Literature DB >> 22578126

Simplified and versatile method for isolation of high-quality RNA from pancreas.

Michelle Griffin1, Maisam Abu-El-Haija, Marwa Abu-El-Haija, Tatiana Rokhlina, Aliye Uc.   

Abstract

Isolation of high-quality RNA from pancreas is challenging because the organ contains large quantities of RNases and undergoes autolysis upon harvest. Here we present a simplified perfusion method of the pancreas using an RNase inhibitor. The technique consistently yields high-quality RNA from stored pancreas samples suitable for molecular biology applications, including quantitative RT-PCR. Yields are comparable to RNA isolated from pancreas immediately, but superior to RNA isolated from stored samples that were snap-frozen or immersed in an RNase inhibitor solution. In addition, when compared to the previously reported in situ ductal perfusion technique, our method does not cause histological artifacts.

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Year:  2012        PMID: 22578126      PMCID: PMC3738267          DOI: 10.2144/0000113862

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  11 in total

1.  Semiquantitative polymerase chain reaction in RNase-producing tissues: Analysis of the developing pancreas.

Authors:  M J Hembree; K Prasadan; P Manna; B Preuett; T Spilde; A Bhatia; H Kobayashi; B Buckingham; C L Snyder; G K Gittes
Journal:  J Pediatr Surg       Date:  2001-11       Impact factor: 2.545

2.  High-quality RNA extraction from rat pancreas for microarray analysis.

Authors:  Takayoshi Kiba; Yuri Kintaka; Eiko Nakada; Yoko Suzuki; Shuji Inoue; Yasuhito Ishigaki
Journal:  Pancreas       Date:  2007-07       Impact factor: 3.327

Review 3.  RNA integrity and the effect on the real-time qRT-PCR performance.

Authors:  Simone Fleige; Michael W Pfaffl
Journal:  Mol Aspects Med       Date:  2006-02-15

4.  Ensuring recovery of intact RNA from rat pancreas.

Authors:  S S Gill; R A Aubin; C A Bura; I H Curran; T I Matula
Journal:  Mol Biotechnol       Date:  1996-12       Impact factor: 2.695

5.  Tissue homogenization as a key step in extracting RNA from human and rat pancreatic tissue.

Authors:  G Sparmann; A Jäschke; M Loehr; S Liebe; J Emmrich
Journal:  Biotechniques       Date:  1997-03       Impact factor: 1.993

6.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

7.  Application of in situ ductal perfusion to facilitate isolation of high-quality RNA from mouse pancreas.

Authors:  Anne E Mullin; Galina Soukatcheva; C Bruce Verchere; Janet K Chantler
Journal:  Biotechniques       Date:  2006-05       Impact factor: 1.993

8.  A modified method using TRIzol reagent and liquid nitrogen produces high-quality RNA from rat pancreas.

Authors:  Dongmin Li; Wuchao Ren; Xuan Wang; Feimiao Wang; Yu Gao; Qilan Ning; Yan Han; Tianbao Song; Shemin Lu
Journal:  Appl Biochem Biotechnol       Date:  2008-10-18       Impact factor: 2.926

9.  Production of CFTR-null and CFTR-DeltaF508 heterozygous pigs by adeno-associated virus-mediated gene targeting and somatic cell nuclear transfer.

Authors:  Christopher S Rogers; Yanhong Hao; Tatiana Rokhlina; Melissa Samuel; David A Stoltz; Yuhong Li; Elena Petroff; Daniel W Vermeer; Amanda C Kabel; Ziying Yan; Lee Spate; David Wax; Clifton N Murphy; August Rieke; Kristin Whitworth; Michael L Linville; Scott W Korte; John F Engelhardt; Michael J Welsh; Randall S Prather
Journal:  J Clin Invest       Date:  2008-04       Impact factor: 14.808

10.  Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.

Authors:  J M Chirgwin; A E Przybyla; R J MacDonald; W J Rutter
Journal:  Biochemistry       Date:  1979-11-27       Impact factor: 3.162

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  11 in total

1.  RNA isolation from mouse pancreas: a ribonuclease-rich tissue.

Authors:  Ana Clara P Azevedo-Pouly; Ola A Elgamal; Thomas D Schmittgen
Journal:  J Vis Exp       Date:  2014-08-02       Impact factor: 1.355

2.  Characterization of RNA isolated from eighteen different human tissues: results from a rapid human autopsy program.

Authors:  Douglas G Walker; Alexis M Whetzel; Geidy Serrano; Lucia I Sue; Lih-Fen Lue; Thomas G Beach
Journal:  Cell Tissue Bank       Date:  2016-04-16       Impact factor: 1.522

3.  Type 1 diabetes cadaveric human pancreata exhibit a unique exocrine tissue proteomic profile.

Authors:  Chih-Wei Liu; Mark A Atkinson; Qibin Zhang
Journal:  Proteomics       Date:  2016-04-13       Impact factor: 3.984

4.  Chronic jetlag-induced alterations in pancreatic diurnal gene expression.

Authors:  Patrick B Schwartz; Morgan T Walcheck; Mark Berres; Manabu Nukaya; Gang Wu; Noah D Carrillo; Kristina A Matkowskyj; Sean M Ronnekleiv-Kelly
Journal:  Physiol Genomics       Date:  2021-05-31       Impact factor: 4.297

5.  Optimization of RNA extraction from rat pancreatic tissue.

Authors:  Sanaz Dastgheib; Cambyz Irajie; Raheleh Assaei; Farhad Koohpeima; Pooneh Mokarram
Journal:  Iran J Med Sci       Date:  2014-05

6.  Hepatic transcriptome implications for palm fruit juice deterrence of type 2 diabetes mellitus in young male Nile rats.

Authors:  Soon-Sen Leow; Julia Bolsinger; Andrzej Pronczuk; K C Hayes; Ravigadevi Sambanthamurthi
Journal:  Genes Nutr       Date:  2016-10-22       Impact factor: 5.523

7.  Preservation of Multiple Mammalian Tissues to Maximize Science Return from Ground Based and Spaceflight Experiments.

Authors:  Sungshin Choi; Hami E Ray; San-Huei Lai; Joshua S Alwood; Ruth K Globus
Journal:  PLoS One       Date:  2016-12-01       Impact factor: 3.240

8.  Establishment and quality evaluation of a glioma biobank in Beijing Tiantan Hospital.

Authors:  Fanhong Kong; Wenli Zhang; Lin Qiao; Qi Li; Haowen Li; Jingli Cao; Wenyan He; Chengya Dong; Yanjiao He; Lu He; Li Liu; Weilun Fu; Lijun Liu; Zirui Li; Yajie Wang
Journal:  PeerJ       Date:  2018-03-13       Impact factor: 2.984

9.  Method Optimization for Extracting High-Quality RNA From the Human Pancreas Tissue.

Authors:  Eunsung Jun; Juyun Oh; Song Lee; Hye-Ryeong Jun; Eun Hye Seo; Jin-Young Jang; Song Cheol Kim
Journal:  Transl Oncol       Date:  2018-04-27       Impact factor: 4.243

10.  Comparative analysis of RNA sequencing methods for degraded or low-input samples.

Authors:  Xian Adiconis; Diego Borges-Rivera; Rahul Satija; David S DeLuca; Michele A Busby; Aaron M Berlin; Andrey Sivachenko; Dawn Anne Thompson; Alec Wysoker; Timothy Fennell; Andreas Gnirke; Nathalie Pochet; Aviv Regev; Joshua Z Levin
Journal:  Nat Methods       Date:  2013-05-19       Impact factor: 28.547

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