Literature DB >> 21784931

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J Bogdanove1, Ralf Koebnik, Hong Lu, Ayako Furutani, Samuel V Angiuoli, Prabhu B Patil, Marie-Anne Van Sluys, Robert P Ryan, Damien F Meyer, Sang-Wook Han, Gudlur Aparna, Misha Rajaram, Arthur L Delcher, Adam M Phillippy, Daniela Puiu, Michael C Schatz, Martin Shumway, Daniel D Sommer, Cole Trapnell, Faiza Benahmed, George Dimitrov, Ramana Madupu, Diana Radune, Steven Sullivan, Gopaljee Jha, Hiromichi Ishihara, Sang-Won Lee, Alok Pandey, Vikas Sharma, Malinee Sriariyanun, Boris Szurek, Casiana M Vera-Cruz, Karin S Dorman, Pamela C Ronald, Valérie Verdier, J Maxwell Dow, Ramesh V Sonti, Seiji Tsuge, Volker P Brendel, Pablo D Rabinowicz, Jan E Leach, Frank F White, Steven L Salzberg.   

Abstract

Xanthomonas is a large genus of bacteria that collectively cause disease on more than 300 plant species. The broad host range of the genus contrasts with stringent host and tissue specificity for individual species and pathovars. Whole-genome sequences of Xanthomonas campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect the mesophyll tissue of the leading models for plant biology, Arabidopsis thaliana and rice, respectively, were determined and provided insight into the genetic determinants of host and tissue specificity. Comparisons were made with genomes of closely related strains that infect the vascular tissue of the same hosts and across a larger collection of complete Xanthomonas genomes. The results suggest a model in which complex sets of adaptations at the level of gene content account for host specificity and subtler adaptations at the level of amino acid or noncoding regulatory nucleotide sequence determine tissue specificity.

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Year:  2011        PMID: 21784931      PMCID: PMC3187462          DOI: 10.1128/JB.05262-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  96 in total

Review 1.  Mechanisms of cyclic-di-GMP signaling in bacteria.

Authors:  Urs Jenal; Jacob Malone
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

2.  Effects on promoter activity of base substitutions in the cis-acting regulatory element of HrpXo regulons in Xanthomonas oryzae pv. oryzae.

Authors:  Seiji Tsuge; Shinsaku Terashima; Ayako Furutani; Hirokazu Ochiai; Takashi Oku; Kazunori Tsuno; Hisatoshi Kaku; Yasuyuki Kubo
Journal:  J Bacteriol       Date:  2005-04       Impact factor: 3.490

3.  A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species.

Authors:  E Fargier; M Fischer-Le Saux; C Manceau
Journal:  Syst Appl Microbiol       Date:  2010-12-30       Impact factor: 4.022

4.  Structure of TonB in complex with FhuA, E. coli outer membrane receptor.

Authors:  Peter D Pawelek; Nathalie Croteau; Christopher Ng-Thow-Hing; Cezar M Khursigara; Natalia Moiseeva; Marc Allaire; James W Coulton
Journal:  Science       Date:  2006-06-02       Impact factor: 47.728

5.  Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Authors:  A C R da Silva; J A Ferro; F C Reinach; C S Farah; L R Furlan; R B Quaggio; C B Monteiro-Vitorello; M A Van Sluys; N F Almeida; L M C Alves; A M do Amaral; M C Bertolini; L E A Camargo; G Camarotte; F Cannavan; J Cardozo; F Chambergo; L P Ciapina; R M B Cicarelli; L L Coutinho; J R Cursino-Santos; H El-Dorry; J B Faria; A J S Ferreira; R C C Ferreira; M I T Ferro; E F Formighieri; M C Franco; C C Greggio; A Gruber; A M Katsuyama; L T Kishi; R P Leite; E G M Lemos; M V F Lemos; E C Locali; M A Machado; A M B N Madeira; N M Martinez-Rossi; E C Martins; J Meidanis; C F M Menck; C Y Miyaki; D H Moon; L M Moreira; M T M Novo; V K Okura; M C Oliveira; V R Oliveira; H A Pereira; A Rossi; J A D Sena; C Silva; R F de Souza; L A F Spinola; M A Takita; R E Tamura; E C Teixeira; R I D Tezza; M Trindade dos Santos; D Truffi; S M Tsai; F F White; J C Setubal; J P Kitajima
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

6.  Bacterial genes involved in type I secretion and sulfation are required to elicit the rice Xa21-mediated innate immune response.

Authors:  Francisco Goes da Silva; Yuwei Shen; Christopher Dardick; Saul Burdman; Ram C Yadav; Alfredo Lopez de Leon; Pamela C Ronald
Journal:  Mol Plant Microbe Interact       Date:  2004-06       Impact factor: 4.171

7.  Interaction of Xanthomonas campestris with Arabidopsis thaliana: characterization of a gene from X. c. pv. raphani that confers avirulence to most A. thaliana accessions.

Authors:  J E Parker; C E Barber; M J Fan; M J Daniels
Journal:  Mol Plant Microbe Interact       Date:  1993 Mar-Apr       Impact factor: 4.171

8.  New type III effectors from Xanthomonas campestris pv. vesicatoria trigger plant reactions dependent on a conserved N-myristoylation motif.

Authors:  Frank Thieme; Robert Szczesny; Alexander Urban; Oliver Kirchner; Gerd Hause; Ulla Bonas
Journal:  Mol Plant Microbe Interact       Date:  2007-10       Impact factor: 4.171

9.  Substrate-induced transmembrane signaling in the cobalamin transporter BtuB.

Authors:  David P Chimento; Arun K Mohanty; Robert J Kadner; Michael C Wiener
Journal:  Nat Struct Biol       Date:  2003-05

10.  The rpfA gene of Xanthomonas campestris pathovar campestris, which is involved in the regulation of pathogenicity factor production, encodes an aconitase.

Authors:  T J Wilson; N Bertrand; J L Tang; J X Feng; M Q Pan; C E Barber; J M Dow; M J Daniels
Journal:  Mol Microbiol       Date:  1998-06       Impact factor: 3.501

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  72 in total

1.  New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae.

Authors:  L Poulin; P Grygiel; M Magne; L Gagnevin; L M Rodriguez-R; N Forero Serna; S Zhao; M El Rafii; S Dao; C Tekete; I Wonni; O Koita; O Pruvost; V Verdier; C Vernière; R Koebnik
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859.

Authors:  Vikas Sharma; Samriti Midha; Manish Ranjan; Anil Kumar Pinnaka; Prabhu B Patil
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

3.  Genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941.

Authors:  Samriti Midha; Manish Ranjan; Vikas Sharma; Anil Kumar Pinnaka; Prabhu B Patil
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

4.  The Ax21 protein is a cell-cell signal that regulates virulence in the nosocomial pathogen Stenotrophomonas maltophilia.

Authors:  Yvonne McCarthy; J Maxwell Dow; Robert P Ryan
Journal:  J Bacteriol       Date:  2011-09-09       Impact factor: 3.490

5.  GamR, the LysR-Type Galactose Metabolism Regulator, Regulates hrp Gene Expression via Transcriptional Activation of Two Key hrp Regulators, HrpG and HrpX, in Xanthomonas oryzae pv. oryzae.

Authors:  M Mamunur Rashid; Yumi Ikawa; Seiji Tsuge
Journal:  Appl Environ Microbiol       Date:  2016-06-13       Impact factor: 4.792

6.  Immunity at Cauliflower Hydathodes Controls Systemic Infection by Xanthomonas campestris pv campestris.

Authors:  Aude Cerutti; Alain Jauneau; Marie-Christine Auriac; Emmanuelle Lauber; Yves Martinez; Serge Chiarenza; Nathalie Leonhardt; Richard Berthomé; Laurent D Noël
Journal:  Plant Physiol       Date:  2017-02-09       Impact factor: 8.340

7.  HrcT is a key component of the type III secretion system in Xanthomonas spp. and also regulates the expression of the key hrp transcriptional activator HrpX.

Authors:  Zhi-Yang Liu; Li-Fang Zou; Xiao-Bo Xue; Lu-Lu Cai; Wen-Xiu Ma; Li Xiong; Zhi-Yuan Ji; Gong-You Chen
Journal:  Appl Environ Microbiol       Date:  2014-04-18       Impact factor: 4.792

8.  A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.

Authors:  Lindsay R Triplett; Stephen P Cohen; Christopher Heffelfinger; Clarice L Schmidt; Alejandra I Huerta; Cheick Tekete; Valerie Verdier; Adam J Bogdanove; Jan E Leach
Journal:  Plant J       Date:  2016-08-02       Impact factor: 6.417

9.  Quantitative, Image-Based Phenotyping Methods Provide Insight into Spatial and Temporal Dimensions of Plant Disease.

Authors:  Andrew M Mutka; Sarah J Fentress; Joel W Sher; Jeffrey C Berry; Chelsea Pretz; Dmitri A Nusinow; Rebecca Bart
Journal:  Plant Physiol       Date:  2016-07-21       Impact factor: 8.340

10.  HrpE3 is a type III effector protein required for full virulence of Xanthomonas oryzae pv. oryzicola in rice.

Authors:  Yiping Cui; Lifang Zou; Huasong Zou; Yurong Li; Muhammad Zakria; Gongyou Chen
Journal:  Mol Plant Pathol       Date:  2013-05-14       Impact factor: 5.663

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