Literature DB >> 22525754

Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase.

Eugenio De la Mora1, Janet E Lovett, Christopher F Blanford, Elspeth F Garman, Brenda Valderrama, Enrique Rudino-Pinera.   

Abstract

X-ray radiation induces two main effects at metal centres contained in protein crystals: radiation-induced reduction and radiolysis and a resulting decrease in metal occupancy. In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal-to-ligand distances change depending on the oxidation states of the Cu atoms, suggesting that these alterations are catalytically relevant to the binding, activation and reduction of O(2). In this work, the X-ray-determined three-dimensional structure of laccase from the basidiomycete Coriolopsis gallica (Cg L), a high catalytic potential BMCO, is described. By combining spectroscopic techniques (UV-Vis, EPR and XAS) and X-ray crystallography, structural changes at and around the active copper centres were related to pH and absorbed X-ray dose (energy deposited per unit mass). Depletion of two of the four active Cu atoms as well as low occupancies of the remaining Cu atoms, together with different conformations of the metal centres, were observed at both acidic pH and high absorbed dose, correlating with more reduced states of the active coppers. These observations provide additional evidence to support the role of flexibility of copper sites during O(2) reduction. This study supports previous observations indicating that interpretations regarding redox state and metal coordination need to take radiation effects explicitly into account.
© 2012 International Union of Crystallography

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22525754      PMCID: PMC3335286          DOI: 10.1107/S0907444912005343

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  76 in total

Review 1.  Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

Authors:  Peter O'Neill; David L Stevens; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  The determination of cuprous ion in copper proteins.

Authors:  G FELSENFELD
Journal:  Arch Biochem Biophys       Date:  1960-04       Impact factor: 4.013

Review 3.  Laccases and their applications: a patent review.

Authors:  Adinarayana Kunamneni; Francisco J Plou; Antonio Ballesteros; Miguel Alcalde
Journal:  Recent Pat Biotechnol       Date:  2008

Review 4.  Radiation damage in macromolecular cryocrystallography.

Authors:  Raimond B G Ravelli; Elspeth F Garman
Journal:  Curr Opin Struct Biol       Date:  2006-08-30       Impact factor: 6.809

5.  Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers.

Authors:  Klaus Piontek; Matteo Antorini; Thomas Choinowski
Journal:  J Biol Chem       Date:  2002-08-05       Impact factor: 5.157

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 7.  Multicopper oxidases: a workshop on copper coordination chemistry, electron transfer, and metallophysiology.

Authors:  Daniel J Kosman
Journal:  J Biol Inorg Chem       Date:  2009-10-09       Impact factor: 3.358

8.  The structure of Rigidoporus lignosus Laccase containing a full complement of copper ions, reveals an asymmetrical arrangement for the T3 copper pair.

Authors:  Silvia Garavaglia; Maria Teresa Cambria; Marco Miglio; Santa Ragusa; Vito Iacobazzi; Ferdinando Palmieri; Chiara D'Ambrosio; Andrea Scaloni; Menico Rizzi
Journal:  J Mol Biol       Date:  2004-10-01       Impact factor: 5.469

9.  Colouring cryo-cooled crystals: online microspectrophotometry.

Authors:  John McGeehan; Raimond B G Ravelli; James W Murray; Robin Leslie Owen; Florent Cipriani; Sean McSweeney; Martin Weik; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

10.  Crystal structure of a blue laccase from Lentinus tigrinus: evidences for intermediates in the molecular oxygen reductive splitting by multicopper oxidases.

Authors:  Marta Ferraroni; Nina M Myasoedova; Vadim Schmatchenko; Alexey A Leontievsky; Ludmila A Golovleva; Andrea Scozzafava; Fabrizio Briganti
Journal:  BMC Struct Biol       Date:  2007-09-26
View more
  13 in total

Review 1.  Spectroscopic and computational characterization of laccases and their substrate radical intermediates.

Authors:  Rebecca Pogni; Maria Camilla Baratto; Adalgisa Sinicropi; Riccardo Basosi
Journal:  Cell Mol Life Sci       Date:  2015-01-17       Impact factor: 9.261

Review 2.  Three-dimensional structures of laccases.

Authors:  N Hakulinen; J Rouvinen
Journal:  Cell Mol Life Sci       Date:  2015-01-14       Impact factor: 9.261

3.  X-ray-induced catalytic active-site reduction of a multicopper oxidase: structural insights into the proton-relay mechanism and O2-reduction states.

Authors:  Hugo Serrano-Posada; Sara Centeno-Leija; Sonia Patricia Rojas-Trejo; Claudia Rodríguez-Almazán; Vivian Stojanoff; Enrique Rudiño-Piñera
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-11-26

4.  Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase.

Authors:  Takeshi Murakawa; Mamoru Suzuki; Toshi Arima; Michihiro Sugahara; Tomoyuki Tanaka; Rie Tanaka; So Iwata; Eriko Nango; Kensuke Tono; Hideyuki Hayashi; Kenji Fukui; Takato Yano; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-09-21       Impact factor: 1.072

5.  Structural and functional characterization of a cytochrome P450 2B4 F429H mutant with an axial thiolate-histidine hydrogen bond.

Authors:  Yuting Yang; Haoming Zhang; Dandamudi Usharani; Weishu Bu; Sangchoul Im; Michael Tarasev; Freeborn Rwere; Naw May Pearl; Jennifer Meagher; Cuthbert Sun; Jeanne Stuckey; Sason Shaik; Lucy Waskell
Journal:  Biochemistry       Date:  2014-07-31       Impact factor: 3.162

6.  In crystallo optical spectroscopy (icOS) as a complementary tool on the macromolecular crystallography beamlines of the ESRF.

Authors:  David von Stetten; Thierry Giraud; Philippe Carpentier; Franc Sever; Maxime Terrien; Fabien Dobias; Douglas H Juers; David Flot; Christoph Mueller-Dieckmann; Gordon A Leonard; Daniele de Sanctis; Antoine Royant
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

7.  Effect of the L499M mutation of the ascomycetous Botrytis aclada laccase on redox potential and catalytic properties.

Authors:  Evgeny Osipov; Konstantin Polyakov; Roman Kittl; Sergey Shleev; Pavel Dorovatovsky; Tamara Tikhonova; Stephan Hann; Roland Ludwig; Vladimir Popov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

8.  Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal.

Authors:  Sam Horrell; Svetlana V Antonyuk; Robert R Eady; S Samar Hasnain; Michael A Hough; Richard W Strange
Journal:  IUCrJ       Date:  2016-06-15       Impact factor: 4.769

9.  A comparative structural analysis of the surface properties of asco-laccases.

Authors:  Heidi A Ernst; Lise J Jørgensen; Christian Bukh; Klaus Piontek; Dietmar A Plattner; Lars H Østergaard; Sine Larsen; Morten J Bjerrum
Journal:  PLoS One       Date:  2018-11-05       Impact factor: 3.240

10.  Incorporation of copper ions into crystals of T2 copper-depleted laccase from Botrytis aclada.

Authors:  E M Osipov; K M Polyakov; T V Tikhonova; R Kittl; P V Dorovatovskii; S V Shleev; V O Popov; R Ludwig
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-11-18       Impact factor: 1.056

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.