Literature DB >> 22550233

The structure and function of the eukaryotic ribosome.

Daniel N Wilson1, Jamie H Doudna Cate.   

Abstract

Structures of the bacterial ribosome have provided a framework for understanding universal mechanisms of protein synthesis. However, the eukaryotic ribosome is much larger than it is in bacteria, and its activity is fundamentally different in many key ways. Recent cryo-electron microscopy reconstructions and X-ray crystal structures of eukaryotic ribosomes and ribosomal subunits now provide an unprecedented opportunity to explore mechanisms of eukaryotic translation and its regulation in atomic detail. This review describes the X-ray crystal structures of the Tetrahymena thermophila 40S and 60S subunits and the Saccharomyces cerevisiae 80S ribosome, as well as cryo-electron microscopy reconstructions of translating yeast and plant 80S ribosomes. Mechanistic questions about translation in eukaryotes that will require additional structural insights to be resolved are also presented.

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Year:  2012        PMID: 22550233      PMCID: PMC3331703          DOI: 10.1101/cshperspect.a011536

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  132 in total

1.  The crystal structure of eEF1A refines the functional predictions of an evolutionary analysis of rate changes among elongation factors.

Authors:  Eric A Gaucher; Ujjwal K Das; Michael M Miyamoto; Steven A Benner
Journal:  Mol Biol Evol       Date:  2002-04       Impact factor: 16.240

2.  Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA.

Authors:  Ditlev E Brodersen; William M Clemons; Andrew P Carter; Brian T Wimberly; V Ramakrishnan
Journal:  J Mol Biol       Date:  2002-02-22       Impact factor: 5.469

Review 3.  Regulatory nascent peptides in the ribosomal tunnel.

Authors:  Tanel Tenson; Måns Ehrenberg
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

4.  Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM.

Authors:  Jayati Sengupta; Jakob Nilsson; Richard Gursky; Christian M T Spahn; Poul Nissen; Joachim Frank
Journal:  Nat Struct Mol Biol       Date:  2004-08-29       Impact factor: 15.369

5.  Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface.

Authors:  S Srivastava; A Verschoor; J Frank
Journal:  J Mol Biol       Date:  1992-07-20       Impact factor: 5.469

Review 6.  Eukaryotic initiation factors eIF-2 and eIF-3: interactions, structure and localization in ribosomal initiation complexes.

Authors:  U A Bommer; G Lutsch; J Stahl; H Bielka
Journal:  Biochimie       Date:  1991 Jul-Aug       Impact factor: 4.079

Review 7.  Regulation of translation initiation in eukaryotes: mechanisms and biological targets.

Authors:  Nahum Sonenberg; Alan G Hinnebusch
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

8.  Linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.

Authors:  Thierry Lacombe; Juan J García-Gómez; Jesús de la Cruz; Daniela Roser; Ed Hurt; Patrick Linder; Dieter Kressler
Journal:  Mol Microbiol       Date:  2009-02-04       Impact factor: 3.501

9.  Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

Authors:  Christian M T Spahn; Eric Jan; Anke Mulder; Robert A Grassucci; Peter Sarnow; Joachim Frank
Journal:  Cell       Date:  2004-08-20       Impact factor: 41.582

10.  Distinct functions of elongation factor G in ribosome recycling and translocation.

Authors:  Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  RNA       Date:  2009-03-26       Impact factor: 4.942

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  102 in total

1.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Translational Regulation of Cytoplasmic mRNAs.

Authors:  Bijoyita Roy; Albrecht G von Arnim
Journal:  Arabidopsis Book       Date:  2013-07-18

4.  Ribosomal Protein L13 Promotes IRES-Driven Translation of Foot-and-Mouth Disease Virus in a Helicase DDX3-Dependent Manner.

Authors:  Shichong Han; Shiqi Sun; Pinghua Li; Qun Liu; Zhihui Zhang; Hu Dong; Mengmeng Sun; Wenxue Wu; Xiaojia Wang; Huichen Guo
Journal:  J Virol       Date:  2020-01-06       Impact factor: 5.103

5.  Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Authors:  Joana Pinto Vieira; Julien Racle; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 6.  Probing the mechanisms of translation with force.

Authors:  Christian M Kaiser; Ignacio Tinoco
Journal:  Chem Rev       Date:  2014-01-09       Impact factor: 60.622

7.  Mechanism of cytoplasmic mRNA translation.

Authors:  Karen S Browning; Julia Bailey-Serres
Journal:  Arabidopsis Book       Date:  2015-04-24

8.  Dissecting macromolecular recognition sites in ribosome: implication to its self-assembly.

Authors:  Smita P Pilla; Amal Thomas; Ranjit Prasad Bahadur
Journal:  RNA Biol       Date:  2019-06-17       Impact factor: 4.652

9.  How to Make an Extraordinary Machine: SMALL ORGAN4 Regulates Ribosome Biogenesis in Plants.

Authors:  Eva Hellmann
Journal:  Plant Physiol       Date:  2020-12       Impact factor: 8.340

Review 10.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

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