Literature DB >> 22493202

Genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859.

Vikas Sharma1, Samriti Midha, Manish Ranjan, Anil Kumar Pinnaka, Prabhu B Patil.   

Abstract

We report the 4.94-Mb genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859, the causal agent of bacterial leaf blight disease in pomegranate. The draft genome will aid in comparative genomics, epidemiological studies, and quarantine of this devastating phytopathogen.

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Year:  2012        PMID： 22493202      PMCID： PMC3347085          DOI： 10.1128/JB.00181-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  4 in total

1.  Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimens.

Authors:  Wenbin Li; Qijian Song; Ronald H Brlansky; John S Hartung
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-12       Impact factor: 11.205

2.  Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Authors:  Adam J Bogdanove; Ralf Koebnik; Hong Lu; Ayako Furutani; Samuel V Angiuoli; Prabhu B Patil; Marie-Anne Van Sluys; Robert P Ryan; Damien F Meyer; Sang-Wook Han; Gudlur Aparna; Misha Rajaram; Arthur L Delcher; Adam M Phillippy; Daniela Puiu; Michael C Schatz; Martin Shumway; Daniel D Sommer; Cole Trapnell; Faiza Benahmed; George Dimitrov; Ramana Madupu; Diana Radune; Steven Sullivan; Gopaljee Jha; Hiromichi Ishihara; Sang-Won Lee; Alok Pandey; Vikas Sharma; Malinee Sriariyanun; Boris Szurek; Casiana M Vera-Cruz; Karin S Dorman; Pamela C Ronald; Valérie Verdier; J Maxwell Dow; Ramesh V Sonti; Seiji Tsuge; Volker P Brendel; Pablo D Rabinowicz; Jan E Leach; Frank F White; Steven L Salzberg
Journal:  J Bacteriol       Date:  2011-07-22       Impact factor: 3.490

3.  The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Authors:  F Meyer; D Paarmann; M D'Souza; R Olson; E M Glass; M Kubal; T Paczian; A Rodriguez; R Stevens; A Wilke; J Wilkening; R A Edwards
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169

4.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  4 in total
  7 in total

1.  Genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941.

Authors:  Samriti Midha; Manish Ranjan; Vikas Sharma; Anil Kumar Pinnaka; Prabhu B Patil
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

2.  Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity.

Authors:  Kanika Bansal; Samriti Midha; Sanjeet Kumar; Prabhu B Patil
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

3.  Identification and validation of SSR markers for Xanthomonas axonopodis pv. punicae an incitant of bacterial blight of pomegranate.

Authors:  Prakash G Patil; Jyotsana Sharma; Manjunatha Nanjundappa; N V Singh; Abhishek Bohra; Raghavendra Gunnaiah; Shivani M Jamma; Jeer Vinayaka; Vipul R Sangnure; R A Marathe
Journal:  3 Biotech       Date:  2022-06-22       Impact factor: 2.893

4.  Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives.

Authors:  Samriti Midha; Prabhu B Patil
Journal:  Appl Environ Microbiol       Date:  2014-08-01       Impact factor: 4.792

5.  Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range.

Authors:  Neha Jalan; Dibyendu Kumar; Maxuel O Andrade; Fahong Yu; Jeffrey B Jones; James H Graham; Frank F White; João C Setubal; Nian Wang
Journal:  BMC Genomics       Date:  2013-08-14       Impact factor: 3.969

6.  Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

Authors:  Mario L Arrieta-Ortiz; Luis M Rodríguez-R; Álvaro L Pérez-Quintero; Lucie Poulin; Ana C Díaz; Nathalia Arias Rojas; Cesar Trujillo; Mariana Restrepo Benavides; Rebecca Bart; Jens Boch; Tristan Boureau; Armelle Darrasse; Perrine David; Thomas Dugé de Bernonville; Paula Fontanilla; Lionel Gagnevin; Fabien Guérin; Marie-Agnès Jacques; Emmanuelle Lauber; Pierre Lefeuvre; Cesar Medina; Edgar Medina; Nathaly Montenegro; Alejandra Muñoz Bodnar; Laurent D Noël; Juan F Ortiz Quiñones; Daniela Osorio; Carolina Pardo; Prabhu B Patil; Stéphane Poussier; Olivier Pruvost; Isabelle Robène-Soustrade; Robert P Ryan; Javier Tabima; Oscar G Urrego Morales; Christian Vernière; Sébastien Carrere; Valérie Verdier; Boris Szurek; Silvia Restrepo; Camilo López; Ralf Koebnik; Adriana Bernal
Journal:  PLoS One       Date:  2013-11-22       Impact factor: 3.240

7.  Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content.

Authors:  Joachim Vandroemme; Bart Cottyn; Steve Baeyen; Paul De Vos; Martine Maes
Journal:  BMC Genomics       Date:  2013-11-25       Impact factor: 3.969
  7 in total

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