Literature DB >> 22545175

Exposing the Moving Parts of Proteins with NMR Spectroscopy.

J W Peng1.   

Abstract

Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful tool for investigating the dynamics of biomolecules since it provides a description of motion that is comprehensive, site-specific, and relatively non-invasive. In particular, the study of protein dynamics has benefited from sustained methodological advances in NMR that have expanded the scope and time scales of accessible motion. Yet, many of these advances may not be well known to the more general physical chemistry community. Accordingly, this Perspective provides a glimpse of some of the more powerful methods in liquid state NMR that are helping reshape our understanding of functional motions of proteins.

Entities:  

Year:  2012        PMID: 22545175      PMCID: PMC3336369          DOI: 10.1021/jz3002103

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  126 in total

1.  Rapid internal dynamics of BPTI is insensitive to pressure. (15)N spin relaxation at 2 kbar.

Authors:  S Sareth; H Li; H Yamada; C K Woodward; K Akasaka
Journal:  FEBS Lett       Date:  2000-03-17       Impact factor: 4.124

2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  The proteasome antechamber maintains substrates in an unfolded state.

Authors:  Amy M Ruschak; Tomasz L Religa; Sarah Breuer; Susanne Witt; Lewis E Kay
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

Review 4.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

5.  Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation.

Authors:  Nikola Trbovic; Byungchan Kim; Richard A Friesner; Arthur G Palmer
Journal:  Proteins       Date:  2008-05-01

6.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

7.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

8.  Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.

Authors:  Qinghua Wang; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

9.  Evaluation of energetic and dynamic coupling networks in a PDZ domain protein.

Authors:  Ernesto J Fuentes; Steven A Gilmore; Randall V Mauldin; Andrew L Lee
Journal:  J Mol Biol       Date:  2006-09-01       Impact factor: 5.469

10.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

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  6 in total

1.  Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface.

Authors:  Konstantin Berlin; Andrew Longhini; T Kwaku Dayie; David Fushman
Journal:  J Biomol NMR       Date:  2013-10-30       Impact factor: 2.835

Review 2.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 3.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

Authors:  A Joshua Wand
Journal:  Curr Opin Struct Biol       Date:  2012-12-13       Impact factor: 6.809

Review 4.  Revealing the properties of plant defensins through dynamics.

Authors:  Ana Paula Valente; Viviane Silva de Paula; Fabio C L Almeida
Journal:  Molecules       Date:  2013-09-13       Impact factor: 4.411

5.  Direct observation of dynamic protein interactions involving human microtubules using solid-state NMR spectroscopy.

Authors:  Yanzhang Luo; ShengQi Xiang; Peter Jan Hooikaas; Laura van Bezouwen; A S Jijumon; Carsten Janke; Friedrich Förster; Anna Akhmanova; Marc Baldus
Journal:  Nat Commun       Date:  2020-01-02       Impact factor: 14.919

6.  NMR Relaxation Dispersion Reveals Macrocycle Breathing Dynamics in a Cyclodextrin-based Rotaxane.

Authors:  Shannon Stoffel; Qi-Wei Zhang; Dong-Hao Li; Bradley D Smith; Jeffrey W Peng
Journal:  J Am Chem Soc       Date:  2020-04-08       Impact factor: 15.419

  6 in total

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