Literature DB >> 22582379

Genome sequence of Shigella flexneri serotype 5a strain M90T Sm.

Naoko T Onodera1, Julie Ryu, Tanja Durbic, Corey Nislow, John M Archibald, John R Rohde.   

Abstract

Bacteria of the genus Shigella are a major cause of death worldwide (L. von Seidlein et al., PLoS Med. 3:e353, 2006). We sequenced the genome of Shigella flexneri strain M90T Sm (serotype 5a) and compared it to the published genome sequence of S. flexneri strain 8401 (serotype 5b).

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Year:  2012        PMID： 22582379      PMCID： PMC3370606          DOI： 10.1128/JB.00393-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  icsB: a Shigella flexneri virulence gene necessary for the lysis of protrusions during intercellular spread.

Authors:  A Allaoui; J Mounier; M C Prévost; P J Sansonetti; C Parsot
Journal:  Mol Microbiol       Date:  1992-06       Impact factor: 3.501

Review 3.  Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road.

Authors:  Myron M Levine; Karen L Kotloff; Eileen M Barry; Marcela F Pasetti; Marcelo B Sztein
Journal:  Nat Rev Microbiol       Date:  2007-07       Impact factor: 60.633

4.  Mucosal lymphoid infiltrate dominates colonic pathological changes in murine experimental shigellosis.

Authors:  Maria Celeste Martino; Giacomo Rossi; Irene Martini; Ivan Tattoli; Damiana Chiavolini; Armelle Phalipon; Philippe J Sansonetti; Maria Lina Bernardini
Journal:  J Infect Dis       Date:  2005-05-31       Impact factor: 5.226

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

6.  Involvement of a plasmid in the invasive ability of Shigella flexneri.

Authors:  P J Sansonetti; D J Kopecko; S B Formal
Journal:  Infect Immun       Date:  1982-03       Impact factor: 3.441

7.  Integrative genomics viewer.

Authors:  James T Robinson; Helga Thorvaldsdóttir; Wendy Winckler; Mitchell Guttman; Eric S Lander; Gad Getz; Jill P Mesirov
Journal:  Nat Biotechnol       Date:  2011-01       Impact factor: 54.908

8.  Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.

Authors:  Huan Nie; Fan Yang; Xiaobing Zhang; Jian Yang; Lihong Chen; Jing Wang; Zhaohui Xiong; Junping Peng; Lilian Sun; Jie Dong; Ying Xue; Xingye Xu; Shuxia Chen; Zhijian Yao; Yan Shen; Qi Jin
Journal:  BMC Genomics       Date:  2006-07-06       Impact factor: 3.969

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937
  9 in total
  21 in total

1.  Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant Shigella flexneri clone in China.

Authors:  Nan Zhang; Ruiting Lan; Qiangzheng Sun; Jianping Wang; Yiting Wang; Jin Zhang; Deshan Yu; Wanfu Hu; Shoukui Hu; Hang Dai; Pengcheng Du; Haiyin Wang; Jianguo Xu
Journal:  J Clin Microbiol       Date:  2014-01-22       Impact factor: 5.948

2.  E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis.

Authors:  Jonathan N Pruneda; F Donelson Smith; Angela Daurie; Danielle L Swaney; Judit Villén; John D Scott; Andrew W Stadnyk; Isolde Le Trong; Ronald E Stenkamp; Rachel E Klevit; John R Rohde; Peter S Brzovic
Journal:  EMBO J       Date:  2014-01-20       Impact factor: 11.598

3.  Visualization of the type III secretion sorting platform of Shigella flexneri.

Authors:  Bo Hu; Dustin R Morado; William Margolin; John R Rohde; Olivia Arizmendi; Wendy L Picking; William D Picking; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

4.  The cytoplasmic domain of MxiG interacts with MxiK and directs assembly of the sorting platform in the Shigella type III secretion system.

Authors:  Shoichi Tachiyama; Yunjie Chang; Meenakumari Muthuramalingam; Bo Hu; Michael L Barta; Wendy L Picking; Jun Liu; William D Picking
Journal:  J Biol Chem       Date:  2019-11-07       Impact factor: 5.157

5.  Laboratory Cultivation and Storage of Shigella.

Authors:  Shelley M Payne
Journal:  Curr Protoc Microbiol       Date:  2019-12

6.  Shigella outer membrane protein PSSP-1 is broadly protective against Shigella infection.

Authors:  Jae-Ouk Kim; Semi Rho; Su Hee Kim; Heejoo Kim; Hyo Jin Song; Eun Jin Kim; Ryang Yeo Kim; Eun Hye Kim; Anuradha Sinha; Ayan Dey; Jae Seung Yang; Man Ki Song; Ranjan Kumar Nandy; Cecil Czerkinsky; Dong Wook Kim
Journal:  Clin Vaccine Immunol       Date:  2015-02-04

7.  Overexpression, purification, crystallization and preliminary X-ray crystallographic analysis of SF173 from Shigella flexneri.

Authors:  Ha-Neul Kim; Jeong-Gi An; Yoo-Sup Lee; Seung-Hyeon Seok; Hee-Seop Yoo; Min-Duk Seo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

8.  icaR and icaT are Ancient Chromosome Genes Encoding Substrates of the Type III Secretion Apparatus in Shigella flexneri.

Authors:  Navoun Silué; François-Xavier Campbell-Valois
Journal:  mSphere       Date:  2022-05-02       Impact factor: 5.029

9.  Virulent Shigella flexneri affects secretion, expression, and glycosylation of gel-forming mucins in mucus-producing cells.

Authors:  Brice Sperandio; Natalie Fischer; Marie Joncquel Chevalier-Curt; Yannick Rossez; Pascal Roux; Catherine Robbe Masselot; Philippe J Sansonetti
Journal:  Infect Immun       Date:  2013-07-22       Impact factor: 3.441

10.  Shigella Phages Isolated during a Dysentery Outbreak Reveal Uncommon Structures and Broad Species Diversity.

Authors:  Sarah M Doore; Jason R Schrad; William F Dean; John A Dover; Kristin N Parent
Journal:  J Virol       Date:  2018-03-28       Impact factor: 5.103
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