Literature DB >> 22459263

Elongation kinetics of polyglutamine peptide fibrils: a quartz crystal microbalance with dissipation study.

Robert H Walters1, Kurt H Jacobson, Joel A Pedersen, Regina M Murphy.   

Abstract

Abnormally expanded polyglutamine domains in proteins are associated with several neurodegenerative diseases, including Huntington's disease. Expansion of the polyglutamine (polyQ) domain facilitates aggregation of the affected protein, and several studies directly link aggregation to neurotoxicity. Studies of synthetic polyQ peptides have contributed substantially to our understanding of the mechanism of aggregation. In this report, polyQ fibrils were immobilized onto a sensor, and their elongation by polyQ peptides of various length and conformation was examined using quartz crystal microbalance with dissipation monitoring (QCM-D). The rate of elongation increased as the peptide length increased from 8 to 24 glutamines (Q8, Q20, and Q24). Monomer conformation affected elongation rates: insertion of a β-turn template d-Pro-Gly in the center of the peptide increased elongation rates several-fold, while insertion of Pro-Pro dramatically slowed elongation. Dissipation measurements of the QCM-D provided qualitative information about mechanical properties of the elongating fibrils. These data showed clear differences in the characteristics of the elongating aggregates, depending on the specific identity of the associating polyQ peptide. Elongation rates were sensitive to the pH and ionic strength of the buffer. Comparison of QCM-D data with those obtained by optical waveguide lightmode spectroscopy revealed that very little water was associated with the elongation of fibrils by the peptide containing d-Pro-Gly, but a significant amount of water was associated when the fibrils were elongated by Q20. Together, the data indicate that elongation of polyQ fibrils can occur without full consolidation to the fibril structure, resulting in variations to the aggregate structure during elongation.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22459263      PMCID: PMC3572748          DOI: 10.1016/j.jmb.2012.03.017

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  53 in total

1.  Shear acoustic wave biosensor for detecting DNA intrinsic viscosity and conformation: a study with QCM-D.

Authors:  Achilleas Tsortos; George Papadakis; Electra Gizeli
Journal:  Biosens Bioelectron       Date:  2008-07-15       Impact factor: 10.618

2.  Identification of anti-prion compounds as efficient inhibitors of polyglutamine protein aggregation in a zebrafish model.

Authors:  Niclas W Schiffer; Sarah A Broadley; Thomas Hirschberger; Paul Tavan; Hans A Kretzschmar; Armin Giese; Christian Haass; F Ulrich Hartl; Bettina Schmid
Journal:  J Biol Chem       Date:  2006-12-14       Impact factor: 5.157

3.  Aggregation kinetics of interrupted polyglutamine peptides.

Authors:  Robert H Walters; Regina M Murphy
Journal:  J Mol Biol       Date:  2011-07-29       Impact factor: 5.469

4.  QCM Operation in Liquids:  An Explanation of Measured Variations in Frequency and Q Factor with Liquid Conductivity.

Authors:  M Rodahl; F Höök; B Kasemo
Journal:  Anal Chem       Date:  1996-07-01       Impact factor: 6.986

5.  Modulation of polyglutamine conformations and dimer formation by the N-terminus of huntingtin.

Authors:  Tim E Williamson; Andreas Vitalis; Scott L Crick; Rohit V Pappu
Journal:  J Mol Biol       Date:  2009-12-21       Impact factor: 5.469

6.  Polyglutamine length-dependent interaction of Hsp40 and Hsp70 family chaperones with truncated N-terminal huntingtin: their role in suppression of aggregation and cellular toxicity.

Authors:  N R Jana; M Tanaka; G h Wang; N Nukina
Journal:  Hum Mol Genet       Date:  2000-08-12       Impact factor: 6.150

7.  Structural and functional analysis of ataxin-2 and ataxin-3.

Authors:  Mario Albrecht; Michael Golatta; Ullrich Wüllner; Thomas Lengauer
Journal:  Eur J Biochem       Date:  2004-08

8.  Aggregated polyglutamine peptides delivered to nuclei are toxic to mammalian cells.

Authors:  Wen Yang; John R Dunlap; Richard B Andrews; Ronald Wetzel
Journal:  Hum Mol Genet       Date:  2002-11-01       Impact factor: 6.150

9.  Quartz crystal microbalance analysis of growth kinetics for aggregation intermediates of the amyloid-beta protein.

Authors:  Joseph A Kotarek; Kathryn C Johnson; Melissa A Moss
Journal:  Anal Biochem       Date:  2008-03-16       Impact factor: 3.365

10.  The elongation of yeast prion fibers involves separable steps of association and conversion.

Authors:  Thomas Scheibel; Jesse Bloom; Susan L Lindquist
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

View more
  9 in total

1.  Ion-specific effects on prion nucleation and strain formation.

Authors:  Jonathan Rubin; Hasan Khosravi; Kathryn L Bruce; Megan E Lydon; Sven H Behrens; Yury O Chernoff; Andreas S Bommarius
Journal:  J Biol Chem       Date:  2013-08-29       Impact factor: 5.157

2.  Evaluation of Nanoparticle Tracking for Characterization of Fibrillar Protein Aggregates.

Authors:  Dennis T Yang; Xiaomeng Lu; Yamin Fan; Regina M Murphy
Journal:  AIChE J       Date:  2014-04-01       Impact factor: 3.993

3.  Backbone Engineering within a Latent β-Hairpin Structure to Design Inhibitors of Polyglutamine Amyloid Formation.

Authors:  Karunakar Kar; Matthew A Baker; George A Lengyel; Cody L Hoop; Ravindra Kodali; In-Ja Byeon; W Seth Horne; Patrick C A van der Wel; Ronald Wetzel
Journal:  J Mol Biol       Date:  2016-12-13       Impact factor: 5.469

4.  A coarse-grained model for polyglutamine aggregation modulated by amphipathic flanking sequences.

Authors:  Kiersten M Ruff; Siddique J Khan; Rohit V Pappu
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

5.  β-hairpin-mediated nucleation of polyglutamine amyloid formation.

Authors:  Karunakar Kar; Cody L Hoop; Kenneth W Drombosky; Matthew A Baker; Ravindra Kodali; Irene Arduini; Patrick C A van der Wel; W Seth Horne; Ronald Wetzel
Journal:  J Mol Biol       Date:  2013-01-23       Impact factor: 5.469

6.  An Analysis of Biomolecular Force Fields for Simulations of Polyglutamine in Solution.

Authors:  Aaron M Fluitt; Juan J de Pablo
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

7.  Alzheimer Aβ peptide interactions with lipid membranes: fibrils, oligomers and polymorphic amyloid channels.

Authors:  Florentina Tofoleanu; Nicolae-Viorel Buchete
Journal:  Prion       Date:  2012-08-09       Impact factor: 3.931

8.  Live-cell super-resolution microscopy reveals a primary role for diffusion in polyglutamine-driven aggresome assembly.

Authors:  Meng Lu; Luca Banetta; Laurence J Young; Edward J Smith; Gillian P Bates; Alessio Zaccone; Gabriele S Kaminski Schierle; Alan Tunnacliffe; Clemens F Kaminski
Journal:  J Biol Chem       Date:  2018-11-06       Impact factor: 5.157

9.  Cu/Zn-superoxide dismutase forms fibrillar hydrogels in a pH-dependent manner via a water-rich extended intermediate state.

Authors:  Noriko Fujiwara; Michiru Wagatsuma; Naoto Oba; Daisaku Yoshihara; Eiichi Tokuda; Haruhiko Sakiyama; Hironobu Eguchi; Motoko Ichihashi; Yoshiaki Furukawa; Tadashi Inoue; Keiichiro Suzuki
Journal:  PLoS One       Date:  2018-10-05       Impact factor: 3.240

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.