Literature DB >> 22549728

PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis.

Bernard Gutmann1, Anthony Gobert, Philippe Giegé.   

Abstract

RNase P is an essential enzyme that cleaves the 5' leader sequence of tRNA precursors. RNase Ps were believed until now to occur universally as ribonucleoproteins in organisms performing RNase P activity. Here we find that protein-only RNase P enzymes called PRORP (for proteinaceous RNase P) support RNase P activity in vivo in both organelles and the nucleus in Arabidopsis. Beyond tRNA, PRORP proteins are involved in the maturation of small nucleolar RNA (snoRNA) and mRNA. Finally, ribonucleoprotein RNase MRP is not involved in tRNA maturation in plants. Altogether, our results indicate that ribonucleoprotein enzymes have been entirely replaced by proteins for RNase P activity in plants.

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Year:  2012        PMID: 22549728      PMCID: PMC3360558          DOI: 10.1101/gad.189514.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  31 in total

Review 1.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

2.  The NYN domains: novel predicted RNAses with a PIN domain-like fold.

Authors:  Vivek Anantharaman; L Aravind
Journal:  RNA Biol       Date:  2006-01-23       Impact factor: 4.652

Review 3.  A view of RNase P.

Authors:  Sidney Altman
Journal:  Mol Biosyst       Date:  2007-07-25

4.  Efficient virus-induced gene silencing in Arabidopsis.

Authors:  Tessa M Burch-Smith; Michael Schiff; Yule Liu; S P Dinesh-Kumar
Journal:  Plant Physiol       Date:  2006-06-30       Impact factor: 8.340

5.  An ordered Arabidopsis thaliana mitochondrial cDNA library on high-density filters allows rapid systematic analysis of plant gene expression: a pilot study.

Authors:  P Giegé; Z Konthur; G Walter; A Brennicke
Journal:  Plant J       Date:  1998-09       Impact factor: 6.417

Review 6.  The trials and travels of tRNA.

Authors:  S L Wolin; A G Matera
Journal:  Genes Dev       Date:  1999-01-01       Impact factor: 11.361

7.  A G43 to U43 mutation in E. coli tRNAtyrsu3+ which affects processing by RNase P.

Authors:  P J Furdon; C Guerrier-Takada; S Altman
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

Review 8.  Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects.

Authors:  Lien B Lai; Agustín Vioque; Leif A Kirsebom; Venkat Gopalan
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

9.  Processing of a dicistronic tRNA-snoRNA precursor: combined analysis in vitro and in vivo reveals alternate pathways and coupling to assembly of snoRNP.

Authors:  Nicolas Barbezier; Giusy Canino; Julie Rodor; Edouard Jobet; Julio Saez-Vasquez; Anita Marchfelder; Manuel Echeverría
Journal:  Plant Physiol       Date:  2009-05-06       Impact factor: 8.340

10.  Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: t-elements contribute to 5' and 3' end formation.

Authors:  Joachim Forner; Bärbel Weber; Sabine Thuss; Steffen Wildum; Stefan Binder
Journal:  Nucleic Acids Res       Date:  2007-05-08       Impact factor: 16.971

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  58 in total

1.  Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Authors:  Takamasa Teramoto; Kipchumba J Kaitany; Yoshimitsu Kakuta; Makoto Kimura; Carol A Fierke; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

2.  RNase P branches out from RNP to protein: organelle-triggered diversification?

Authors:  Katherine C Goldfarb; Sumit Borah; Thomas R Cech
Journal:  Genes Dev       Date:  2012-05-15       Impact factor: 11.361

3.  Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.

Authors:  Agnes Karasik; Aranganathan Shanmuganathan; Michael J Howard; Carol A Fierke; Markos Koutmos
Journal:  J Mol Biol       Date:  2015-12-03       Impact factor: 5.469

4.  The Functions of Chloroplast Glutamyl-tRNA in Translation and Tetrapyrrole Biosynthesis.

Authors:  Shreya Agrawal; Daniel Karcher; Stephanie Ruf; Ralph Bock
Journal:  Plant Physiol       Date:  2020-02-18       Impact factor: 8.340

5.  Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system.

Authors:  Kabin Xie; Bastian Minkenberg; Yinong Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

6.  Biophysical analysis of Arabidopsis protein-only RNase P alone and in complex with tRNA provides a refined model of tRNA binding.

Authors:  Franziska Pinker; Cédric Schelcher; Pablo Fernandez-Millan; Anthony Gobert; Catherine Birck; Aurélien Thureau; Pierre Roblin; Philippe Giegé; Claude Sauter
Journal:  J Biol Chem       Date:  2017-07-10       Impact factor: 5.157

7.  Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes.

Authors:  Markus Gößringer; Marcus Lechner; Nadia Brillante; Christoph Weber; Walter Rossmanith; Roland K Hartmann
Journal:  Nucleic Acids Res       Date:  2017-07-07       Impact factor: 16.971

8.  Major contribution of transcription initiation to 5'-end formation of mitochondrial steady-state transcripts in maize.

Authors:  Yafeng Zhang; Xiaoyu Huang; Jingyun Zou; Xun Liao; Yujun Liu; Tengxiang Lian; Hai Nian
Journal:  RNA Biol       Date:  2019-01-06       Impact factor: 4.652

9.  Mechanistic Studies Reveal Similar Catalytic Strategies for Phosphodiester Bond Hydrolysis by Protein-only and RNA-dependent Ribonuclease P.

Authors:  Michael J Howard; Bradley P Klemm; Carol A Fierke
Journal:  J Biol Chem       Date:  2015-03-27       Impact factor: 5.157

10.  RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

Authors:  Rikard Fristedt; Lars B Scharff; Cornelia A Clarke; Qin Wang; Chentao Lin; Sabeeha S Merchant; Ralph Bock
Journal:  Plant Physiol       Date:  2013-11-08       Impact factor: 8.340

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