Literature DB >> 22544187

Evaluation of in-house genotyping assay performance using dried blood spot specimens in the Global World Health Organization laboratory network.

Neil Parkin1, Carmen de Mendoza, Rob Schuurman, Cheryl Jennings, James Bremer, Michael R Jordan, Silvia Bertagnolio.   

Abstract

In resource-limited settings, there is increased demand for human immunodeficiency virus type 1 drug resistance testing. Because preservation of plasma specimens is often not feasible in resource-limited settings, use of dried blood spots (DBSs) is being adopted. We used 2 panels of DBSs for genotyping assay validation and proficiency testing in selected laboratories in the World Health Organization laboratory network in 14 countries. An amplification sensitivity of 1000 copies/mL was achieved by 2 laboratories. Reproducibility and accuracy of nucleotide sequence determination and resistance-associated mutation identification from DBSs was similar to that previously determined for plasma. International shipping at ambient temperature had no significant effect on amplification success. These studies indicate that DBS-based genotyping is equally reproducible and reliable, although slightly less sensitive, compared with plasma.

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Year:  2012        PMID: 22544187      PMCID: PMC3338305          DOI: 10.1093/cid/cir982

Source DB:  PubMed          Journal:  Clin Infect Dis        ISSN: 1058-4838            Impact factor:   9.079


  12 in total

1.  Sources and magnitude of intralaboratory variability in a sequence-based genotypic assay for human immunodeficiency virus type 1 drug resistance.

Authors:  R A Galli; B Sattha; B Wynhoven; M V O'Shaughnessy; P R Harrigan
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

2.  Genotyping external quality assurance in the World Health Organization HIV drug resistance laboratory network during 2007-2010.

Authors:  Neil Parkin; James Bremer; Silvia Bertagnolio
Journal:  Clin Infect Dis       Date:  2012-05       Impact factor: 9.079

3.  The World Health Organization's global strategy for prevention and assessment of HIV drug resistance.

Authors:  Diane E Bennett; Silvia Bertagnolio; Donald Sutherland; Charles F Gilks
Journal:  Antivir Ther       Date:  2008

4.  World Health Organization/HIVResNet Drug Resistance Laboratory Strategy.

Authors:  Silvia Bertagnolio; Inge Derdelinckx; Monica Parker; Joseph Fitzgibbon; Herve Fleury; Martin Peeters; Rob Schuurman; Deenan Pillay; Lynn Morris; Amilcar Tanuri; Guy-Michel Gershy-Damet; John Nkengasong; Charles F Gilks; Donald Sutherland; Paul Sandstrom
Journal:  Antivir Ther       Date:  2008

Review 5.  Update of the drug resistance mutations in HIV-1: December 2010.

Authors:  Victoria A Johnson; Françoise Brun-Vézinet; Bonaventura Clotet; Huldrych F Günthard; Daniel R Kuritzkes; Deenan Pillay; Jonathan M Schapiro; Douglas D Richman
Journal:  Top HIV Med       Date:  2010-12

6.  Model for assessment of proficiency of human immunodeficiency virus type 1 sequencing-based genotypic antiretroviral assays.

Authors:  Diana D Huang; James W Bremer; Donald J Brambilla; Paul E Palumbo; Grace Aldrovandi; Susan Eshleman; Clark Brown; Susan Fiscus; Lisa Frenkel; Hasnah Hamdan; Stephen Hart; Andrea Kovacs; Paul Krogstad; Phillip LaRussa; John Sullivan; Adriana Weinberg; Yu Qi Zhao
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

7.  Cytokine-induced expression of HIV-1 in a chronically infected promonocyte cell line.

Authors:  T M Folks; J Justement; A Kinter; C A Dinarello; A S Fauci
Journal:  Science       Date:  1987-11-06       Impact factor: 47.728

8.  Evaluation of the editing process in human immunodeficiency virus type 1 genotyping.

Authors:  Diana D Huang; Susan H Eshleman; Donald J Brambilla; Paul E Palumbo; James W Bremer
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

Review 9.  Dried fluid spots for HIV type-1 viral load and resistance genotyping: a systematic review.

Authors:  Raph L Hamers; Pieter W Smit; Wendy Stevens; Rob Schuurman; Tobias F Rinke de Wit
Journal:  Antivir Ther       Date:  2009

10.  Evaluation of different RNA extraction methods and storage conditions of dried plasma or blood spots for human immunodeficiency virus type 1 RNA quantification and PCR amplification for drug resistance testing.

Authors:  Marjorie Monleau; Céline Montavon; Christian Laurent; Michel Segondy; Brigitte Montes; Eric Delaporte; François Boillot; Martine Peeters
Journal:  J Clin Microbiol       Date:  2009-02-04       Impact factor: 5.948

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  19 in total

1.  Update on World Health Organization HIV drug resistance prevention and assessment strategy: 2004-2011.

Authors:  M R Jordan; D E Bennett; M A Wainberg; D Havlir; S Hammer; C Yang; L Morris; M Peeters; A M Wensing; N Parkin; J B Nachega; A Phillips; A De Luca; E Geng; A Calmy; E Raizes; P Sandstrom; C P Archibald; J Perriëns; C M McClure; S Y Hong; J H McMahon; N Dedes; D Sutherland; S Bertagnolio
Journal:  Clin Infect Dis       Date:  2012-05       Impact factor: 9.079

2.  Moderate-to-High Levels of Pretreatment HIV Drug Resistance in KwaZulu-Natal Province, South Africa.

Authors:  Benjamin Chimukangara; Ayesha B M Kharsany; Richard J Lessells; Kogieleum Naidoo; Soo-Yon Rhee; Justen Manasa; Tiago Gräf; Lara Lewis; Cherie Cawood; David Khanyile; Karidia Diallo; Kassahun A Ayalew; Robert W Shafer; Gillian Hunt; Deenan Pillay; Salim Karim Abdool; Tulio de Oliveira
Journal:  AIDS Res Hum Retroviruses       Date:  2019-01-07       Impact factor: 2.205

3.  Field evaluation of a broadly sensitive HIV-1 in-house genotyping assay for use with both plasma and dried blood spot specimens in a resource-limited country.

Authors:  Seth Inzaule; Chunfu Yang; Alex Kasembeli; Lillian Nafisa; Jully Okonji; Boaz Oyaro; Richard Lando; Lisa A Mills; Kayla Laserson; Timothy Thomas; John Nkengasong; Clement Zeh
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

4.  Field evaluation of dried blood spots for routine HIV-1 viral load and drug resistance monitoring in patients receiving antiretroviral therapy in Africa and Asia.

Authors:  Marjorie Monleau; Avelin F Aghokeng; Sabrina Eymard-Duvernay; Anoumou Dagnra; Dramane Kania; Nicole Ngo-Giang-Huong; Coumba Touré-Kane; Lien X T Truong; Marie-Laure Chaix; Eric Delaporte; Ahidjo Ayouba; Martine Peeters
Journal:  J Clin Microbiol       Date:  2013-12-11       Impact factor: 5.948

5.  Viral load detection using dried blood spots in a cohort of HIV-1-infected children in Uganda: correlations with clinical and immunological criteria for treatment failure.

Authors:  Paola Costenaro; Rebecca Lundin; Maria Raffaella Petrara; Martina Penazzato; William Massavon; Susan Kizito; Sandra Monica Nabachwa; Maria Nannyonga Musoke; Charles Namisi; Erika Morelli; Davide Bilardi; Antonio Mazza; Marisa Zanchetta; Carlo Giaquinto; Anita De Rossi
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

6.  HIV Resistance and Prevention of Mother-to-Child Transmission Regimen in HIV-Infected Infants in Northern Tanzania.

Authors:  Dorothy E Dow; Werner Schimana; Balthazar M Nyombi; Blandina T Mmbaga; Aisa M Shayo; John A Bartlett; Charles G Massambu; Emmanuel G Kifaro; Elizabeth L Turner; Todd DeMarco; Fangping Cai; Coleen K Cunningham; Ann M Buchanan
Journal:  AIDS Res Hum Retroviruses       Date:  2017-10-05       Impact factor: 2.205

7.  Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country.

Authors:  Karidia Diallo; Wendy E Murillo; Ivette Lorenzana de Rivera; Jan Albert; Zhiyong Zhou; John Nkengasong; Guoqing Zhang; Jennifer F Sabatier; Chunfu Yang
Journal:  Int J Mol Epidemiol Genet       Date:  2012-02-28

Review 8.  Implementing HIV-1 genotypic resistance testing in antiretroviral therapy programs in Africa: needs, opportunities, and challenges.

Authors:  Richard J Lessells; Ava Avalos; Tulio de Oliveira
Journal:  AIDS Rev       Date:  2013 Oct-Dec       Impact factor: 2.500

9.  Field study of dried blood spot specimens for HIV-1 drug resistance genotyping.

Authors:  C M Parry; N Parkin; K Diallo; S Mwebaza; R Batamwita; J DeVos; N Bbosa; F Lyagoba; B Magambo; M R Jordan; R Downing; G Zhang; P Kaleebu; C Yang; S Bertagnolio
Journal:  J Clin Microbiol       Date:  2014-05-28       Impact factor: 5.948

10.  Development, validation and clinical evaluation of a low cost in-house HIV-1 drug resistance genotyping assay for Indian patients.

Authors:  Arpan Acharya; Salil Vaniawala; Parth Shah; Rabindra Nath Misra; Minal Wani; Pratap N Mukhopadhyaya
Journal:  PLoS One       Date:  2014-08-26       Impact factor: 3.240

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