| Literature DB >> 22506048 |
Richard A Kerber1, Elizabeth O'Brien, Kenneth M Boucher, Ken R Smith, Richard M Cawthon.
Abstract
BACKGROUND: Although there is abundant evidence that human longevity is heritable, efforts to map loci responsible for variation in human lifespan have had limited success. METHODOLOGY/PRINCIPALEntities:
Mesh:
Year: 2012 PMID: 22506048 PMCID: PMC3323558 DOI: 10.1371/journal.pone.0034746
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic Characteristics of Study Subjects.
| Affected | Affected with Typed Relative | ||||
| Age | Male | Female | Male | Female | Total |
| 86–89 | 36 | 5 | 27 | 5 | 32 |
| 90–92 | 65 | 60 | 51 | 49 | 100 |
| 93–95 | 65 | 53 | 50 | 41 | 91 |
| 96–97 | 43 | 21 | 31 | 16 | 47 |
| 98–99 | 19 | 18 | 7 | 13 | 20 |
| 100+ | 19 | 29 | 14 | 21 | 35 |
| Total | 247 | 186 | 180 | 145 | 325 |
Relative Pairs: “Total” is a count of all pairs of a given type among genotyped affected individuals. “Closest” is a tabulation of the closest genotyped affected relative among all genotyped affected individuals.
Figure 1FLAG study linkage results for all autosomes.
A) nominal singlepoint p-values; B) nominal multipoint p-values.
Markers linked to exceptional longevity with nominal p-value<0.01.
| Chromosome | Marker | Map Position (cM) | Z | Asymptoticp-val | Adjusted p-value |
| 1 | D1S2667 | 20.36 | 2.84 | 0.00223 | 0.966 |
| 1 | D1S2628 | 168.68 | 2.76 | 0.00288 | 0.976 |
| 3 | D3S1297 | 5.05 | 2.35 | 0.00928 | 1.000 |
| 3 | D3S1266 | 52.22 | 2.60 | 0.00469 | 0.998 |
| 3 | D3S3547 | 56.45 | 4.19 | 0.00001 | 0.090 |
| 4 | D4S1615 | 129.75 | 2.49 | 0.00634 | 1.000 |
| 5 | D5S424 | 93.23 | 3.14 | 0.00085 | 0.752 |
| 7 | D7S502 | 80.86 | 2.55 | 0.00545 | 1.000 |
| 8 | D8S585 | 47.96 | 2.62 | 0.00438 | 0.996 |
| 8 | D8S531 | 63.93 | 2.45 | 0.00705 | 1.000 |
| 8 | D8S281 | 119.66 | 2.80 | 0.00254 | 0.970 |
| 10 | D10S196 | 71.95 | 3.15 | 0.00082 | 0.740 |
| 15 | D15S1507 | 68.15 | 2.67 | 0.00375 | 0.992 |
| 15 | D15S216 | 75.09 | 2.41 | 0.00796 | 1.000 |
| 17 | D17S1795 | 77.3 | 3.27 | 0.00054 | 0.626 |
| 18 | D18S469 | 106.38 | 3.00 | 0.00137 | 0.890 |
| 18 | D18S1161 | 111.05 | 3.30 | 0.00048 | 0.592 |
| 20 | D20S432 | 49.66 | 2.57 | 0.00504 | 1.000 |
| 21 | D21S1898 | 38.62 | 2.71 | 0.00338 | 0.988 |
Singlepoint scores per marker.
Multipoint linked regions with adjusted p-value<1.0.
| Chromosome | Low(cM) | High(cM) | max(Z) | min(p) | Adjusted p-value |
| 1 | 20 | 21 | 2.73 | 0.00315 | 1.00 |
| 1 | 167 | 171 | 2.86 | 0.00215 | 1.00 |
| 3 | 53 | 58 | 4.40 | 0.00001 | 0.20 |
| 4 | 130 | 131 | 2.40 | 0.00819 | 1.00 |
| 5 | 92 | 96 | 2.85 | 0.00217 | 1.00 |
| 7 | 81 | 81 | 2.38 | 0.00862 | 1.00 |
| 8 | 45 | 48 | 2.87 | 0.00207 | 1.00 |
| 8 | 64 | 65 | 2.43 | 0.00757 | 1.00 |
| 8 | 120 | 121 | 2.56 | 0.00530 | 1.00 |
| 10 | 72 | 72 | 2.99 | 0.00142 | 1.00 |
| 10 | 115 | 118 | 2.64 | 0.00421 | 1.00 |
| 15 | 65 | 68 | 2.75 | 0.00301 | 1.00 |
| 17 | 77 | 78 | 3.01 | 0.00133 | 1.00 |
| 18 | 82 | 83 | 2.42 | 0.00774 | 1.00 |
| 18 | 105 | 114 | 4.30 | 0.00001 | 0.25 |
| 20 | 50 | 50 | 2.40 | 0.00814 | 1.00 |
| 21 | 37 | 39 | 2.48 | 0.00658 | 1.00 |
Figure 2Comparison of singlepoint linkage results for chromosome 3 under varying definitions of affected status (nominal p-values).
Figure 3Comparison of chromosome 3 linkage results reported here to that reported by Boyden and Kunkel [ (nominal p-values).
Genes in 3p22-24 linked region.
| Symbol | Start | Stop | Entrez | Name |
| NEK10 | 27232101 | 27385916 | 152110 | NIMA (never in mitosis gene a)- related kinase 10 |
| SLC4A7 | 27389218 | 27473249 | 9497 | solute carrier family 4, sodium bicarbonate cotransporter, member 7 |
| EOMES | 27732890 | 27738789 | 8320 | eomesodermin |
| CMC1 | 28258128 | 28336267 | 152100 | COX assembly mitochondrial protein homolog (S. cerevisiae) |
| AZI2 | 28339090 | 28365579 | 64343 | 5-azacytidine induced 2 |
| ZCWPW2 | 28406991 | 28541636 | 152098 | zinc finger, CW type with PWWP domain 2 |
| RBMS3 | 29297807 | 30026890 | 27303 | RNA binding motif, single stranded interacting protein 3 |
| TGFBR2 | 30622998 | 30710637 | 7048 | transforming growth factor, beta receptor II (70/80 kDa) |
| GADL1 | 30742696 | 30911157 | 339896 | glutamate decarboxylase-like 1 |
Start and stop positions are given relative to the Human March 2006 (NCBI36/hg18) assembly.