Literature DB >> 23949544

New genes as drivers of phenotypic evolution.

Sidi Chen1, Benjamin H Krinsky, Manyuan Long.   

Abstract

During the course of evolution, genomes acquire novel genetic elements as sources of functional and phenotypic diversity, including new genes that originated in recent evolution. In the past few years, substantial progress has been made in understanding the evolution and phenotypic effects of new genes. In particular, an emerging picture is that new genes, despite being present in the genomes of only a subset of species, can rapidly evolve indispensable roles in fundamental biological processes, including development, reproduction, brain function and behaviour. The molecular underpinnings of how new genes can develop these roles are starting to be characterized. These recent discoveries yield fresh insights into our broad understanding of biological diversity at refined resolution.

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Year:  2013        PMID: 23949544      PMCID: PMC4236023          DOI: 10.1038/nrg3521

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  125 in total

1.  Molecular evidence for the early evolution of photosynthesis.

Authors:  J Xiong; W M Fischer; K Inoue; M Nakahara; C E Bauer
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

Review 2.  Sexual antagonism and X inactivation--the SAXI hypothesis.

Authors:  Chung I Wu; Eugene Yujun Xu
Journal:  Trends Genet       Date:  2003-05       Impact factor: 11.639

3.  Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

Authors:  Dean A Baker; Steven Russell
Journal:  Genetics       Date:  2011-09-02       Impact factor: 4.562

4.  Maternal activation of gap genes in the hover fly Episyrphus.

Authors:  Steffen Lemke; Stephanie E Busch; Dionysios A Antonopoulos; Folker Meyer; Marc H Domanus; Urs Schmidt-Ott
Journal:  Development       Date:  2010-05       Impact factor: 6.868

5.  A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Authors:  Dan Li; Yang Dong; Yu Jiang; Huifeng Jiang; Jing Cai; Wen Wang
Journal:  Cell Res       Date:  2010-03-02       Impact factor: 25.617

6.  Demasculinization of X chromosomes in the Drosophila genus.

Authors:  David Sturgill; Yu Zhang; Michael Parisi; Brian Oliver
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

7.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

8.  Canalization of segmentation and its evolution in Drosophila.

Authors:  Susan E Lott; Martin Kreitman; Arnar Palsson; Elena Alekseeva; Michael Z Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-14       Impact factor: 11.205

9.  Paucity of genes on the Drosophila X chromosome showing male-biased expression.

Authors:  Michael Parisi; Rachel Nuttall; Daniel Naiman; Gerard Bouffard; James Malley; Justen Andrews; Scott Eastman; Brian Oliver
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

10.  Bicoid occurrence and Bicoid-dependent hunchback regulation in lower cyclorrhaphan flies.

Authors:  Steffen Lemke; Michael Stauber; Philip J Shaw; Ab Matteen Rafiqi; Alexander Prell; Urs Schmidt-Ott
Journal:  Evol Dev       Date:  2008 Jul-Aug       Impact factor: 1.930

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  134 in total

Review 1.  Nervous systems and scenarios for the invertebrate-to-vertebrate transition.

Authors:  Nicholas D Holland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-01-05       Impact factor: 6.237

2.  The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.

Authors:  Cecilia Da Silva; Gianpiero Zamperin; Alberto Ferrarini; Andrea Minio; Alessandra Dal Molin; Luca Venturini; Genny Buson; Paola Tononi; Carla Avanzato; Elisa Zago; Eduardo Boido; Eduardo Dellacassa; Carina Gaggero; Mario Pezzotti; Francisco Carrau; Massimo Delledonne
Journal:  Plant Cell       Date:  2013-12-06       Impact factor: 11.277

3.  ORFanFinder: automated identification of taxonomically restricted orphan genes.

Authors:  Alex Ekstrom; Yanbin Yin
Journal:  Bioinformatics       Date:  2016-03-07       Impact factor: 6.937

4.  Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes.

Authors:  Jun Wang; Feng Tao; Nicholas C Marowsky; Chuanzhu Fan
Journal:  Plant Physiol       Date:  2016-08-02       Impact factor: 8.340

5.  Evolutionary transcriptomics of metazoan biphasic life cycle supports a single intercalation origin of metazoan larvae.

Authors:  Jing Wang; Lingling Zhang; Shanshan Lian; Zhenkui Qin; Xuan Zhu; Xiaoting Dai; Zekun Huang; Caihuan Ke; Zunchun Zhou; Jiankai Wei; Pingping Liu; Naina Hu; Qifan Zeng; Bo Dong; Ying Dong; Dexu Kong; Zhifeng Zhang; Sinuo Liu; Yu Xia; Yangping Li; Liang Zhao; Qiang Xing; Xiaoting Huang; Xiaoli Hu; Zhenmin Bao; Shi Wang
Journal:  Nat Ecol Evol       Date:  2020-03-16       Impact factor: 15.460

Review 6.  Molecular and cellular evolution of corticogenesis in amniotes.

Authors:  Adrián Cárdenas; Víctor Borrell
Journal:  Cell Mol Life Sci       Date:  2019-09-28       Impact factor: 9.261

7.  Emergence of a Novel Chimeric Gene Underlying Grain Number in Rice.

Authors:  Hao Chen; Yanyan Tang; Jianfeng Liu; Lubin Tan; Jiahuan Jiang; Mumu Wang; Zuofeng Zhu; Xianyou Sun; Chuanqing Sun
Journal:  Genetics       Date:  2016-12-16       Impact factor: 4.562

8.  Rapid Evolution of Gained Essential Developmental Functions of a Young Gene via Interactions with Other Essential Genes.

Authors:  Yuh Chwen G Lee; Iuri M Ventura; Gavin R Rice; Dong-Yuan Chen; Serafin U Colmenares; Manyuan Long
Journal:  Mol Biol Evol       Date:  2019-10-01       Impact factor: 16.240

Review 9.  Experimental Evolution of Innovation and Novelty.

Authors:  Rees Kassen
Journal:  Trends Ecol Evol       Date:  2019-04-23       Impact factor: 17.712

10.  Evolution of gene structural complexity: an alternative-splicing-based model accounts for intron-containing retrogenes.

Authors:  Chengjun Zhang; Andrea R Gschwend; Yidan Ouyang; Manyuan Long
Journal:  Plant Physiol       Date:  2014-02-11       Impact factor: 8.340

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