Literature DB >> 25249456

Poised chromatin in the mammalian germ line.

Bluma J Lesch1, David C Page2.   

Abstract

Poised (bivalent) chromatin is defined by the simultaneous presence of histone modifications associated with both gene activation and repression. This epigenetic feature was first observed at promoters of lineage-specific regulatory genes in embryonic stem cells in culture. More recent work has shown that, in vivo, mammalian germ cells maintain poised chromatin at promoters of many genes that regulate somatic development, and that they retain this state from fetal stages through meiosis and gametogenesis. We hypothesize that the poised chromatin state is essential for germ cell identity and function. We propose three roles for poised chromatin in the mammalian germ line: prevention of DNA methylation, maintenance of germ cell identity and preparation for totipotency. We discuss these roles in the context of recently proposed models for germline potency and epigenetic inheritance.
© 2014. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Bivalent; Chromatin; Germ cell; Germ line; Pluripotent; Poised

Mesh:

Substances:

Year:  2014        PMID: 25249456      PMCID: PMC4197577          DOI: 10.1242/dev.113027

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  79 in total

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Journal:  Development       Date:  2006-08-03       Impact factor: 6.868

2.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

3.  Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice.

Authors:  Kazuki Kurimoto; Yukihiro Yabuta; Yasuhide Ohinata; Mayo Shigeta; Kaori Yamanaka; Mitinori Saitou
Journal:  Genes Dev       Date:  2008-06-15       Impact factor: 11.361

4.  Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation.

Authors:  Shaun D Fouse; Yin Shen; Matteo Pellegrini; Steve Cole; Alexander Meissner; Leander Van Neste; Rudolf Jaenisch; Guoping Fan
Journal:  Cell Stem Cell       Date:  2008-02-07       Impact factor: 24.633

5.  Gene expression dynamics during germline specification in mice identified by quantitative single-cell gene expression profiling.

Authors:  Yukihiro Yabuta; Kazuki Kurimoto; Yasuhide Ohinata; Yoshiyuki Seki; Mitinori Saitou
Journal:  Biol Reprod       Date:  2006-07-26       Impact factor: 4.285

6.  A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing.

Authors:  Joyce E Ohm; Kelly M McGarvey; Xiaobing Yu; Linzhao Cheng; Kornel E Schuebel; Leslie Cope; Helai P Mohammad; Wei Chen; Vincent C Daniel; Wayne Yu; David M Berman; Thomas Jenuwein; Kevin Pruitt; Saul J Sharkis; D Neil Watkins; James G Herman; Stephen B Baylin
Journal:  Nat Genet       Date:  2007-01-09       Impact factor: 38.330

7.  Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

Authors:  Fabio Mohn; Michael Weber; Michael Rebhan; Tim C Roloff; Jens Richter; Michael B Stadler; Miriam Bibel; Dirk Schübeler
Journal:  Mol Cell       Date:  2008-05-29       Impact factor: 17.970

Review 8.  Germ versus soma decisions: lessons from flies and worms.

Authors:  Susan Strome; Ruth Lehmann
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

9.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Authors:  Tarjei S Mikkelsen; Manching Ku; David B Jaffe; Biju Issac; Erez Lieberman; Georgia Giannoukos; Pablo Alvarez; William Brockman; Tae-Kyung Kim; Richard P Koche; William Lee; Eric Mendenhall; Aisling O'Donovan; Aviva Presser; Carsten Russ; Xiaohui Xie; Alexander Meissner; Marius Wernig; Rudolf Jaenisch; Chad Nusbaum; Eric S Lander; Bradley E Bernstein
Journal:  Nature       Date:  2007-07-01       Impact factor: 49.962

10.  Coordinate regulation of DNA methyltransferase expression during oogenesis.

Authors:  Diana Lucifero; Sophie La Salle; Déborah Bourc'his; Josée Martel; Timothy H Bestor; Jacquetta M Trasler
Journal:  BMC Dev Biol       Date:  2007-04-19       Impact factor: 1.978

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  31 in total

1.  Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification.

Authors:  Patricia Respuela; Miloš Nikolić; Minjia Tan; Peter Frommolt; Yingming Zhao; Joanna Wysocka; Alvaro Rada-Iglesias
Journal:  Cell Stem Cell       Date:  2016-01-07       Impact factor: 24.633

Review 2.  Dynamics of H3K27me3 methylation and demethylation in plant development.

Authors:  Eng-Seng Gan; Yifeng Xu; Toshiro Ito
Journal:  Plant Signal Behav       Date:  2015

3.  Not All H3K4 Methylations Are Created Equal: Mll2/COMPASS Dependency in Primordial Germ Cell Specification.

Authors:  Deqing Hu; Xin Gao; Kaixiang Cao; Marc A Morgan; Gloria Mas; Edwin R Smith; Andrew G Volk; Elizabeth T Bartom; John D Crispino; Luciano Di Croce; Ali Shilatifard
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

Review 4.  Repression of somatic cell fate in the germline.

Authors:  Valérie J Robert; Steve Garvis; Francesca Palladino
Journal:  Cell Mol Life Sci       Date:  2015-06-05       Impact factor: 9.261

5.  The Trithorax group protein dMLL3/4 instructs the assembly of the zygotic genome at fertilization.

Authors:  Pedro Prudêncio; Leonardo G Guilgur; João Sobral; Jörg D Becker; Rui Gonçalo Martinho; Paulo Navarro-Costa
Journal:  EMBO Rep       Date:  2018-07-23       Impact factor: 8.807

6.  SCML2 promotes heterochromatin organization in late spermatogenesis.

Authors:  So Maezawa; Kazuteru Hasegawa; Kris G Alavattam; Mayuka Funakoshi; Taiga Sato; Artem Barski; Satoshi H Namekawa
Journal:  J Cell Sci       Date:  2018-09-03       Impact factor: 5.285

7.  Functional Roles of Acetylated Histone Marks at Mouse Meiotic Recombination Hot Spots.

Authors:  Irina V Getun; Zhen Wu; Mohammad Fallahi; Souad Ouizem; Qin Liu; Weimin Li; Roberta Costi; William R Roush; John L Cleveland; Philippe R J Bois
Journal:  Mol Cell Biol       Date:  2017-01-19       Impact factor: 4.272

8.  A rapidly evolved domain, the SCML2 DNA-binding repeats, contributes to chromatin binding of mouse SCML2†.

Authors:  So Maezawa; Kris G Alavattam; Mayu Tatara; Rika Nagai; Artem Barski; Satoshi H Namekawa
Journal:  Biol Reprod       Date:  2019-02-01       Impact factor: 4.285

Review 9.  Developmental origins of male subfertility: role of infection, inflammation, and environmental factors.

Authors:  Undraga Schagdarsurengin; Patrick Western; Klaus Steger; Andreas Meinhardt
Journal:  Semin Immunopathol       Date:  2016-06-17       Impact factor: 9.623

10.  Parallel evolution of male germline epigenetic poising and somatic development in animals.

Authors:  Bluma J Lesch; Sherman J Silber; John R McCarrey; David C Page
Journal:  Nat Genet       Date:  2016-06-13       Impact factor: 38.330

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