Literature DB >> 22482909

Structure unifies the viral universe.

Nicola G A Abrescia1, Dennis H Bamford, Jonathan M Grimes, David I Stuart.   

Abstract

Is it possible to meaningfully comprehend the diversity of the viral world? We propose that it is. This is based on the observation that, although there is immense genomic variation, every infective virion is restricted by strict constraints in structure space (i.e., there are a limited number of ways to fold a protein chain, and only a small subset of these have the potential to construct a virion, the hallmark of a virus). We have previously suggested the use of structure for the higher-order classification of viruses, where genomic similarities are no longer observable. Here, we summarize the arguments behind this proposal, describe the current status of structural work, highlighting its power to infer common ancestry, and discuss the limitations and obstacles ahead of us. We also reflect on the future opportunities for a more concerted effort to provide high-throughput methods to facilitate the large-scale sampling of the virosphere.

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Year:  2012        PMID: 22482909     DOI: 10.1146/annurev-biochem-060910-095130

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  124 in total

1.  Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1.

Authors:  Antti P Aalto; David Bitto; Janne J Ravantti; Dennis H Bamford; Juha T Huiskonen; Hanna M Oksanen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

2.  Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea.

Authors:  Maija K Pietilä; Nina S Atanasova; Violeta Manole; Lassi Liljeroos; Sarah J Butcher; Hanna M Oksanen; Dennis H Bamford
Journal:  J Virol       Date:  2012-02-22       Impact factor: 5.103

3.  Cryphonectria nitschkei virus 1 structure shows that the capsid protein of chrysoviruses is a duplicated helix-rich fold conserved in fungal double-stranded RNA viruses.

Authors:  Josué Gómez-Blanco; Daniel Luque; José M González; José L Carrascosa; Carlos Alfonso; Benes Trus; Wendy M Havens; Said A Ghabrial; José R Castón
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

4.  Protein domain definition should allow for conditional disorder.

Authors:  Kavestri Yegambaram; Esther M M Bulloch; Richard L Kingston
Journal:  Protein Sci       Date:  2013-09-20       Impact factor: 6.725

5.  Conservation and Divergence of the I-Domain Inserted into the Ubiquitous HK97 Coat Protein Fold in P22-Like Bacteriophages.

Authors:  Therese N Tripler; Anne R Kaplan; Andrei T Alexandrescu; Carolyn M Teschke
Journal:  J Virol       Date:  2019-04-17       Impact factor: 5.103

6.  Multiple origins of viral capsid proteins from cellular ancestors.

Authors:  Mart Krupovic; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

7.  Homologous Capsid Proteins Testify to the Common Ancestry of Retroviruses, Caulimoviruses, Pseudoviruses, and Metaviruses.

Authors:  Mart Krupovic; Eugene V Koonin
Journal:  J Virol       Date:  2017-05-26       Impact factor: 5.103

8.  A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Authors:  Ying Liu; Sonoko Ishino; Yoshizumi Ishino; Gérard Pehau-Arnaudet; Mart Krupovic; David Prangishvili
Journal:  J Virol       Date:  2017-06-09       Impact factor: 5.103

9.  Insights into head-tailed viruses infecting extremely halophilic archaea.

Authors:  Maija K Pietilä; Pasi Laurinmäki; Daniel A Russell; Ching-Chung Ko; Deborah Jacobs-Sera; Sarah J Butcher; Dennis H Bamford; Roger W Hendrix
Journal:  J Virol       Date:  2013-01-02       Impact factor: 5.103

10.  Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.

Authors:  Álvaro Ortega-Esteban; Carlos P Mata; María J Rodríguez-Espinosa; Daniel Luque; Nerea Irigoyen; Javier M Rodríguez; Pedro J de Pablo; José R Castón
Journal:  J Virol       Date:  2020-11-23       Impact factor: 5.103

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