| Literature DB >> 22519962 |
Amanda P Pedroso1, Regina L H Watanabe, Kelse T Albuquerque, Mônica M Telles, Maria C C Andrade, Juliana D Perez, Maísa M Sakata, Mariana L Lima, Debora Estadella, Cláudia M O Nascimento, Lila M Oyama, José C Rosa, Dulce E Casarini, Eliane B Ribeiro.
Abstract
BACKGROUND: The hypothalamus plays a pivotal role in numerous mechanisms highly relevant to the maintenance of body homeostasis, such as the control of food intake and energy expenditure. Impairment of these mechanisms has been associated with the metabolic disturbances involved in the pathogenesis of obesity. Since rodent species constitute important models for metabolism studies and the rat hypothalamus is poorly characterized by proteomic strategies, we performed experiments aimed at constructing a two-dimensional gel electrophoresis (2-DE) profile of rat hypothalamus proteins.Entities:
Year: 2012 PMID: 22519962 PMCID: PMC3441799 DOI: 10.1186/1477-5956-10-26
Source DB: PubMed Journal: Proteome Sci ISSN: 1477-5956 Impact factor: 2.480
Sample preparation procedures and buffers composition
| | | |||||
| Tris–HCl pH 7,6 | 40 mM | - | - | - | - | |
| Tris | - | 20 mM | - | - | - | |
| Urea | - | 9 M | 7 M | 7 M | 7 M | |
| Tiourea | - | - | 2 M | 2 M | 2 M | |
| EDTA | - | 1 mM | - | - | - | |
| CHAPS (w/v) | 2% | 4% | 4% | 4% | 4% | |
| Triton X-100 (v/v) | - | - | 0.5% | 0.5% | 0.5% | |
| DTT | - | 10 mM | - | 100 mM | - | |
| ASB-14 (w/v) | - | - | - | - | 2% | |
| | No | No | Yes | Yes | Yes | |
| Tiourea | 2 M | - | | 2 M | | |
| Urea | 7 M | 9 M | | 7 M | | |
| DTT | 50 mM | 18 mM | | 100 mM | | |
| CHAPS (w/v) | 2% | 2% | | 4% | | |
| Triton x-100 (v/v) | - | - | | 0.5% | | |
| IPG Buffer pH 3-10 (v/v) | 0.5% | 2% | | 0.2% | | |
| Bromofenol blue | traces | traces | traces |
Figure 1Representative 2-D gel of rat hypothalamus stained with Coomassie Blue G-250. The proteins identified are designated with their Swiss-Prot accession numbers. Multiple lines originating from the same Accession Number indicate that the same protein was identified in different spots. Multiple lines originating from the same spot indicate that more than one protein was identified in that spot. Detailed information about the proteins are found in Table 2.
Identified proteins from the rat hypothalamus
| G3P_RAT/P04797 | Glyceraldehyde-3-phosphate dehydrogenase | 36090/ | 4(4)/ | 274 | M.VKVGVNGFGR.I | 47 |
| 4(2)/ | 108 | M.VKVGVNGFGR.I | 46 | |||
| 3(2)/ | 106 | M.VKVGVNGFGR.I | 38 | |||
| SSDH_RAT/P51650 | Succinate-semialdehyde dehydrogenase, mitochondrial | 56723/ | 1(1)/ | 44 | R.AAYDAFSSWK.E | 44 |
| DHE3_RAT/P10860 | Glutamate dehydrogenase 1, mitochondrial | 61719/ | 4(3)/ | 204 | K.MVEGFFDR.G + Oxidation (M) | 17 |
| 5(5)/ | 216 | R.DDGSWEVIEGYR.A | 57 | |||
| AK1A1_RAT/P51635 | Alcohol dehydrogenase [NADP+] | 36711/ | 2(0)/ | 29 | R.DAGHPLYPFNDPY.- | 20 |
| CN37_RAT/P13233 | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 47638/ | 4(3)/ | 169 | K.AIFTGYYGK.G | 51 |
| 4(4)/ | 175 | K.AIFTGYYGK.G | 69 | |||
| DPYL2_RAT/P47942 | Dihydropyrimidinase-related protein 2 | 62638/ | 5(4)/ | 160 | R.KPFPDFVYKR.I | 20 |
| 3(1)/ | 67 | K.VFNLYPR.K | 19 | |||
| 4(3)/ | 164 | K.VFNLYPR.K | 37 | |||
| DPYL5_RAT/Q9JHU0 | Dihydropyrimidinase-related protein 5 | 62071/ | 4(0)/ | 45 | K.IPHGVSGVQDR.M | 4 |
| UCHL1_RAT/Q00981 | Ubiquitin carboxyl-terminal hydrolase isozyme L1 | 25165/ | 4(2)/ | 157 | K.QFLSETEK.L | 52 |
| 2(1)/ | 52 | K.QFLSETEKLSPEDR.A | 38 | |||
| ATPG_RAT/P35435 | ATP synthase subunit gamma, mitochondrial | 30229/ | 2(1)/ | 73 | R.VYGTGSLALYEK.A | 63 |
| VATE1_RAT/Q6PCU2 | V-type proton ATPase subunit E 1 | 26169/ | 4(2)/ | 102 | R.GALFGANANR.K | 15 |
| GABT_RAT/P50554 | 4-aminobutyrate aminotransfe- rase, mitochondrial | 57161/ | 4(2)/ | 124 | K.TIFMWYR.S | 6 |
| AATC_RAT/P13221 | Aspartate aminotransferase cytoplasmic | 46628/ | 4(4)/ | 149 | R.ITWSNPPAQGAR.I | 36 |
| NDKB_RAT/P19804 | Nucleoside diphosphate kinase B | 17386/ | 2(0)/ | 32 | K.DRPFFPGLVK.Y | 12 |
| KPYM_RAT/P11980 | Pyruvate kinase isozymes M1/M2 | 58294/ | 4(2)/ | 85 | R.LLFEELAR.A | 43 |
| HXK1_RAT/P05708 | Hexokinase-1 | 103540/ | 6(2)/ | 125 | K.EGLLFEGR.I | 28 |
| PGK1_RAT/P16617 | Phosphoglycerate kinase 1 | 44909/ | 3(2)/ | 70 | K.LGDVYVNDAFGTAHR.A | 38 |
| 2(2)/ | 76 | K.LGDVYVNDAFGTAHR.A | 26 | |||
| KCRB_RAT/P07335 | Creatine kinase B-type | 42983/ | 5(4)/ | 318 | R.GFCLPPHCSR.G | 44 |
| 2(1)/ | 52 | R.MGGYQPSDEHK.T + oxidation (HW) | 7 | |||
| KCRU_RAT/P25809 | Creatine kinase U-type | 47398/ | 5(2)/ | 102 | R.GWEFMWNER.L + oxidation (M) | 19 |
| 5(3)/ | 164 | R.GWEFMWNER.L + Oxidation (M) | 18 | |||
| ENOG_RAT/P07323 | Gamma-enolase | 47510/ | 5(2)/ | 98 | R.FAGHNFRNPSVL.- | 18 |
| ALDOC_RAT/P09117 | Fructose-biphosphate aldolase C | 39658/ | 5(4)/ | 264 | R.ALQASALSAWR.G | 59 |
| 4(1)/ | 104 | K.ELSDIALR.I | 19 | |||
| ENOA_RAT/P04764 | Alpha-enolase | 47440/ | 6(4)/ | 233 | R.SFRNPLAK.- | 36 |
| 2(1)/ | 60 | R.AAVPSGASTGIYEALELR.D | 19 | |||
| ALDOA_RAT/P05065 | Fructose-biphosphate aldolase A | 39783/ | 4(2)/ | 113 | M.PHPYPALTPEQK.K | 40 |
| 2(1)/9% | 54 | M.PHPYPALTPEQKK.E | 40 | |||
| DCE2_RAT/Q05683 | Glutamate decarboxylase 2 | 66215 | 1(1)/ | 27 | K.LCALLYGDSEKPAESGGSVTSR.A | 27 |
| PYGB_RAT/P53534 | Glycogen phosphorylase, brain form (fragment) | 96854/ | 5(1)/ | 98 | R.VIFLENYR.V | 5 |
| TPIS_RAT/P48500 | Triosephosphate isomerase | 27345/ | 4(3)/ | 115 | K.FFVGGNWK.M | 45 |
| 5(2)/ | 147 | K.FFVGGNWK.M | 49 | |||
| GLNA_RAT/P09606 | Glutamine synthetase | 42982/ | 5(2)/ | 133 | K.RHQYHIR.A | 24 |
| CALR_RAT/P18418 | Calreticulin | 48137/ | 3(2)/ | 197 | K.EQFLDGDAWTNR.W | 102 |
| SCRN1_RAT/Q6AY84 | Secernin-1 | 46994/ | 2(2)/ | 88 | K.VECTYISIDQVPR.T | 49 |
| IMPCT_RAT/Q5GFD9 | Protein IMPACT | 36314/ | 2(1)/ | 37 | K.SLEEIYMK.N + Oxidation (M) | 2 |
| PGAM1_RAT/P25113 | Phosphoglycerate mutase 1 | 28928/ | 3(2)/ | 121 | R.HGESAWNLENR.F | 59 |
| VDAC1_RAT/Q9Z2L0 | Voltage-dependent anion-selective channel protein 1 | 30851/ | 3(1)/ | 66 | R.WTEYGLTFTEK.W | 40 |
| 3(1)/ | 86 | R.VTQSNFAVGYK.T | 13 | |||
| VDAC2_RAT/P81155 | Voltage-dependent anion- selective channel protein 2 | 32353/ | 3(2)/ | 121 | R.SNFAVGYR.T | 41 |
| ALBU_RAT/P02770 | Serum albumin | 70682/ | 3(2)/ | 83 | K.LGEYGFQNAVLVR.Y | 35 |
| NSF_RAT/Q9QUL6 | Vesicle-fusing ATPase | 83170/ | 3(0)/ | 40 | K.GILLYGPPGCGK.T | 25 |
| EF1G_RAT/Q68FR6 | Elongation factor 1-gamma | 50371/ | 2(0)/ | 38 | K.AKDPFAHLPK.S | 14 |
| 1433G_RAT/P61983 | 14-3-3 protein gamma | 28456/ | 1(1)/ | 88 | K.NVTELNEPLSNEER.N | 88 |
| 1433E_RAT/P62260 | 14-3-3 protein épsilon | 29326/ | 3(3)/ | 142 | R.YLAEFATGNDR.K | 36 |
| 1433B_RAT/P35213 | 14-3-3 protein beta/alpha | 28151/ | 3(0)/ | 48 | R.NLLSVAYK.N | 16 |
| 1433Z_RAT/P63102 | 14-3-3 protein zeta/delta | 27925/ | 3(2)/ | 148 | R.NLLSVAYK.N | 25 |
| 1433T_RAT/P68255 | 14-3-3 protein theta | 28046/ | 2(1)/ | 76 | R.NLLSVAYK.N | 25 |
| PEBP1_RAT/P31044 | Phosphatidylethanolamine- binding protein 1 | 20902/ | 3(2)/ | 149 | K.FKVESFR.K | 39 |
| EF2_RAT/P05197 | Elongation factor 2 | 96192/ | 3(1)/ | 74 | M.VNFTVDQIR.A | 42 |
| GNAO_RAT/P59215 | Guanine nucleotide-binding protein G(o) subunit alpha | 40613/ | 5(2)/ | 114 | K.YYLDSLDR.I | 17 |
| 3(1)/ | 66 | R.AMDTLGVEYGDKER.K + Oxidation (M) | 18 | |||
| GBB1_RAT/P54311 | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | 38151/ | 3(2)/ | 76 | K.IYAMHWGTDSR.L | 43 |
| GDIA_RAT/P50398 | Rab GDP dissociation inhibitor alpha | 51074/ | 5(4)/ | 195 | R.IKLYSESLAR.Y | 22 |
| MK01_RAT/P63086 | Mitogen-activated protein kinase 1 | 41648/ | 4(0)/ | 79 | R.GQVFDVGPR.Y | 25 |
| STXB1_RAT/P61765 | Syntaxin-binding protein 1 | 67925/ | 2(1)/ | 41 | R.SQLLILDR.G | 13 |
| ANXA5_RAT/P14668 | Annexin A5 | 35779/ | 3(1)/ | 80 | K.VLTEIIASR.T | 22 |
| TBB2A_RAT/P85108 | Tubulin beta-2A chain | 50274/ | 4(3)/ | 137 | R.LHFFMPGFAPLTSR.G | 46 |
| TBB2C_RAT/Q6P9T8 | Tubulin beta-2C chain | 50225/ | 5(4)/ | 188 | R.YLTVAAVFR.G | 55 |
| TBB3_RAT/Q4QRB4 | Tubulin beta-3 chain | 50842/ | 2(1)/ | 72 | R.LHFFMPGFAPLTAR.G + oxidation (M) | 18 |
| TBA1A_RAT/P68370 | Tubulin alpha-1A chain | 50788/ | 4(4)/ | 246 | R.QLFHPEQLITGK.E | 32 |
| TBA1C_RAT/Q6AYZ1 | Tubulin alpha-1C chain | 50590/ | 4(4)/ | 246 | R.QLFHPEQLITGK.E | 32 |
| TBA1B_RAT/Q6P9V9 | Tubulin alpha-1B chain | 50804/ | 4(4)/ | 246 | R.QLFHPEQLITGK.E | 32 |
| TBA4A_RAT/Q5XIF6 | Tubulin alpha-4A chain | 50634/ | 4(4)/ | 185 | R.QLFHPEQLITGK.E | 32 |
| ACTB_RAT/P60711 | Actin, cytoplasmic 1 | 42052/ | 5(4)/ | 235 | R.AVFPSIVGRPR.H | 35 |
| MDHM_RAT/P04636 | Malate dehydrogenase, mitochondrial | 36117/ | 1(1)/ | 33 | K.AGAGSATLSMAYAGAR.F + Oxidation (M) | 33 |
| ROA2_RAT/A7VJC2 | Heterogeneous nuclear ribonucleoproteins A2/B1 | 37512/ | 3(2)/ | 86 | R.GGNFGFGDSR.G | 30 |
| COF1_RAT/P45592 | Cofilin-1 | 18749/ | 2(1)/ | 107 | R.YALYDATYETK.E | 90 |
| DYN1_RAT/P21575 | Dynamin-1 | 97576/ | 2(1)/ | 51 | K.FTDFEEVR.L | 26 |
| NFL_RAT/P19527 | Neurofilament light polypeptide | 61355/ | 5(4)/ | 195 | R.ALYEQEIR.D | 40 |
| NFM_RAT/P12839 | Neurofilament medium polypeptide | 95848/ | 2(2)/ | 83 | K.VQSLQDEVAFLR.S | 55 |
| PRDX1_RAT/Q63716 | Peroxiredoxin-1 | 22323/ | 4(2)/ | 133 | K.IGHPAPSFK.A | 50 |
| PRDX2_RAT/P35704 | Peroxiredoxin-2 | 21941/ | 1(1)/ | 25 | K.SLSQNYGVLKNDEGIAYR.G | 25 |
| SODM_RAT/P07895 | Superoxide dismutase [Mn], mitochondrial | 24887/ | 2(1)/ | 87 | K.AIWNVINWENVSQR.Y | 3 |
| GSTP1_RAT/P04906 | Glutathione S-transferase P | 23652/ | 2(1)/ | 47 | M.PPYTIVYFPVR.G | 47 |
| GRP78_RAT/P06761 | 78 kDa glucose-regulated protein | 72473/ | 1(1)/ | 29 | K.VTHAVVTVPAYFNDAQR.Q | 29 |
| HS90A_RAT/ | Heat shock protein HSP 90-alpha | 85161/ | 5(1)/ | 79 | R.RAPFDLFENR.K | 15 |
| HS90B_RAT/ | Heat shock protein HSP 90-beta | 83571/ | 2(0)/ | 26 | R.GVVDSEDLPLNISR.E | 15 |
| HSP7C_RAT/P63018 | Heat shock cognate 71 kDa protein | 71055/ | 4(2)/ | 114 | K.DAGTIAGLNVLR.I | 9 |
| ENPL_RAT/Q66HD0 | Endoplasmin | 92998/ | 4(2)/ | 103 | R.GLFDEYGSK.K | 45 |
| PPIA_RAT/P10111 | Peptidyl-prolyl cis-trans isomerase A | 18091/ | 4(0)/ | 81 | K.FEDENFILK.H | 23 |
| 5(5)/ | 224 | K.FEDENFILK.H | 45 | |||
| LDHA_RAT/P04642 | L-lactate dehydrogenase A chain | 18749/ | 4(2)/ | 105 | K.LVIITAGAR.Q | 30 |
| LDHB_RAT/P42123 | L-lactate dehydrogenase B chain | 36874/ | 3(2)/ | 121 | K.IVVVTAGVR.Q | 23 |
| MDHC_RAT/O88989 | Malate dehydrogenase, cytoplasmic | 36631/ | 4(2)/ | 105 | K.GEFITTVQQR.G | 37 |
| NDUS2_RAT/Q641Y2 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial | 52927/ | 2(1)/ | 56 | K.GEFGVYLVSDGSSRPYR.C | 33 |
| DLDH_RAT/Q6P6R2 | Dihydrolipoyl dehydrogenase, mitochondrial | 54574/ | 3(2)/ | 73 | R.GIEIPEVR.L | 12 |
| DHE3_RAT/P10860 | Glutamate dehydrogenase 1, mitochondrial | 61719/ | 1(1)/ | 32 | R.DDGSWEVIEGYR.A | 32 |
| ATPA_RAT/P15999 | ATP synthase subunit alpha, mitochondrial | 59831/ | 4(4)/ | 226 | R.VGLKAPGIIPR.I | 41 |
| 4(2)/ | 100 | R.VLSIGDGIAR.V | 16 | |||
| QCR1_RAT/Q68FY0 | Cytochrome b-c1 complex subunit 1 | 53500/ | 2(2)/ | 118 | R.RIPLAEWESR.I | 39 |
| QCR2_RAT/P32551 | Cytochrome b-c1 complex subunit 2, mitochondrial | 48423/ | 3(1)/ | 72 | K.AVAFQNPQTR.I | 21 |
| ACON_RAT/Q9ER34 | Aconitate hydratase mitochondrial | 86121/ | 6(6)/ | 300 | R.DGYAQILR.D | 49 |
| 6(4)/ | 175 | K.EGWPLDIR.V | 33 | |||
| EFTU_RAT/P85834 | Elongation factor Tu, mitochondrial | 49890/ | 1(1)/ | 54 | R.GITINAAHVEYSTAAR.H | 54 |
| SPTA2_RAT/P16086 | Spectrin alpha chain | 285261/ | 3(0)/ | 44 | R.EELITNWEQIR.T | 25 |
| ACTZ_RAT/P85515 | Alpha-centractin | 42701/ | 1(1)/ | 43 | K.YCFPNYVGRPK.H | 43 |
| SNAB_RAT/P85969 | Beta-soluble NSF attachment protein | 33791/ | 2(2)/ | 118 | K.VAAYAAQLEQYQK.A | 79 |
| TKT_RAT/P50137 | Transketolase | 68342/ | 3(1)/ | 67 | R.TVPFCSTFAAFFTR.A | 33 |
aAccession number of Swiss-Prot database.
bSequence coverage.
cProtein score: protein overall scores higher than 25 are significant (P < 0.05).
dIon score.
Figure 2Western blot confirmation of protein identity. 2-D gel of rat hypothalamus stained with Coomassie Blue G-250 (a). Immunobloting of glyceraldehyde-3-phosphate dehydrogenase (b).
Figure 3Protein Ontology. Identified proteins were classified according to their subcellular location (a), biological processes (b), molecular function (c), and protein class (d).