Literature DB >> 22498689

An integrated region-, boundary-, shape-based active contour for multiple object overlap resolution in histological imagery.

Sahirzeeshan Ali1, Anant Madabhushi.   

Abstract

Active contours and active shape models (ASM) have been widely employed in image segmentation. A major limitation of active contours, however, is in their 1) inability to resolve boundaries of intersecting objects and to 2) handle occlusion. Multiple overlapping objects are typically segmented out as a single object. On the other hand, ASMs are limited by point correspondence issues since object landmarks need to be identified across multiple objects for initial object alignment. ASMs are also are constrained in that they can usually only segment a single object in an image. In this paper, we present a novel synergistic boundary and region-based active contour model that incorporates shape priors in a level set formulation with automated initialization based on watershed. We demonstrate an application of these synergistic active contour models using multiple level sets to segment nuclear and glandular structures on digitized histopathology images of breast and prostate biopsy specimens. Unlike previous related approaches, our model is able to resolve object overlap and separate occluded boundaries of multiple objects simultaneously. The energy functional of the active contour is comprised of three terms. The first term is the prior shape term, modeled on the object of interest, thereby constraining the deformation achievable by the active contour. The second term, a boundary-based term detects object boundaries from image gradients. The third term drives the shape prior and the contour towards the object boundary based on region statistics. The results of qualitative and quantitative evaluation on 100 prostate and 14 breast cancer histology images for the task of detecting and segmenting nuclei and lymphocytes reveals that the model easily outperforms two state of the art segmentation schemes (geodesic active contour and Rousson shape-based model) and on average is able to resolve up to 91% of overlapping/occluded structures in the images.

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Year:  2012        PMID: 22498689     DOI: 10.1109/TMI.2012.2190089

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  33 in total

1.  A resolution adaptive deep hierarchical (RADHicaL) learning scheme applied to nuclear segmentation of digital pathology images.

Authors:  Andrew Janowczyk; Scott Doyle; Hannah Gilmore; Anant Madabhushi
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2016-04-28

2.  Convolutional neural network initialized active contour model with adaptive ellipse fitting for nuclear segmentation on breast histopathological images.

Authors:  Jun Xu; Lei Gong; Guanhao Wang; Cheng Lu; Hannah Gilmore; Shaoting Zhang; Anant Madabhushi
Journal:  J Med Imaging (Bellingham)       Date:  2019-02-08

3.  Effective nuclei segmentation with sparse shape prior and dynamic occlusion constraint for glioblastoma pathology images.

Authors:  Pengyue Zhang; Fusheng Wang; George Teodoro; Yanhui Liang; Mousumi Roy; Daniel Brat; Jun Kong
Journal:  J Med Imaging (Bellingham)       Date:  2019-03-14

4.  UNSUPERVISED SHAPE PRIOR MODELING FOR CELL SEGMENTATION IN NEUROENDOCRINE TUMOR.

Authors:  Fuyong Xing; Lin Yang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2015-07-23

5.  Fast Cell Segmentation Using Scalable Sparse Manifold Learning and Affine Transform-approximated Active Contour.

Authors:  Fuyong Xing; Lin Yang
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-18

6.  Transfer Shape Modeling Towards High-throughput Microscopy Image Segmentation.

Authors:  Fuyong Xing; Xiaoshuang Shi; Zizhao Zhang; JinZheng Cai; Yuanpu Xie; Lin Yang
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

7.  Robust selection-based sparse shape model for lung cancer image segmentation.

Authors:  Fuyong Xing; Lin Yang
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

8.  Nuclear Shape and Architecture in Benign Fields Predict Biochemical Recurrence in Prostate Cancer Patients Following Radical Prostatectomy: Preliminary Findings.

Authors:  George Lee; Robert W Veltri; Guangjing Zhu; Sahirzeeshan Ali; Jonathan I Epstein; Anant Madabhushi
Journal:  Eur Urol Focus       Date:  2016-06-16

9.  Characterization of tissue histopathology via predictive sparse decomposition and spatial pyramid matching.

Authors:  Hang Chang; Nandita Nayak; Paul T Spellman; Bahram Parvin
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

Review 10.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06
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