Literature DB >> 22464106

Small non-coding RNAs mount a silent revolution in gene expression.

Antti P Aalto1, Amy E Pasquinelli.   

Abstract

During the past decade, it has become evident that small non-coding RNAs (ncRNAs) participate in widespread and essential regulatory mechanisms in most eukaryotic cells. Novel classes of small RNAs, their biogenesis pathways and cellular effects are continuously being described, and new properties of already established ncRNAs are still being discovered. As the list of small RNA molecules and their roles becomes more and more extensive, one can get lost in the midst of new information. In this review, we attempt to bring order to the small ncRNA transcriptome by covering some of the major milestones of recent years. We go through many of the new properties that have been attributed to already familiar RNA molecules, and introduce some of the more recent novel classes of tiny ncRNAs.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22464106      PMCID: PMC3372702          DOI: 10.1016/j.ceb.2012.03.006

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  51 in total

1.  Probing the initiation and effector phases of the somatic piRNA pathway in Drosophila.

Authors:  Astrid D Haase; Silvia Fenoglio; Felix Muerdter; Paloma M Guzzardo; Benjamin Czech; Darryl J Pappin; Caifu Chen; Assaf Gordon; Gregory J Hannon
Journal:  Genes Dev       Date:  2010-10-21       Impact factor: 11.361

Review 2.  Gene silencing by microRNAs: contributions of translational repression and mRNA decay.

Authors:  Eric Huntzinger; Elisa Izaurralde
Journal:  Nat Rev Genet       Date:  2011-02       Impact factor: 53.242

3.  Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Authors:  Eugene Berezikov; Nicolas Robine; Anastasia Samsonova; Jakub O Westholm; Ammar Naqvi; Jui-Hung Hung; Katsutomo Okamura; Qi Dai; Diane Bortolamiol-Becet; Raquel Martin; Yongjun Zhao; Phillip D Zamore; Gregory J Hannon; Marco A Marra; Zhiping Weng; Norbert Perrimon; Eric C Lai
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

Review 4.  A parsimonious model for gene regulation by miRNAs.

Authors:  Sergej Djuranovic; Ali Nahvi; Rachel Green
Journal:  Science       Date:  2011-02-04       Impact factor: 47.728

5.  Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.

Authors:  Jr-Shiuan Yang; Thomas Maurin; Nicolas Robine; Kasper D Rasmussen; Kate L Jeffrey; Rohit Chandwani; Eirini P Papapetrou; Michel Sadelain; Dónal O'Carroll; Eric C Lai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-10       Impact factor: 11.205

6.  Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

Authors:  Christel Rouget; Catherine Papin; Anthony Boureux; Anne-Cécile Meunier; Bénédicte Franco; Nicolas Robine; Eric C Lai; Alain Pelisson; Martine Simonelig
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

Authors:  Anthony K L Leung; Amanda G Young; Arjun Bhutkar; Grace X Zheng; Andrew D Bosson; Cydney B Nielsen; Phillip A Sharp
Journal:  Nat Struct Mol Biol       Date:  2011-01-23       Impact factor: 15.369

9.  miRBase: integrating microRNA annotation and deep-sequencing data.

Authors:  Ana Kozomara; Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2010-10-30       Impact factor: 16.971

10.  A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation.

Authors:  Kirk B Burkhart; Shouhong Guang; Bethany A Buckley; Lily Wong; Aaron F Bochner; Scott Kennedy
Journal:  PLoS Genet       Date:  2011-08-25       Impact factor: 5.917

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  43 in total

Review 1.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

Review 2.  Slicing tRNAs to boost functional ncRNA diversity.

Authors:  Jennifer Gebetsberger; Norbert Polacek
Journal:  RNA Biol       Date:  2013-11-21       Impact factor: 4.652

3.  Molecular dynamics simulations identify time scale of conformational changes responsible for conformational selection in molecular recognition of HIV-1 transactivation responsive RNA.

Authors:  Francesco Musiani; Giulia Rossetti; Luciana Capece; Thomas Martin Gerger; Cristian Micheletti; Gabriele Varani; Paolo Carloni
Journal:  J Am Chem Soc       Date:  2014-10-27       Impact factor: 15.419

4.  Regulatory Non-Coding RNAs: An Overview.

Authors:  Camille Virciglio; Yoann Abel; Mathieu Rederstorff
Journal:  Methods Mol Biol       Date:  2021

Review 5.  MicroRNA biogenesis: regulating the regulators.

Authors:  Emily F Finnegan; Amy E Pasquinelli
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-11-19       Impact factor: 8.250

Review 6.  RNA interference: concept to reality in crop improvement.

Authors:  Satyajit Saurabh; Ambarish S Vidyarthi; Dinesh Prasad
Journal:  Planta       Date:  2014-01-09       Impact factor: 4.116

Review 7.  Single molecule fluorescence approaches shed light on intracellular RNAs.

Authors:  Sethuramasundaram Pitchiaya; Laurie A Heinicke; Thomas C Custer; Nils G Walter
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

Review 8.  Male germline transmits fetal alcohol epigenetic marks for multiple generations: a review.

Authors:  Dipak K Sarkar
Journal:  Addict Biol       Date:  2015-01-12       Impact factor: 4.280

9.  Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes.

Authors:  Lisa L Hall; Dawn M Carone; Alvin V Gomez; Heather J Kolpa; Meg Byron; Nitish Mehta; Frank O Fackelmayer; Jeanne B Lawrence
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

Review 10.  Epigenetics and the developmental origins of inflammatory bowel diseases.

Authors:  Richard Kellermayer
Journal:  Can J Gastroenterol       Date:  2012-12       Impact factor: 3.522

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