Literature DB >> 22508729

In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells.

João Pedro Fonseca1, Philipp A Steffen, Stefan Müller, James Lu, Anna Sawicka, Christian Seiser, Leonie Ringrose.   

Abstract

Epigenetic memory mediated by Polycomb group (PcG) proteins must be maintained during cell division, but must also be flexible to allow cell fate transitions. Here we quantify dynamic chromatin-binding properties of PH::GFP and PC::GFP in living Drosophila in two cell types that undergo defined differentiation and mitosis events. Quantitative fluorescence recovery after photobleaching (FRAP) analysis demonstrates that PcG binding has a higher plasticity in stem cells than in more determined cells and identifies a fraction of PcG proteins that binds mitotic chromatin with up to 300-fold longer residence times than in interphase. Mathematical modeling examines which parameters best distinguish stem cells from differentiated cells. We identify phosphorylation of histone H3 at Ser 28 as a potential mechanism governing the extent and rate of mitotic PC dissociation in different lineages. We propose that regulation of the kinetic properties of PcG-chromatin binding is an essential factor in the choice between stability and flexibility in the establishment of cell identities.

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Year:  2012        PMID: 22508729      PMCID: PMC3337459          DOI: 10.1101/gad.184648.111

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  49 in total

1.  Quantitative analysis of protein dynamics during asymmetric cell division.

Authors:  Bernd Mayer; Gregory Emery; Daniela Berdnik; Frederik Wirtz-Peitz; Juergen A Knoblich
Journal:  Curr Biol       Date:  2005-10-25       Impact factor: 10.834

2.  Analysis of binding at a single spatially localized cluster of binding sites by fluorescence recovery after photobleaching.

Authors:  Brian L Sprague; Florian Müller; Robert L Pego; Peter M Bungay; Diana A Stavreva; James G McNally
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

3.  Single-cell mapping of neural and glial gene expression in the developing Drosophila CNS midline cells.

Authors:  Scott R Wheeler; Joseph B Kearney; Amaris R Guardiola; Stephen T Crews
Journal:  Dev Biol       Date:  2006-04-24       Impact factor: 3.582

4.  Quantitative FRAP in analysis of molecular binding dynamics in vivo.

Authors:  James G McNally
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

5.  Asymmetric segregation of the tumor suppressor brat regulates self-renewal in Drosophila neural stem cells.

Authors:  Joerg Betschinger; Karl Mechtler; Juergen A Knoblich
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

6.  Polycomb preferentially targets stalled promoters of coding and noncoding transcripts.

Authors:  Daniel Enderle; Christian Beisel; Michael B Stadler; Moritz Gerstung; Prashanth Athri; Renato Paro
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 7.  Dividing cellular asymmetry: asymmetric cell division and its implications for stem cells and cancer.

Authors:  Ralph A Neumüller; Juergen A Knoblich
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

8.  Drosophila aurora B kinase is required for histone H3 phosphorylation and condensin recruitment during chromosome condensation and to organize the central spindle during cytokinesis.

Authors:  R Giet; D M Glover
Journal:  J Cell Biol       Date:  2001-02-19       Impact factor: 10.539

9.  The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing.

Authors:  P Buchenau; J Hodgson; H Strutt; D J Arndt-Jovin
Journal:  J Cell Biol       Date:  1998-04-20       Impact factor: 10.539

10.  Talking to chromatin: post-translational modulation of polycomb group function.

Authors:  Hanneke E C Niessen; Jeroen A Demmers; Jan Willem Voncken
Journal:  Epigenetics Chromatin       Date:  2009-09-01       Impact factor: 4.954

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  32 in total

Review 1.  Role of chromatin in water stress responses in plants.

Authors:  Soon-Ki Han; Doris Wagner
Journal:  J Exp Bot       Date:  2013-12-03       Impact factor: 6.992

Review 2.  Transcriptional silencing by polycomb-group proteins.

Authors:  Ueli Grossniklaus; Renato Paro
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-11-03       Impact factor: 10.005

Review 3.  Poised chromatin in the mammalian germ line.

Authors:  Bluma J Lesch; David C Page
Journal:  Development       Date:  2014-10       Impact factor: 6.868

Review 4.  What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory.

Authors:  Philipp A Steffen; Leonie Ringrose
Journal:  Nat Rev Mol Cell Biol       Date:  2014-05       Impact factor: 94.444

5.  An Unexpected Regulatory Cascade Governs a Core Function of the Drosophila PRC1 Chromatin Protein Su(z)2.

Authors:  Son C Nguyen; Stephanie Yu; Elaine Oberlick; Chao-Ting Wu
Journal:  Genetics       Date:  2016-11-23       Impact factor: 4.562

Review 6.  Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put.

Authors:  Jeffrey A Simon; Robert E Kingston
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

7.  TrxG and PcG proteins but not methylated histones remain associated with DNA through replication.

Authors:  Svetlana Petruk; Yurii Sedkov; Danika M Johnston; Jacob W Hodgson; Kathryn L Black; Sina K Kovermann; Samantha Beck; Eli Canaani; Hugh W Brock; Alexander Mazo
Journal:  Cell       Date:  2012-08-23       Impact factor: 41.582

8.  Neuronal necrosis is regulated by a conserved chromatin-modifying cascade.

Authors:  Kai Liu; Lianggong Ding; Yuhong Li; Hui Yang; Chunyue Zhao; Ye Lei; Shuting Han; Wei Tao; Dengshun Miao; Hermann Steller; Michael J Welsh; Lei Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

Review 9.  How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation.

Authors:  Aykut Erbaş; John F Marko
Journal:  Curr Opin Chem Biol       Date:  2019-10-02       Impact factor: 8.822

10.  Capturing the Onset of PRC2-Mediated Repressive Domain Formation.

Authors:  Ozgur Oksuz; Varun Narendra; Chul-Hwan Lee; Nicolas Descostes; Gary LeRoy; Ramya Raviram; Lili Blumenberg; Kelly Karch; Pedro P Rocha; Benjamin A Garcia; Jane A Skok; Danny Reinberg
Journal:  Mol Cell       Date:  2018-06-21       Impact factor: 17.970

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