Literature DB >> 22412730

(7-Chloro-2-oxo-2H-chromen-4-yl)methyl piperidine-1-carbodithio-ate.

K Mahesh Kumar, Dalbir Kour, Kamini Kapoor, N M Mahabaleshwaraiah, O Kotresh, Vivek K Gupta, Rajni Kant.   

Abstract

In the title compound, C(16)H(16)ClNO(2)S(2), the piperidine ring is in a chair conformation. In the coumarin ring system, the dihedral angle between the benzene and pyran rings is 3.5 (1)°. In the crystal, a weak C-H⋯O hydrogen bond links mol-ecules into chains along [001]. In addition, π-π stacking inter-actions are present involving the benzene and pyran rings, with a centroid-to-centroid distance of 3.712 (2) Å. The crystal studied is a nonmerohedral twin with refined components 0.221 (1) and 0.779 (1).

Entities:  

Year:  2012        PMID: 22412730      PMCID: PMC3297927          DOI: 10.1107/S1600536812007933

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures and properties of coumarins, see: Kulkarni et al. (2006 ▶); Jones et al. (1985 ▶); Trenor et al. (2004 ▶); Hung et al. (2007 ▶). For the applications of dithio­carbamate compounds, see: Bergendorff & Hansson (2002 ▶); Huang et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For ring conformations, see: Duax & Norton (1975 ▶). For the synthesis of the title compound, see: Shastri et al. (2004 ▶); Vasilliev & Polackov (2000 ▶).

Experimental

Crystal data

C16H16ClNO2S2 M = 353.87 Monoclinic, a = 4.9427 (3) Å b = 11.5010 (6) Å c = 14.0006 (8) Å β = 90.271 (6)° V = 795.87 (8) Å3 Z = 2 Mo Kα radiation μ = 0.51 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.886, T max = 1.000 13944 measured reflections 2801 independent reflections 2678 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.082 S = 1.04 2801 reflections 200 parameters 2 restraints H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), with 1394 Friedel pairs Flack parameter: −0.01 (10) Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO ; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812007933/lh5420sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007933/lh5420Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007933/lh5420Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16ClNO2S2F(000) = 368
Mr = 353.87Dx = 1.477 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: p -2ycCell parameters from 7572 reflections
a = 4.9427 (3) Åθ = 3.4–29.0°
b = 11.5010 (6) ŵ = 0.51 mm1
c = 14.0006 (8) ÅT = 293 K
β = 90.271 (6)°Block, white
V = 795.87 (8) Å30.3 × 0.2 × 0.2 mm
Z = 2
Oxford Xcalibur Sapphire3 diffractometer2801 independent reflections
Radiation source: fine-focus sealed tube2678 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 16.1049 pixels mm-1θmax = 25.0°, θmin = 3.4°
ω scansh = −5→5
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −13→13
Tmin = 0.886, Tmax = 1.000l = −16→16
13944 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0367P)2 + 0.3317P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2801 reflectionsΔρmax = 0.14 e Å3
200 parametersΔρmin = −0.18 e Å3
2 restraintsAbsolute structure: Flack (1983), with 1394 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (10)
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.1990 (2)0.77560 (7)0.36977 (7)0.0421 (3)
S20.4685 (3)0.60142 (9)0.24062 (9)0.0525 (3)
Cl1−0.4816 (2)1.27262 (9)0.15209 (9)0.0577 (3)
O10.2148 (6)0.9922 (2)0.03114 (17)0.0429 (7)
C20.4260 (9)0.9155 (3)0.0384 (3)0.0431 (10)
O20.5440 (8)0.8931 (3)−0.03402 (19)0.0583 (9)
C30.4925 (9)0.8712 (3)0.1330 (3)0.0373 (9)
H30.62900.81610.13930.045*
C40.3622 (8)0.9077 (3)0.2120 (2)0.0328 (8)
C100.1525 (8)0.9952 (3)0.2026 (2)0.0315 (8)
C50.0142 (9)1.0460 (3)0.2788 (2)0.0362 (8)
H50.05311.02250.34100.043*
C6−0.1802 (9)1.1309 (3)0.2633 (3)0.0405 (10)
H6−0.26961.16440.31470.049*
C7−0.2409 (8)1.1657 (3)0.1707 (3)0.0372 (9)
C8−0.1117 (9)1.1168 (3)0.0933 (3)0.0385 (9)
H8−0.15381.13960.03130.046*
C90.0813 (8)1.0334 (3)0.1108 (2)0.0354 (9)
C110.4485 (9)0.8620 (3)0.3081 (3)0.0382 (9)
H11B0.49670.92760.34840.046*
H11A0.61000.81530.29980.046*
C120.2473 (9)0.6313 (3)0.3254 (3)0.0378 (9)
N10.0894 (7)0.5538 (3)0.3692 (3)0.0487 (9)
C17−0.0804 (10)0.5754 (4)0.4518 (4)0.0538 (12)
H17A−0.26720.55770.43600.065*
H17B−0.06970.65690.46940.065*
C160.0100 (13)0.5010 (4)0.5353 (4)0.0637 (12)
H16A−0.11260.51270.58840.076*
H16B0.18910.52530.55570.076*
C150.0164 (14)0.3726 (4)0.5096 (4)0.0732 (16)
H15A−0.16680.34460.49970.088*
H15B0.09620.32870.56180.088*
C140.1810 (12)0.3540 (4)0.4192 (4)0.0719 (17)
H14B0.36970.37120.43230.086*
H14A0.16840.27310.40000.086*
C130.0825 (11)0.4303 (3)0.3383 (4)0.0609 (14)
H13A0.19710.41980.28290.073*
H13B−0.10080.40870.32070.073*
U11U22U33U12U13U23
S10.0626 (7)0.0293 (5)0.0344 (5)0.0036 (5)0.0134 (5)0.0018 (4)
S20.0701 (7)0.0446 (6)0.0429 (5)0.0132 (5)0.0119 (6)−0.0038 (5)
Cl10.0600 (7)0.0446 (6)0.0686 (8)0.0118 (5)0.0082 (6)0.0067 (5)
O10.0627 (18)0.0443 (16)0.0218 (12)0.0010 (14)0.0080 (13)−0.0001 (11)
C20.064 (3)0.0350 (19)0.031 (2)−0.003 (2)0.0083 (19)−0.0062 (16)
O20.083 (2)0.0600 (19)0.0322 (16)0.0051 (18)0.0230 (17)−0.0058 (13)
C30.048 (2)0.0316 (18)0.0324 (19)−0.0030 (18)0.0071 (19)−0.0001 (15)
C40.041 (2)0.0289 (18)0.0287 (19)−0.0076 (15)0.0040 (15)0.0011 (14)
C100.040 (2)0.0283 (18)0.0258 (19)−0.0056 (16)0.0035 (15)0.0010 (14)
C50.050 (2)0.0362 (19)0.0224 (17)−0.0096 (19)0.0046 (16)−0.0007 (14)
C60.053 (3)0.034 (2)0.035 (2)−0.0039 (18)0.0123 (18)−0.0036 (16)
C70.040 (2)0.0297 (19)0.042 (2)−0.0062 (16)0.0032 (18)0.0033 (16)
C80.051 (3)0.034 (2)0.0305 (19)−0.0055 (18)0.0035 (18)0.0056 (16)
C90.050 (2)0.0311 (18)0.0255 (18)−0.0070 (17)0.0069 (16)−0.0014 (14)
C110.050 (3)0.0372 (18)0.0272 (19)0.0007 (18)0.0024 (17)−0.0029 (16)
C120.049 (2)0.034 (2)0.0302 (19)0.0047 (18)−0.0042 (18)0.0013 (15)
N10.061 (2)0.0286 (16)0.056 (2)0.0022 (15)0.006 (2)0.0004 (15)
C170.060 (3)0.037 (2)0.064 (3)−0.001 (2)0.013 (2)0.009 (2)
C160.076 (3)0.055 (3)0.060 (3)−0.005 (3)−0.005 (3)0.012 (2)
C150.087 (4)0.044 (2)0.088 (4)−0.011 (3)−0.029 (4)0.023 (3)
C140.070 (4)0.034 (2)0.112 (5)0.001 (2)−0.028 (4)−0.003 (3)
C130.077 (4)0.031 (2)0.075 (3)−0.003 (2)0.006 (3)−0.008 (2)
S1—C121.788 (4)C8—H80.9300
S1—C111.807 (4)C11—H11B0.9700
S2—C121.654 (4)C11—H11A0.9700
Cl1—C71.730 (4)C12—N11.336 (5)
O1—C21.371 (5)N1—C171.454 (5)
O1—C91.382 (4)N1—C131.485 (5)
C2—O21.200 (4)C17—C161.514 (6)
C2—C31.456 (5)C17—H17A0.9700
C3—C41.349 (5)C17—H17B0.9700
C3—H30.9300C16—C151.521 (7)
C4—C101.450 (5)C16—H16A0.9700
C4—C111.505 (5)C16—H16B0.9700
C10—C51.398 (5)C15—C141.524 (8)
C10—C91.402 (5)C15—H15A0.9700
C5—C61.386 (6)C15—H15B0.9700
C5—H50.9300C14—C131.511 (7)
C6—C71.388 (5)C14—H14B0.9700
C6—H60.9300C14—H14A0.9700
C7—C81.380 (6)C13—H13A0.9700
C8—C91.374 (6)C13—H13B0.9700
C12—S1—C11104.60 (18)N1—C12—S1112.4 (3)
C2—O1—C9121.8 (3)S2—C12—S1122.2 (2)
O2—C2—O1116.7 (4)C12—N1—C17126.3 (3)
O2—C2—C3125.9 (4)C12—N1—C13121.2 (4)
O1—C2—C3117.5 (3)C17—N1—C13112.5 (4)
C4—C3—C2122.1 (4)N1—C17—C16110.4 (4)
C4—C3—H3119.0N1—C17—H17A109.6
C2—C3—H3119.0C16—C17—H17A109.6
C3—C4—C10119.1 (3)N1—C17—H17B109.6
C3—C4—C11119.3 (4)C16—C17—H17B109.6
C10—C4—C11121.5 (3)H17A—C17—H17B108.1
C5—C10—C9116.6 (3)C17—C16—C15111.8 (5)
C5—C10—C4125.0 (3)C17—C16—H16A109.2
C9—C10—C4118.5 (3)C15—C16—H16A109.2
C6—C5—C10121.0 (3)C17—C16—H16B109.2
C6—C5—H5119.5C15—C16—H16B109.2
C10—C5—H5119.5H16A—C16—H16B107.9
C5—C6—C7119.8 (4)C16—C15—C14110.2 (4)
C5—C6—H6120.1C16—C15—H15A109.6
C7—C6—H6120.1C14—C15—H15A109.6
C8—C7—C6121.1 (4)C16—C15—H15B109.6
C8—C7—Cl1119.5 (3)C14—C15—H15B109.6
C6—C7—Cl1119.4 (3)H15A—C15—H15B108.1
C9—C8—C7117.9 (4)C13—C14—C15111.7 (5)
C9—C8—H8121.0C13—C14—H14B109.3
C7—C8—H8121.0C15—C14—H14B109.3
C8—C9—O1115.4 (3)C13—C14—H14A109.3
C8—C9—C10123.6 (3)C15—C14—H14A109.3
O1—C9—C10120.9 (3)H14B—C14—H14A107.9
C4—C11—S1115.4 (3)N1—C13—C14109.3 (4)
C4—C11—H11B108.4N1—C13—H13A109.8
S1—C11—H11B108.4C14—C13—H13A109.8
C4—C11—H11A108.4N1—C13—H13B109.8
S1—C11—H11A108.4C14—C13—H13B109.8
H11B—C11—H11A107.5H13A—C13—H13B108.3
N1—C12—S2125.5 (3)
C9—O1—C2—O2−173.5 (4)C5—C10—C9—C80.5 (5)
C9—O1—C2—C34.7 (5)C4—C10—C9—C8−179.1 (4)
O2—C2—C3—C4174.8 (4)C5—C10—C9—O1177.1 (3)
O1—C2—C3—C4−3.2 (6)C4—C10—C9—O1−2.5 (5)
C2—C3—C4—C10−1.1 (6)C3—C4—C11—S1−115.6 (4)
C2—C3—C4—C11−177.6 (4)C10—C4—C11—S168.0 (4)
C3—C4—C10—C5−175.7 (4)C12—S1—C11—C486.3 (3)
C11—C4—C10—C50.7 (5)C11—S1—C12—N1175.5 (3)
C3—C4—C10—C93.9 (5)C11—S1—C12—S2−3.6 (3)
C11—C4—C10—C9−179.7 (3)S2—C12—N1—C17171.5 (4)
C9—C10—C5—C6−0.9 (5)S1—C12—N1—C17−7.6 (5)
C4—C10—C5—C6178.7 (4)S2—C12—N1—C13−5.4 (6)
C10—C5—C6—C70.5 (6)S1—C12—N1—C13175.4 (3)
C5—C6—C7—C80.3 (6)C12—N1—C17—C16−117.9 (5)
C5—C6—C7—Cl1−179.4 (3)C13—N1—C17—C1659.3 (5)
C6—C7—C8—C9−0.7 (6)N1—C17—C16—C15−55.2 (6)
Cl1—C7—C8—C9179.0 (3)C17—C16—C15—C1452.2 (7)
C7—C8—C9—O1−176.5 (3)C16—C15—C14—C13−53.3 (6)
C7—C8—C9—C100.3 (6)C12—N1—C13—C14117.5 (5)
C2—O1—C9—C8175.0 (3)C17—N1—C13—C14−59.8 (6)
C2—O1—C9—C10−1.9 (5)C15—C14—C13—N156.3 (6)
D—H···AD—HH···AD···AD—H···A
C17—H17B···S10.972.362.923 (5)116
C13—H13A···S20.972.553.067 (4)113
C6—H6···O2i0.932.413.167 (5)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O2i0.932.413.167 (5)139

Symmetry code: (i) .

  6 in total

Review 1.  Coumarins in polymers: from light harvesting to photo-cross-linkable tissue scaffolds.

Authors:  Scott R Trenor; Allan R Shultz; Brian J Love; Timothy E Long
Journal:  Chem Rev       Date:  2004-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Spontaneous formation of thiuram disulfides in solutions of iron(III) dithiocarbamates.

Authors:  Ola Bergendorff; C Hansson
Journal:  J Agric Food Chem       Date:  2002-02-27       Impact factor: 5.279

Review 4.  Recent advances in coumarins and 1-azacoumarins as versatile biodynamic agents.

Authors:  Manohar V Kulkarni; Geeta M Kulkarni; Chao-Hsiung Lin; Chung-Ming Sun
Journal:  Curr Med Chem       Date:  2006       Impact factor: 4.530

5.  Synthesis and antitumor activity of novel dithiocarbamate substituted chromones.

Authors:  Wei Huang; Yu Ding; Yan Miao; Ming-Zhen Liu; Yan Li; Guang-Fu Yang
Journal:  Eur J Med Chem       Date:  2009-04-09       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  7 in total

1.  (6-Meth-oxy-2-oxo-2H-chromen-4-yl)methyl piperidine-1-carbodi-thio-ate.

Authors:  K Mahesh Kumar; M Vinduvahini; N M Mahabhaleshwaraiah; O Kotresh; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

2.  (5,7-Dimethyl-2-oxo-2H-chromen-4-yl)methyl pyrrolidine-1-carbodithio-ate.

Authors:  N M Mahabaleshwaraiah; K Mahesh Kumar; O Kotresh; Waleed Fadl Ali Al-Eryani; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02

3.  (6-Meth-oxy-2-oxo-2H-chromen-4-yl)methyl morpholine-4-carbodithio-ate.

Authors:  H C Devarajegowda; K Mahesh Kumar; S Seenivasa; H K Arunkashi; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09

4.  (3-Oxo-3H-benzo[f]chromen-1-yl)methyl piperidine-1-carbodithio-ate.

Authors:  O Kotresh; K Mahesh Kumar; N M Mahabaleshwaraiah; H K Arunkashi; H C Devarajegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20

5.  (7-Chloro-2-oxo-2H-chromen-4-yl)methyl di-ethyl-carbamodi-thio-ate.

Authors:  T G Meenakshi; J Shylajakumari; H C Devarajegowda; K Mahesh Kumar; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-14

6.  (5,7-Dimethyl-2-oxo-2H-chromen-4-yl)methyl diethyl-dithio-carbamate.

Authors:  K Mahesh Kumar; H C Devarajegowda; S Jeyaseelan; N M Mahabaleshwaraiah; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

7.  (2-Oxo-2H-benzo[h]chromen-4-yl)methyl morpholine-4-carbodithio-ate.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Gurvinder Kour; K Mahesh Kumar; N M Mahabaleshwaraiah; O Kotresh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  7 in total

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