Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Integrated genetic and computation methods for in planta cytometry.

Literature DB >> 22466793

Integrated genetic and computation methods for in planta cytometry.

Fernán Federici¹, Lionel Dupuy, Laurent Laplaze, Marcus Heisler, Jim Haseloff.

Abstract

We present the coupled use of specifically localized fluorescent gene markers and image processing for automated quantitative analysis of cell growth and genetic activity across living plant tissues. We used fluorescent protein markers to identify cells, create seeds and boundaries for the automatic segmentation of cell geometries and ratiometrically measure gene expression cell by cell in Arabidopsis thaliana.

Entities: Species

Mesh：

Substances：
Cytokinins

Year: 2012 PMID： 22466793 DOI： 10.1038/nmeth.1940

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

12 in total

1. Two-phase active contour method for semiautomatic segmentation of the heart and blood vessels from MRI images for 3D visualization.

Authors: Piotr Makowski; Thomas Sangild Sørensen; Søren Vorre Therkildsen; Andrzej Materka; Hans Stødkilde-Jørgensen; Erik Morre Pedersen
Journal: Comput Med Imaging Graph Date: 2002 Jan-Feb Impact factor: 4.790

2. Gravity-regulated differential auxin transport from columella to lateral root cap cells.

Authors: Iris Ottenschläger; Patricia Wolff; Chris Wolverton; Rishikesh P Bhalerao; Göran Sandberg; Hideo Ishikawa; Mike Evans; Klaus Palme
Journal: Proc Natl Acad Sci U S A Date: 2003-02-19 Impact factor: 11.205

3. Marking cell lineages in living tissues.

Authors: Smita Kurup; John Runions; Uwe Köhler; Laurent Laplaze; Sarah Hodge; Jim Haseloff
Journal: Plant J Date: 2005-05 Impact factor: 6.417

4. Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics.

Authors: Daniel Sage; Franck R Neumann; Florence Hediger; Susan M Gasser; Michael Unser
Journal: IEEE Trans Image Process Date: 2005-09 Impact factor: 10.856

5. Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem.

Authors: Henrik Jönsson; Marcus Heisler; G Venugopala Reddy; Vikas Agrawal; Victoria Gor; Bruce E Shapiro; Eric Mjolsness; Elliot M Meyerowitz
Journal: Bioinformatics Date: 2005-06 Impact factor: 6.937

6. Quantification of transcription factor expression from Arabidopsis images.

Authors: Daniel L Mace; Ji-Young Lee; Richard W Twigg; Juliette Colinas; Philip N Benfey; Uwe Ohler
Journal: Bioinformatics Date: 2006-07-15 Impact factor: 6.937

7. Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana.

Authors: G T Beemster; T I Baskin
Journal: Plant Physiol Date: 1998-04 Impact factor: 8.340

8. Dynamic analyses of the expression of the HISTONE::YFP fusion protein in arabidopsis show that syncytial endosperm is divided in mitotic domains.

Authors: C Boisnard-Lorig; A Colon-Carmona; M Bauch; S Hodge; P Doerner; E Bancharel; C Dumas; J Haseloff; F Berger
Journal: Plant Cell Date: 2001-03 Impact factor: 11.277

9. Auxin transport through non-hair cells sustains root-hair development.

Authors: Angharad R Jones; Eric M Kramer; Kirsten Knox; Ranjan Swarup; Malcolm J Bennett; Colin M Lazarus; H M Ottoline Leyser; Claire S Grierson
Journal: Nat Cell Biol Date: 2008-12-14 Impact factor: 28.824

10. Measuring the activity of BioBrick promoters using an in vivo reference standard.

Authors: Jason R Kelly; Adam J Rubin; Joseph H Davis; Caroline M Ajo-Franklin; John Cumbers; Michael J Czar; Kim de Mora; Aaron L Glieberman; Dileep D Monie; Drew Endy
Journal: J Biol Eng Date: 2009-03-20 Impact factor: 4.355

32 in total

1. Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas.

Authors: Thomas D Montenegro-Johnson; Petra Stamm; Soeren Strauss; Alexander T Topham; Michail Tsagris; Andrew T A Wood; Richard S Smith; George W Bassel
Journal: Plant Cell Date: 2015-04-21 Impact factor: 11.277

2. Accuracy in Quantitative 3D Image Analysis.

Authors: George W Bassel
Journal: Plant Cell Date: 2015-03-24 Impact factor: 11.277

Review 3. Synthetic Botany.

Authors: Christian R Boehm; Bernardo Pollak; Nuri Purswani; Nicola Patron; Jim Haseloff
Journal: Cold Spring Harb Perspect Biol Date: 2017-07-05 Impact factor: 10.005

Review 4. Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales.

Authors: Leah R Band; John A Fozard; Christophe Godin; Oliver E Jensen; Tony Pridmore; Malcolm J Bennett; John R King
Journal: Plant Cell Date: 2012-10-30 Impact factor: 11.277

5. Quantitative 4D analyses of epithelial folding during Drosophila gastrulation.

Authors: Zia Khan; Yu-Chiun Wang; Eric F Wieschaus; Matthias Kaschube
Journal: Development Date: 2014-06-19 Impact factor: 6.868

6. From one cell to many: Morphogenetic field of lateral root founder cells in Arabidopsis thaliana is built by gradual recruitment.

Authors: Héctor H Torres-Martínez; Paul Hernández-Herrera; Gabriel Corkidi; Joseph G Dubrovsky
Journal: Proc Natl Acad Sci U S A Date: 2020-08-12 Impact factor: 11.205

7. Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

Authors: Mily Ron; Kaisa Kajala; Germain Pauluzzi; Dongxue Wang; Mauricio A Reynoso; Kristina Zumstein; Jasmine Garcha; Sonja Winte; Helen Masson; Soichi Inagaki; Fernán Federici; Neelima Sinha; Roger B Deal; Julia Bailey-Serres; Siobhan M Brady
Journal: Plant Physiol Date: 2014-05-27 Impact factor: 8.340