Literature DB >> 22535494

Retrogenes moved out of the z chromosome in the silkworm.

Jun Wang1, Manyuan Long, Maria D Vibranovski.   

Abstract

Previous studies on organisms with well-differentiated X and Y chromosomes, such as Drosophila and mammals, consistently detected an excess of genes moving out of the X chromosome and gaining testis-biased expression. Several selective evolutionary mechanisms were shown to be associated with this nonrandom gene traffic, which contributed to the evolution of the X chromosome and autosomes. If selection drives gene traffic, such traffic should also exist in species with Z and W chromosomes, where the females are the heterogametic sex. However, no previous studies on gene traffic in species with female heterogamety have found any nonrandom chromosomal gene movement. Here, we report an excess of retrogenes moving out of the Z chromosome in an organism with the ZW sex determination system, Bombyx mori. In addition, we showed that those "out of Z" retrogenes tended to have ovary-biased expression, which is consistent with the pattern of non-retrogene traffic recently reported in birds and symmetrical to the retrogene movement in mammals and fruit flies out of the X chromosome evolving testis functions. These properties of gene traffic in the ZW system suggest a general role for the heterogamety of sex chromosomes in determining the chromosomal locations and the evolution of sex-biased genes.

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Year:  2012        PMID: 22535494     DOI: 10.1007/s00239-012-9499-y

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  58 in total

1.  An abundance of X-linked genes expressed in spermatogonia.

Authors:  P J Wang; J R McCarrey; F Yang; D C Page
Journal:  Nat Genet       Date:  2001-04       Impact factor: 38.330

Review 2.  Sexual antagonism and X inactivation--the SAXI hypothesis.

Authors:  Chung I Wu; Eugene Yujun Xu
Journal:  Trends Genet       Date:  2003-05       Impact factor: 11.639

3.  Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

Authors:  Dean A Baker; Steven Russell
Journal:  Genetics       Date:  2011-09-02       Impact factor: 4.562

4.  Nuclear chromosome dynamics in the Drosophila male germ line contribute to the nonrandom genomic distribution of retrogenes.

Authors:  Carlos Díaz-Castillo; José M Ranz
Journal:  Mol Biol Evol       Date:  2012-03-16       Impact factor: 16.240

5.  Age-dependent chromosomal distribution of male-biased genes in Drosophila.

Authors:  Yong E Zhang; Maria D Vibranovski; Benjamin H Krinsky; Manyuan Long
Journal:  Genome Res       Date:  2010-08-26       Impact factor: 9.043

6.  Demasculinization of X chromosomes in the Drosophila genus.

Authors:  David Sturgill; Yu Zhang; Michael Parisi; Brian Oliver
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

7.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

Review 8.  XY and ZW: is meiotic sex chromosome inactivation the rule in evolution?

Authors:  Satoshi H Namekawa; Jeannie T Lee
Journal:  PLoS Genet       Date:  2009-05-22       Impact factor: 5.917

9.  The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression.

Authors:  Jacob L Mueller; Shantha K Mahadevaiah; Peter J Park; Peter E Warburton; David C Page; James M A Turner
Journal:  Nat Genet       Date:  2008-05-04       Impact factor: 38.330

10.  Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes.

Authors:  Lukasz Potrzebowski; Nicolas Vinckenbosch; Ana Claudia Marques; Frédéric Chalmel; Bernard Jégou; Henrik Kaessmann
Journal:  PLoS Biol       Date:  2008-04-01       Impact factor: 8.029

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  17 in total

Review 1.  New gene evolution: little did we know.

Authors:  Manyuan Long; Nicholas W VanKuren; Sidi Chen; Maria D Vibranovski
Journal:  Annu Rev Genet       Date:  2013-09-13       Impact factor: 16.830

Review 2.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

3.  Support for faster and more adaptive Z chromosome evolution in two divergent lepidopteran lineages.

Authors:  Andrew J Mongue; Megan E Hansen; James R Walters
Journal:  Evolution       Date:  2021-09-08       Impact factor: 4.171

4.  The Rhesus macaque (Macaca mulatta) sperm proteome.

Authors:  Sheri Skerget; Matthew Rosenow; Ashoka Polpitiya; Konstantinos Petritis; Steve Dorus; Timothy L Karr
Journal:  Mol Cell Proteomics       Date:  2013-07-01       Impact factor: 5.911

5.  Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes.

Authors:  Maria D Vibranovski; Yong E Zhang; Claus Kemkemer; Nicholas W VanKuren; Hedibert F Lopes; Timothy L Karr; Manyuan Long
Journal:  BMC Evol Biol       Date:  2012-09-05       Impact factor: 3.260

Review 6.  New genes as drivers of phenotypic evolution.

Authors:  Sidi Chen; Benjamin H Krinsky; Manyuan Long
Journal:  Nat Rev Genet       Date:  2013-09       Impact factor: 53.242

7.  Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.

Authors:  Yi Liao; Xuemei Zhang; Bo Li; Tieyan Liu; Jinfeng Chen; Zetao Bai; Meijiao Wang; Jinfeng Shi; Jason G Walling; Rod A Wing; Jiming Jiang; Mingsheng Chen
Journal:  Plant Cell       Date:  2018-07-02       Impact factor: 11.277

8.  High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences.

Authors:  Chengjun Zhang; Jun Wang; Nicholas C Marowsky; Manyuan Long; Rod A Wing; Chuanzhu Fan
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

9.  Evolution of three parent genes and their retrogene copies in Drosophila species.

Authors:  Ryan S O'Neill; Denise V Clark
Journal:  Int J Evol Biol       Date:  2013-06-05

10.  Females and males contribute in opposite ways to the evolution of gene order in Drosophila.

Authors:  Carlos Díaz-Castillo
Journal:  PLoS One       Date:  2013-05-16       Impact factor: 3.240

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