Literature DB >> 22453992

Comparative analysis of the orientation of transmembrane peptides using solid-state (2)H- and (15)N-NMR: mobility matters.

Stephan L Grage1, Erik Strandberg, Parvesh Wadhwani, Santiago Esteban-Martín, Jesús Salgado, Anne S Ulrich.   

Abstract

Many solid-state nuclear magnetic resonance (NMR) approaches for membrane proteins rely on orientation-dependent parameters, from which the alignment of peptide segments in the lipid bilayer can be calculated. Molecules embedded in liquid-crystalline membranes, such as monomeric helices, are highly mobile, leading to partial averaging of the measured NMR parameters. These dynamic effects need to be taken into account to avoid misinterpretation of NMR data. Here, we compare two common NMR approaches: (2)H-NMR quadrupolar waves, and separated local field (15)N-(1)H polarization inversion spin exchange at magic angle (PISEMA) spectra, in order to identify their strengths and drawbacks for correctly determining the orientation and mobility of α-helical transmembrane peptides. We first analyzed the model peptide WLP23 in oriented dimyristoylphosphatidylcholine (DMPC) membranes and then contrasted it with published data on GWALP23 in dilauroylphosphatidylcholine (DLPC). We only obtained consistent tilt angles from the two methods when taking dynamics into account. Interestingly, the two related peptides differ fundamentally in their mobility. Although both helices adopt the same tilt in their respective bilayers (~20°), WLP23 undergoes extensive fluctuations in its azimuthal rotation angle, whereas GWALP23 is much less dynamic. Both alternative NMR methods are suitable for characterizing orientation and dynamics, yet they can be optimally used to address different aspects. PISEMA spectra immediately reveal the presence of large-amplitude rotational fluctuations, which are not directly seen by (2)H-NMR. On the other hand, PISEMA was unable to define the azimuthal rotation angle in the case of the highly dynamic WLP23, though the helix tilt could still be determined, irrespective of any dynamics parameters.

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Year:  2012        PMID: 22453992     DOI: 10.1007/s00249-012-0801-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  28 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Hydrophobic mismatch of mobile transmembrane helices: Merging theory and experiments.

Authors:  Erik Strandberg; Santi Esteban-Martín; Anne S Ulrich; Jesús Salgado
Journal:  Biochim Biophys Acta       Date:  2012-02-02

3.  Membrane alignment of the pore-forming component TatA(d) of the twin-arginine translocase from Bacillus subtilis resolved by solid-state NMR spectroscopy.

Authors:  Torsten H Walther; Stephan L Grage; Nadine Roth; Anne S Ulrich
Journal:  J Am Chem Soc       Date:  2010-10-26       Impact factor: 15.419

4.  On the orientation of a designed transmembrane peptide: toward the right tilt angle?

Authors:  Suat Ozdirekcan; Catherine Etchebest; J Antoinette Killian; Patrick F J Fuchs
Journal:  J Am Chem Soc       Date:  2007-11-15       Impact factor: 15.419

5.  Temperature-dependent transmembrane insertion of the amphiphilic peptide PGLa in lipid bilayers observed by solid state 19F NMR spectroscopy.

Authors:  Sergii Afonin; Stephan L Grage; Marco Ieronimo; Parvesh Wadhwani; Anne S Ulrich
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

6.  Orientation and dynamics of peptides in membranes calculated from 2H-NMR data.

Authors:  Erik Strandberg; Santi Esteban-Martín; Jesús Salgado; Anne S Ulrich
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

7.  Orientational landscapes of peptides in membranes: prediction of (2)H NMR couplings in a dynamic context.

Authors:  Santi Esteban-Martín; Diana Giménez; Gustavo Fuertes; Jesús Salgado
Journal:  Biochemistry       Date:  2009-12-08       Impact factor: 3.162

8.  Charged or aromatic anchor residue dependence of transmembrane peptide tilt.

Authors:  Vitaly V Vostrikov; Anna E Daily; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2010-07-28       Impact factor: 5.157

9.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

10.  Structure and orientation of the pore-forming peptide, melittin, in lipid bilayers.

Authors:  R Smith; F Separovic; T J Milne; A Whittaker; F M Bennett; B A Cornell; A Makriyannis
Journal:  J Mol Biol       Date:  1994-08-19       Impact factor: 5.469

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  7 in total

1.  Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices.

Authors:  Orlando L Sánchez-Muñoz; Erik Strandberg; E Esteban-Martín; Stephan L Grage; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

2.  Influence of glutamic acid residues and pH on the properties of transmembrane helices.

Authors:  Venkatesan Rajagopalan; Denise V Greathouse; Roger E Koeppe
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-01-07       Impact factor: 3.747

3.  Single tryptophan and tyrosine comparisons in the N-terminal and C-terminal interface regions of transmembrane GWALP peptides.

Authors:  Nicholas J Gleason; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2013-10-29       Impact factor: 2.991

4.  3D hydrophobic moment vectors as a tool to characterize the surface polarity of amphiphilic peptides.

Authors:  Sabine Reißer; Erik Strandberg; Thomas Steinbrecher; Anne S Ulrich
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

5.  Homo- and heteromeric interaction strengths of the synergistic antimicrobial peptides PGLa and magainin 2 in membranes.

Authors:  Jonathan Zerweck; Erik Strandberg; Jochen Bürck; Johannes Reichert; Parvesh Wadhwani; Olga Kukharenko; Anne S Ulrich
Journal:  Eur Biophys J       Date:  2016-04-06       Impact factor: 1.733

6.  Membrane Thinning and Thickening Induced by Membrane-Active Amphipathic Peptides.

Authors:  Stephan L Grage; Sergii Afonin; Sezgin Kara; Gernot Buth; Anne S Ulrich
Journal:  Front Cell Dev Biol       Date:  2016-06-24

7.  The Transmembrane Helix Tilt May Be Determined by the Balance between Precession Entropy and Lipid Perturbation.

Authors:  Yana Gofman; Turkan Haliloglu; Nir Ben-Tal
Journal:  J Chem Theory Comput       Date:  2012-06-06       Impact factor: 6.006

  7 in total

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