Literature DB >> 22528483

Identification of a human trans-3-hydroxy-L-proline dehydratase, the first characterized member of a novel family of proline racemase-like enzymes.

Wouter F Visser1, Nanda M Verhoeven-Duif, Tom J de Koning.   

Abstract

A family of eukaryotic proline racemase-like genes has recently been identified. Several members of this family have been well characterized and are known to catalyze the racemization of free proline or trans-4-hydroxyproline. However, the majority of eukaryotic proline racemase-like proteins, including a human protein called C14orf149, lack a specific cysteine residue that is known to be critical for racemase activity. Instead, these proteins invariably contain a threonine residue at this position. The function of these enzymes has remained unresolved until now. In this study, we demonstrate that three enzymes of this type, including human C14orf149, catalyze the dehydration of trans-3-hydroxy-L-proline to Δ(1)-pyrroline-2-carboxylate (Pyr2C). These are the first enzymes of this subclass of proline racemase-like genes for which the enzymatic activity has been resolved. C14orf149 is also the first human enzyme that acts on trans-3-hydroxy-L-proline. Interestingly, a mutant enzyme in which the threonine in the active site is mutated back into cysteine regained 3-hydroxyproline epimerase activity. This result suggests that the enzymatic activity of these enzymes is dictated by a single residue. Presumably, human C14orf149 serves to degrade trans-3-hydroxy-L-proline from the diet and originating from the degradation of proteins that contain this amino acid, such as collagen IV, which is an important structural component of basement membrane.

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Year:  2012        PMID: 22528483      PMCID: PMC3381129          DOI: 10.1074/jbc.M112.363218

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

2.  Association analyses confirming a susceptibility locus for intracranial aneurysm at chromosome 14q23.

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Journal:  J Hum Genet       Date:  2008-02-08       Impact factor: 3.172

Review 3.  The importance of proline residues in the structure, stability and susceptibility to proteolytic degradation of collagens.

Authors:  Stephen M Krane
Journal:  Amino Acids       Date:  2008-04-23       Impact factor: 3.520

4.  A sensitive and simple ultra-high-performance-liquid chromatography-tandem mass spectrometry based method for the quantification of D-amino acids in body fluids.

Authors:  Wouter F Visser; Nanda M Verhoeven-Duif; Roel Ophoff; Steven Bakker; Leo W Klomp; Ruud Berger; Tom J de Koning
Journal:  J Chromatogr A       Date:  2011-08-03       Impact factor: 4.759

5.  Aspartate racemase, generating neuronal D-aspartate, regulates adult neurogenesis.

Authors:  Paul M Kim; Xin Duan; Alex S Huang; Cindy Y Liu; Guo-li Ming; Hongjun Song; Solomon H Snyder
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

6.  Gas chromatographic quantification of free D-amino acids in higher vertebrates.

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Journal:  Biomed Chromatogr       Date:  2005-07       Impact factor: 1.902

7.  Reaction mechanism and structure of the active site of proline racemase.

Authors:  G Rudnick; R H Abeles
Journal:  Biochemistry       Date:  1975-10-07       Impact factor: 3.162

8.  Biochemical characterization of proline racemases from the human protozoan parasite Trypanosoma cruzi and definition of putative protein signatures.

Authors:  Natalie Chamond; Christophe Grégoire; Nicolas Coatnoan; Catherine Rougeot; Lucio Holanda Freitas-Junior; José Franco da Silveira; Wim M Degrave; Paola Minoprio
Journal:  J Biol Chem       Date:  2003-05-02       Impact factor: 5.157

9.  The presence of free D-serine, D-alanine and D-proline in human plasma.

Authors:  Y Nagata; R Masui; T Akino
Journal:  Experientia       Date:  1992-10-15

10.  L-Pipecolate formation in the mammalian brain. Regional distribution of delta1-pyrroline-2-carboxylate reductase activity.

Authors:  G Garweg; D von Rehren; U Hintze
Journal:  J Neurochem       Date:  1980-09       Impact factor: 5.372

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  15 in total

1.  Insights into Enzyme Catalysis and Thyroid Hormone Regulation of Cerebral Ketimine Reductase/μ-Crystallin Under Physiological Conditions.

Authors:  André Hallen; Arthur J L Cooper; Joanne F Jamie; Peter Karuso
Journal:  Neurochem Res       Date:  2015-05-01       Impact factor: 3.996

2.  Characterization of a Novel cis-3-Hydroxy-l-Proline Dehydratase and a trans-3-Hydroxy-l-Proline Dehydratase from Bacteria.

Authors:  Seiya Watanabe; Fumiyasu Fukumori; Mao Miyazaki; Shinya Tagami; Yasuo Watanabe
Journal:  J Bacteriol       Date:  2017-07-25       Impact factor: 3.490

Review 3.  Imine reductases: a comparison of glutamate dehydrogenase to ketimine reductases in the brain.

Authors:  André Hallen; Joanne F Jamie; Arthur J L Cooper
Journal:  Neurochem Res       Date:  2013-01-12       Impact factor: 3.996

4.  The Clostridium difficile proline racemase is not essential for early logarithmic growth and infection.

Authors:  Xiaoqian Wu; Julian G Hurdle
Journal:  Can J Microbiol       Date:  2014-03-06       Impact factor: 2.419

5.  L-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.

Authors:  Siyun Chen; Catharine E White; George C diCenzo; Ye Zhang; Peter J Stogios; Alexei Savchenko; Turlough M Finan
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6.  The morphometry of left cuneus mediating the genetic regulation on working memory.

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Journal:  Hum Brain Mapp       Date:  2021-05-03       Impact factor: 5.038

7.  Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences.

Authors:  Zuleima C Caballero; Andre G Costa-Martins; Robson C Ferreira; João M P Alves; Myrna G Serrano; Erney P Camargo; Gregory A Buck; Paola Minoprio; Marta M G Teixeira
Journal:  Parasit Vectors       Date:  2015-04-12       Impact factor: 3.876

8.  Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks.

Authors:  Suwen Zhao; Ayano Sakai; Xinshuai Zhang; Matthew W Vetting; Ritesh Kumar; Brandan Hillerich; Brian San Francisco; Jose Solbiati; Adam Steves; Shoshana Brown; Eyal Akiva; Alan Barber; Ronald D Seidel; Patricia C Babbitt; Steven C Almo; John A Gerlt; Matthew P Jacobson
Journal:  Elife       Date:  2014-06-30       Impact factor: 8.140

Review 9.  Hydroxyproline in animal metabolism, nutrition, and cell signaling.

Authors:  Shengdi Hu; Wenliang He; Guoyao Wu
Journal:  Amino Acids       Date:  2021-08-03       Impact factor: 3.520

10.  Identification and characterization of trans-3-hydroxy-l-proline dehydratase and Δ(1)-pyrroline-2-carboxylate reductase involved in trans-3-hydroxy-l-proline metabolism of bacteria.

Authors:  Seiya Watanabe; Yoshiaki Tanimoto; Seiji Yamauchi; Yuzuru Tozawa; Shigeki Sawayama; Yasuo Watanabe
Journal:  FEBS Open Bio       Date:  2014-02-26       Impact factor: 2.693

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