Literature DB >> 22570807

A resource for the conditional ablation of microRNAs in the mouse.

Chong Yon Park1, Lukas T Jeker, Karen Carver-Moore, Alyssia Oh, Huey Jiin Liu, Rachel Cameron, Hunter Richards, Zhongmei Li, David Adler, Yuko Yoshinaga, Maria Martinez, Michael Nefadov, Abul K Abbas, Art Weiss, Lewis L Lanier, Pieter J de Jong, Jeffrey A Bluestone, Deepak Srivastava, Michael T McManus.   

Abstract

The importance of miRNAs during development and disease processes is well established. However, most studies have been done in cells or with patient tissues, and therefore the physiological roles of miRNAs are not well understood. To unravel in vivo functions of miRNAs, we have generated conditional, reporter-tagged knockout-first mice for numerous evolutionarily conserved miRNAs. Here, we report the generation of 162 miRNA targeting vectors, 64 targeted ES cell lines, and 46 germline-transmitted miRNA knockout mice. In vivo lacZ reporter analysis in 18 lines revealed highly tissue-specific expression patterns and their miRNA expression profiling matched closely with published expression data. Most miRNA knockout mice tested were viable, supporting a mechanism by which miRNAs act redundantly with other miRNAs or other pathways. These data and collection of resources will be of value for the in vivo dissection of miRNA functions in mouse models.

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Year:  2012        PMID: 22570807      PMCID: PMC3345170          DOI: 10.1016/j.celrep.2012.02.008

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  30 in total

1.  A microRNA array reveals extensive regulation of microRNAs during brain development.

Authors:  Anna M Krichevsky; Kevin S King; Christine P Donahue; Konstantin Khrapko; Kenneth S Kosik
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

2.  A reliable lacZ expression reporter cassette for multipurpose, knockout-first alleles.

Authors:  Giuseppe Testa; Julia Schaft; Frank van der Hoeven; Stefan Glaser; Konstantinos Anastassiadis; Youming Zhang; Thomas Hermann; Wolfgang Stremmel; A Francis Stewart
Journal:  Genesis       Date:  2004-03       Impact factor: 2.487

3.  A conditional knockout resource for the genome-wide study of mouse gene function.

Authors:  William C Skarnes; Barry Rosen; Anthony P West; Manousos Koutsourakis; Wendy Bushell; Vivek Iyer; Alejandro O Mujica; Mark Thomas; Jennifer Harrow; Tony Cox; David Jackson; Jessica Severin; Patrick Biggs; Jun Fu; Michael Nefedov; Pieter J de Jong; A Francis Stewart; Allan Bradley
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

4.  Bacterial artificial chromosome libraries for mouse sequencing and functional analysis.

Authors:  K Osoegawa; M Tateno; P Y Woon; E Frengen; A G Mammoser; J J Catanese; Y Hayashizaki; P J de Jong
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

Review 5.  Analysis of microRNA knockouts in mice.

Authors:  Chong Y Park; Yun S Choi; Michael T McManus
Journal:  Hum Mol Genet       Date:  2010-08-30       Impact factor: 6.150

6.  The knockout mouse project.

Authors:  Christopher P Austin; James F Battey; Allan Bradley; Maja Bucan; Mario Capecchi; Francis S Collins; William F Dove; Geoffrey Duyk; Susan Dymecki; Janan T Eppig; Franziska B Grieder; Nathaniel Heintz; Geoff Hicks; Thomas R Insel; Alexandra Joyner; Beverly H Koller; K C Kent Lloyd; Terry Magnuson; Mark W Moore; Andras Nagy; Jonathan D Pollock; Allen D Roses; Arthur T Sands; Brian Seed; William C Skarnes; Jay Snoddy; Philippe Soriano; David J Stewart; Francis Stewart; Bruce Stillman; Harold Varmus; Lyuba Varticovski; Inder M Verma; Thomas F Vogt; Harald von Melchner; Jan Witkowski; Richard P Woychik; Wolfgang Wurst; George D Yancopoulos; Stephen G Young; Brian Zambrowicz
Journal:  Nat Genet       Date:  2004-09       Impact factor: 38.330

7.  Isolation of specific clones from nonarrayed BAC libraries through homologous recombination.

Authors:  Mikhail Nefedov; Lucia Carbone; Matthew Field; Jacquie Schein; Pieter J de Jong
Journal:  J Biomed Biotechnol       Date:  2010-10-13

8.  A resource of vectors and ES cells for targeted deletion of microRNAs in mice.

Authors:  Haydn M Prosser; Hiroko Koike-Yusa; James D Cooper; Frances C Law; Allan Bradley
Journal:  Nat Biotechnol       Date:  2011-08-07       Impact factor: 54.908

9.  Microarray analysis of microRNA expression in the developing mammalian brain.

Authors:  Eric A Miska; Ezequiel Alvarez-Saavedra; Matthew Townsend; Akira Yoshii; Nenad Sestan; Pasko Rakic; Martha Constantine-Paton; H Robert Horvitz
Journal:  Genome Biol       Date:  2004-08-31       Impact factor: 13.583

10.  The European dimension for the mouse genome mutagenesis program.

Authors:  Johan Auwerx; Phil Avner; Richard Baldock; Andrea Ballabio; Rudi Balling; Mariano Barbacid; Anton Berns; Allan Bradley; Steve Brown; Peter Carmeliet; Pierre Chambon; Roger Cox; Duncan Davidson; Kay Davies; Denis Duboule; Jiri Forejt; Francesca Granucci; Nick Hastie; Martin Hrabé de Angelis; Ian Jackson; Dimitris Kioussis; George Kollias; Mark Lathrop; Urban Lendahl; Marcos Malumbres; Harald von Melchner; Werner Müller; Juha Partanen; Paola Ricciardi-Castagnoli; Peter Rigby; Barry Rosen; Nadia Rosenthal; Bill Skarnes; A Francis Stewart; Janet Thornton; Glauco Tocchini-Valentini; Erwin Wagner; Walter Wahli; Wolfgang Wurst
Journal:  Nat Genet       Date:  2004-09       Impact factor: 38.330

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  103 in total

Review 1.  The impact of microRNA gene regulation on the survival and function of mature cell types in the eye.

Authors:  Thomas R Sundermeier; Krzysztof Palczewski
Journal:  FASEB J       Date:  2015-09-23       Impact factor: 5.191

Review 2.  The roles of microRNAs in mouse development.

Authors:  Brian DeVeale; Jennifer Swindlehurst-Chan; Robert Blelloch
Journal:  Nat Rev Genet       Date:  2021-01-15       Impact factor: 53.242

3.  Short-term memory of danger signals and environmental stimuli in immune cells.

Authors:  Silvia Monticelli; Gioacchino Natoli
Journal:  Nat Immunol       Date:  2013-08       Impact factor: 25.606

Review 4.  Managing microRNAs with vector-encoded decoy-type inhibitors.

Authors:  Rasmus O Bak; Anne Kruse Hollensen; Jacob Giehm Mikkelsen
Journal:  Mol Ther       Date:  2013-06-11       Impact factor: 11.454

5.  TALEN-based knockout library for human microRNAs.

Authors:  Young-Kook Kim; Gabbine Wee; Joha Park; Jongkyu Kim; Daehyun Baek; Jin-Soo Kim; V Narry Kim
Journal:  Nat Struct Mol Biol       Date:  2013-11-10       Impact factor: 15.369

6.  Simultaneous gene editing by injection of mRNAs encoding transcription activator-like effector nucleases into mouse zygotes.

Authors:  Chunliang Li; Rong Qi; Rebecca Singleterry; Judith Hyle; Amanda Balch; Xiuling Li; Jack Sublett; Hartmut Berns; Marcus Valentine; Virginia Valentine; Charles J Sherr
Journal:  Mol Cell Biol       Date:  2014-02-24       Impact factor: 4.272

7.  Functional screen reveals essential roles of miR-27a/24 in differentiation of embryonic stem cells.

Authors:  Yanni Ma; Nan Yao; Guang Liu; Lei Dong; Yufang Liu; Meili Zhang; Fang Wang; Bin Wang; Xueju Wei; He Dong; Lanlan Wang; Shaowei Ji; Junwu Zhang; Yangming Wang; Yue Huang; Jia Yu
Journal:  EMBO J       Date:  2014-12-17       Impact factor: 11.598

Review 8.  After GWAS: mice to the rescue?

Authors:  Joerg Ermann; Laurie H Glimcher
Journal:  Curr Opin Immunol       Date:  2012-09-29       Impact factor: 7.486

Review 9.  The biological functions of miRNAs: lessons from in vivo studies.

Authors:  Joana A Vidigal; Andrea Ventura
Journal:  Trends Cell Biol       Date:  2014-12-04       Impact factor: 20.808

Review 10.  MicroRNA-mediated control of macrophages and its implications for cancer.

Authors:  Mario Leonardo Squadrito; Martin Etzrodt; Michele De Palma; Mikael J Pittet
Journal:  Trends Immunol       Date:  2013-03-13       Impact factor: 16.687

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