (2)0.0460 (5)
H110.42570.26501.00020.055*
C120.56292 (16)0.29700 (19)0.9549 (2)0.0426 (5)
H120.55490.24630.89100.051*
C130.65541 (15)0.36174 (17)0.98100 (18)0.0346 (4)
C140.73585 (16)0.2666 (2)0.8168 (2)0.0455 (5)
H14A0.70220.30370.74450.055*
H14B0.69160.20400.83340.055*
C150.89538 (16)0.29882 (18)0.67899 (18)0.0389 (5)
C161.03585 (19)0.3310 (3)0.5620 (2)0.0592 (7)
H16A0.99530.39810.53490.071*
H16B1.03860.28200.49370.071*
C171.1420 (2)0.3656 (3)0.6158 (3)0.0657 (7)
H17A1.17430.40580.55680.079*
H17B1.13850.41750.68150.079*
C181.15784 (19)0.2117 (2)0.7477 (2)0.0595 (7)
H18A1.15550.26320.81420.071*
H18B1.20040.14660.77700.071*
C191.05149 (17)0.1718 (2)0.7007 (2)0.0521 (6)
H19A1.05400.11520.63890.063*
H19B1.02130.13640.76420.063*
U11U22U33U12U13U23
S10.0474 (3)0.0374 (3)0.0509 (3)0.0035 (2)0.0176 (3)−0.0012 (2)
S20.0595 (4)0.0539 (4)0.0601 (4)0.0195 (3)0.0114 (3)0.0097 (3)
O10.0370 (8)0.0371 (8)0.0459 (8)−0.0050 (6)0.0130 (6)−0.0069 (6)
O20.0448 (9)0.0505 (10)0.0661 (11)−0.0162 (8)0.0178 (8)−0.0156 (8)
O30.0451 (10)0.0716 (13)0.0908 (13)0.0030 (9)0.0190 (9)0.0225 (11)
N10.0415 (10)0.0494 (11)0.0487 (11)0.0067 (9)0.0109 (8)0.0093 (9)
C10.0365 (11)0.0320 (11)0.0400 (11)0.0015 (9)0.0087 (9)−0.0001 (9)
C20.0394 (12)0.0378 (12)0.0455 (12)−0.0019 (10)0.0159 (9)−0.0023 (9)
C30.0372 (11)0.0357 (11)0.0466 (12)−0.0024 (10)0.0124 (9)0.0001 (9)
C40.0310 (10)0.0299 (10)0.0423 (11)0.0002 (8)0.0074 (9)0.0047 (9)
C50.0363 (11)0.0339 (11)0.0434 (11)0.0075 (9)0.0101 (9)0.0071 (9)
C60.0471 (13)0.0464 (13)0.0523 (13)0.0020 (11)0.0157 (11)−0.0034 (11)
C70.0645 (17)0.0640 (17)0.0547 (15)0.0105 (14)0.0241 (12)−0.0039 (12)
C80.0524 (15)0.0662 (17)0.0668 (17)0.0141 (13)0.0317 (13)0.0105 (14)
C90.0368 (12)0.0556 (15)0.0679 (16)0.0036 (11)0.0184 (11)0.0114 (13)
C100.0320 (11)0.0395 (12)0.0513 (13)0.0073 (9)0.0104 (9)0.0111 (10)
C110.0314 (11)0.0433 (13)0.0631 (15)−0.0039 (10)0.0066 (10)0.0032 (11)
C120.0373 (11)0.0397 (12)0.0505 (12)−0.0032 (10)0.0059 (9)−0.0035 (10)
C130.0313 (10)0.0315 (10)0.0412 (11)0.0013 (9)0.0062 (8)0.0034 (9)
C140.0392 (12)0.0473 (13)0.0521 (13)−0.0058 (10)0.0142 (10)−0.0126 (10)
C150.0411 (12)0.0394 (12)0.0365 (11)0.0011 (9)0.0076 (9)−0.0043 (9)
C160.0541 (15)0.0763 (18)0.0482 (14)0.0025 (13)0.0117 (11)0.0168 (13)
C170.0595 (16)0.0668 (18)0.0714 (17)−0.0074 (14)0.0129 (13)0.0187 (14)
C180.0513 (15)0.0550 (16)0.0717 (16)0.0093 (12)0.0079 (12)0.0117 (13)
C190.0487 (14)0.0452 (14)0.0657 (15)0.0080 (11)0.0193 (12)0.0051 (11)
S1—C151.778 (2)C7—H70.9300
S1—C141.791 (2)C8—C91.358 (4)
S2—C151.665 (2)C8—H80.9300
O1—C41.369 (2)C9—C101.416 (3)
O1—C31.385 (2)C9—H90.9300
O2—C31.206 (2)C10—C111.421 (3)
O3—C171.422 (3)C11—C121.353 (3)
O3—C181.432 (3)C11—H110.9300
N1—C151.333 (3)C12—C131.419 (3)
N1—C161.472 (3)C12—H120.9300
N1—C191.477 (3)C14—H14A0.9700
C1—C21.344 (3)C14—H14B0.9700
C1—C131.452 (3)C16—C171.482 (3)
C1—C141.511 (3)C16—H16A0.9700
C2—C31.436 (3)C16—H16B0.9700
C2—H20.9300C17—H17A0.9700
C4—C131.382 (3)C17—H17B0.9700
C4—C51.422 (3)C18—C191.484 (3)
C5—C61.411 (3)C18—H18A0.9700
C5—C101.418 (3)C18—H18B0.9700
C6—C71.369 (3)C19—H19A0.9700
C6—H60.9300C19—H19B0.9700
C7—C81.392 (4)
C15—S1—C14104.92 (11)C11—C12—C13121.5 (2)
C4—O1—C3121.69 (16)C11—C12—H12119.3
C17—O3—C18109.50 (18)C13—C12—H12119.3
C15—N1—C16122.97 (19)C4—C13—C12117.56 (18)
C15—N1—C19126.25 (18)C4—C13—C1117.83 (18)
C16—N1—C19110.76 (18)C12—C13—C1124.60 (19)
C2—C1—C13119.11 (19)C1—C14—S1116.03 (15)
C2—C1—C14122.65 (18)C1—C14—H14A108.3
C13—C1—C14118.24 (18)S1—C14—H14A108.3
C1—C2—C3122.69 (19)C1—C14—H14B108.3
C1—C2—H2118.7S1—C14—H14B108.3
C3—C2—H2118.7H14A—C14—H14B107.4
O2—C3—O1116.48 (19)N1—C15—S2124.86 (16)
O2—C3—C2126.85 (19)N1—C15—S1112.65 (15)
O1—C3—C2116.66 (18)S2—C15—S1122.47 (12)
O1—C4—C13121.80 (17)N1—C16—C17109.4 (2)
O1—C4—C5115.18 (18)N1—C16—H16A109.8
C13—C4—C5123.01 (19)C17—C16—H16A109.8
C6—C5—C10119.38 (19)N1—C16—H16B109.8
C6—C5—C4123.2 (2)C17—C16—H16B109.8
C10—C5—C4117.41 (19)H16A—C16—H16B108.2
C7—C6—C5119.7 (2)O3—C17—C16111.5 (2)
C7—C6—H6120.2O3—C17—H17A109.3
C5—C6—H6120.2C16—C17—H17A109.3
C6—C7—C8121.3 (2)O3—C17—H17B109.3
C6—C7—H7119.4C16—C17—H17B109.3
C8—C7—H7119.4H17A—C17—H17B108.0
C9—C8—C7120.2 (2)O3—C18—C19111.5 (2)
C9—C8—H8119.9O3—C18—H18A109.3
C7—C8—H8119.9C19—C18—H18A109.3
C8—C9—C10120.8 (2)O3—C18—H18B109.3
C8—C9—H9119.6C19—C18—H18B109.3
C10—C9—H9119.6H18A—C18—H18B108.0
C9—C10—C5118.6 (2)N1—C19—C18110.0 (2)
C9—C10—C11122.2 (2)N1—C19—H19A109.7
C5—C10—C11119.20 (19)C18—C19—H19A109.7
C12—C11—C10121.2 (2)N1—C19—H19B109.7
C12—C11—H11119.4C18—C19—H19B109.7
C10—C11—H11119.4H19A—C19—H19B108.2
C13—C1—C2—C3−2.1 (3)C5—C4—C13—C123.8 (3)
C14—C1—C2—C3178.4 (2)O1—C4—C13—C14.1 (3)
C4—O1—C3—O2−176.30 (18)C5—C4—C13—C1−175.22 (18)
C4—O1—C3—C23.2 (3)C11—C12—C13—C4−2.0 (3)
C1—C2—C3—O2−179.9 (2)C11—C12—C13—C1177.0 (2)
C1—C2—C3—O10.7 (3)C2—C1—C13—C4−0.2 (3)
C3—O1—C4—C13−5.7 (3)C14—C1—C13—C4179.26 (19)
C3—O1—C4—C5173.65 (17)C2—C1—C13—C12−179.2 (2)
O1—C4—C5—C6−2.7 (3)C14—C1—C13—C120.3 (3)
C13—C4—C5—C6176.6 (2)C2—C1—C14—S127.7 (3)
O1—C4—C5—C10178.51 (17)C13—C1—C14—S1−151.80 (16)
C13—C4—C5—C10−2.2 (3)C15—S1—C14—C1−92.49 (18)
C10—C5—C6—C71.0 (3)C16—N1—C15—S21.3 (3)
C4—C5—C6—C7−177.8 (2)C19—N1—C15—S2−177.02 (18)
C5—C6—C7—C8−1.3 (4)C16—N1—C15—S1179.49 (18)
C6—C7—C8—C90.7 (4)C19—N1—C15—S11.2 (3)
C7—C8—C9—C100.2 (4)C14—S1—C15—N1177.39 (16)
C8—C9—C10—C5−0.4 (3)C14—S1—C15—S2−4.34 (16)
C8—C9—C10—C11179.6 (2)C15—N1—C16—C17126.5 (2)
C6—C5—C10—C9−0.1 (3)C19—N1—C16—C17−55.0 (3)
C4—C5—C10—C9178.67 (19)C18—O3—C17—C16−60.7 (3)
C6—C5—C10—C11179.8 (2)N1—C16—C17—O358.7 (3)
C4—C5—C10—C11−1.4 (3)C17—O3—C18—C1959.6 (3)
C9—C10—C11—C12−176.9 (2)C15—N1—C19—C18−127.2 (2)
C5—C10—C11—C123.2 (3)C16—N1—C19—C1854.3 (3)
C10—C11—C12—C13−1.5 (3)O3—C18—C19—N1−56.7 (3)
O1—C4—C13—C12−176.88 (18)
D—H···AD—HH···AD···AD—H···A
C9—H9···O3i0.932.423.346 (3)173
C18—H18A···O2ii0.972.563.466 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O3i0.932.423.346 (3)173
C18—H18A⋯O2ii0.972.563.466 (3)155

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological evaluation of novel coumarin derivatives with a 7-azomethine linkage.

Authors:  Christos A Kontogiorgis; Dimitra J Hadjipavlou-Litina
Journal:  Bioorg Med Chem Lett       Date:  2004-02-09       Impact factor: 2.823

3.  (7-Chloro-2-oxo-2H-chromen-4-yl)methyl piperidine-1-carbodithio-ate.

Authors:  K Mahesh Kumar; Dalbir Kour; Kamini Kapoor; N M Mahabaleshwaraiah; O Kotresh; Vivek K Gupta; Rajni Kant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure of (7-fluoro-2-oxo-2H-chromen-4-yl)methyl morpholine-4-carbodi-thio-ate.

Authors:  B R Anitha; A Thomas Gunaseelan; M Vinduvahini; H D Kavitha; H C Devarajegowda
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-14

2.  (5,7-Dimethyl-2-oxo-2H-chromen-4-yl)methyl pyrrolidine-1-carbodithio-ate.

Authors:  N M Mahabaleshwaraiah; K Mahesh Kumar; O Kotresh; Waleed Fadl Ali Al-Eryani; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02

3.  (6-Meth-oxy-2-oxo-2H-chromen-4-yl)methyl pyrrolidine-1-carbodithio-ate.

Authors:  N M Mahabaleshwaraiah; K Mahesh Kumar; O Kotresh; Waleed Fadl Ali Al-Eryani; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28

4.  (3-Oxo-3H-benzo[f]chromen-1-yl)methyl N,N-dimethyl-carbamodithio-ate.

Authors:  N M Mahabaleshwaraiah; H R Ravi; M Vinduvahini; H R Sreepad; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
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