Literature DB >> 24050177

New gene evolution: little did we know.

Manyuan Long1, Nicholas W VanKuren, Sidi Chen, Maria D Vibranovski.   

Abstract

Genes are perpetually added to and deleted from genomes during evolution. Thus, it is important to understand how new genes are formed and how they evolve to be critical components of the genetic systems that determine the biological diversity of life. Two decades of effort have shed light on the process of new gene origination and have contributed to an emerging comprehensive picture of how new genes are added to genomes, ranging from the mechanisms that generate new gene structures to the presence of new genes in different organisms to the rates and patterns of new gene origination and the roles of new genes in phenotypic evolution. We review each of these aspects of new gene evolution, summarizing the main evidence for the origination and importance of new genes in evolution. We highlight findings showing that new genes rapidly change existing genetic systems that govern various molecular, cellular, and phenotypic functions.

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Year:  2013        PMID: 24050177      PMCID: PMC4281893          DOI: 10.1146/annurev-genet-111212-133301

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  159 in total

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Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

Review 2.  Structural variation in the human genome.

Authors:  Lars Feuk; Andrew R Carson; Stephen W Scherer
Journal:  Nat Rev Genet       Date:  2006-02       Impact factor: 53.242

3.  Recent de novo origin of human protein-coding genes.

Authors:  David G Knowles; Aoife McLysaght
Journal:  Genome Res       Date:  2009-09-02       Impact factor: 9.043

Review 4.  Retroposons--seeds of evolution.

Authors:  J Brosius
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

5.  Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

Authors:  Dean A Baker; Steven Russell
Journal:  Genetics       Date:  2011-09-02       Impact factor: 4.562

6.  Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

Authors:  Mia T Levine; Corbin D Jones; Andrew D Kern; Heather A Lindfors; David J Begun
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-15       Impact factor: 11.205

7.  A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Authors:  Dan Li; Yang Dong; Yu Jiang; Huifeng Jiang; Jing Cai; Wen Wang
Journal:  Cell Res       Date:  2010-03-02       Impact factor: 25.617

8.  Mutational bias shaping fly copy number variation: implications for genome evolution.

Authors:  Margarida M Cardoso-Moreira; Manyuan Long
Journal:  Trends Genet       Date:  2010-04-21       Impact factor: 11.639

9.  Demasculinization of X chromosomes in the Drosophila genus.

Authors:  David Sturgill; Yu Zhang; Michael Parisi; Brian Oliver
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

10.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

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  96 in total

1.  Model-Based Detection of Whole-Genome Duplications in a Phylogeny.

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Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

2.  Evolution of the rapidly mutating human salivary agglutinin gene (DMBT1) and population subsistence strategy.

Authors:  Shamik Polley; Sandra Louzada; Diego Forni; Manuela Sironi; Theodosius Balaskas; David S Hains; Fengtang Yang; Edward J Hollox
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

3.  CHRFAM7A: a human-specific α7-nicotinic acetylcholine receptor gene shows differential responsiveness of human intestinal epithelial cells to LPS.

Authors:  Xitong Dang; Brian P Eliceiri; Andrew Baird; Todd W Costantini
Journal:  FASEB J       Date:  2015-02-13       Impact factor: 5.191

4.  The Co-4 locus on chromosome Pv08 contains a unique cluster of 18 COK-4 genes and is regulated by immune response in common bean.

Authors:  Paula Rodrigues Oblessuc; Camila Francisco; Maeli Melotto
Journal:  Theor Appl Genet       Date:  2015-03-25       Impact factor: 5.699

5.  Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes.

Authors:  Huiwu Tang; Xingmei Zheng; Chuliang Li; Xianrong Xie; Yuanling Chen; Letian Chen; Xiucai Zhao; Huiqi Zheng; Jiajian Zhou; Shan Ye; Jingxin Guo; Yao-Guang Liu
Journal:  Cell Res       Date:  2016-10-11       Impact factor: 25.617

6.  Functional heritage: the evolution of chimeric RNA into a gene.

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Journal:  RNA Biol       Date:  2019-09-29       Impact factor: 4.652

Review 7.  Evolution to the rescue: using comparative genomics to understand long non-coding RNAs.

Authors:  Igor Ulitsky
Journal:  Nat Rev Genet       Date:  2016-08-30       Impact factor: 53.242

8.  Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes.

Authors:  Jun Wang; Feng Tao; Nicholas C Marowsky; Chuanzhu Fan
Journal:  Plant Physiol       Date:  2016-08-02       Impact factor: 8.340

Review 9.  Molecular and cellular evolution of corticogenesis in amniotes.

Authors:  Adrián Cárdenas; Víctor Borrell
Journal:  Cell Mol Life Sci       Date:  2019-09-28       Impact factor: 9.261

10.  Rapid Evolution of Gained Essential Developmental Functions of a Young Gene via Interactions with Other Essential Genes.

Authors:  Yuh Chwen G Lee; Iuri M Ventura; Gavin R Rice; Dong-Yuan Chen; Serafin U Colmenares; Manyuan Long
Journal:  Mol Biol Evol       Date:  2019-10-01       Impact factor: 16.240

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