Literature DB >> 22452843

The regulation of mRNA stability in mammalian cells: 2.0.

Xiangyue Wu1, Gary Brewer.   

Abstract

Messenger RNA decay is an essential step in gene expression to set mRNA abundance in the cytoplasm. The binding of proteins and/or noncoding RNAs to specific recognition sequences or secondary structures within mRNAs dictates mRNA decay rates by recruiting specific enzyme complexes that perform the destruction processes. Often, the cell coordinates the degradation or stabilization of functional subsets of mRNAs encoding proteins collectively required for a biological process. As well, extrinsic or intrinsic stimuli activate signal transduction pathways that modify the mRNA decay machinery with consequent effects on decay rates and mRNA abundance. This review is an update to our 2001 Gene review on mRNA stability in mammalian cells, and we survey the enormous progress made over the past decade.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22452843      PMCID: PMC3340483          DOI: 10.1016/j.gene.2012.03.021

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  166 in total

Review 1.  Multifunctional deadenylase complexes diversify mRNA control.

Authors:  Aaron C Goldstrohm; Marvin Wickens
Journal:  Nat Rev Mol Cell Biol       Date:  2008-03-12       Impact factor: 94.444

2.  Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay.

Authors:  Ana Luísa Silva; Patrícia Ribeiro; Angela Inácio; Stephen A Liebhaber; Luísa Romão
Journal:  RNA       Date:  2008-01-29       Impact factor: 4.942

3.  The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution.

Authors:  Katsutomo Okamura; Michael D Phillips; David M Tyler; Hong Duan; Yu-ting Chou; Eric C Lai
Journal:  Nat Struct Mol Biol       Date:  2008-03-30       Impact factor: 15.369

4.  Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.

Authors:  Olaf Isken; Yoon Ki Kim; Nao Hosoda; Greg L Mayeur; John W B Hershey; Lynne E Maquat
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

5.  GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay.

Authors:  Ana Eulalio; Eric Huntzinger; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2008-03-16       Impact factor: 15.369

6.  Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1.

Authors:  Irina A Vlasova; Nuzha M Tahoe; Danhua Fan; Ola Larsson; Bernd Rattenbacher; Julius R Sternjohn; Jayprakash Vasdewani; George Karypis; Cavan S Reilly; Peter B Bitterman; Paul R Bohjanen
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

7.  Structure of yeast Dom34: a protein related to translation termination factor Erf1 and involved in No-Go decay.

Authors:  Marc Graille; Maxime Chaillet; Herman van Tilbeurgh
Journal:  J Biol Chem       Date:  2008-01-07       Impact factor: 5.157

8.  The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2.

Authors:  Sushmit Maitra; Chu-Fang Chou; Christian A Luber; Kyung-Yeol Lee; Matthias Mann; Ching-Yi Chen
Journal:  RNA       Date:  2008-03-06       Impact factor: 4.942

9.  Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways.

Authors:  Pavel V Ivanov; Niels H Gehring; Joachim B Kunz; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2008-02-07       Impact factor: 11.598

10.  Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells.

Authors:  Dinghai Zheng; Nader Ezzeddine; Chyi-Ying A Chen; Wenmiao Zhu; Xiangwei He; Ann-Bin Shyu
Journal:  J Cell Biol       Date:  2008-07-14       Impact factor: 10.539

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  105 in total

1.  Kruppel-like factor 4 upregulates matrix metalloproteinase 13 expression in chondrocytes via mRNA stabilization.

Authors:  Yuto Takeuchi; Sayuri Tatsuta; Akiyoshi Kito; Junji Fujikawa; Shousaku Itoh; Yuki Itoh; Shigehisa Akiyama; Takashi Yamashiro; Satoshi Wakisaka; Makoto Abe
Journal:  Cell Tissue Res       Date:  2020-06-15       Impact factor: 5.249

2.  The superoxide dismutase 1 3'UTR maintains high expression of the SOD1 gene in cancer cells: The involvement of the RNA-binding protein AUF-1.

Authors:  Shuyu Zhang; Jing Xue; Jie Zheng; Shuai Wang; Jundong Zhou; Yang Jiao; Yangyang Geng; Jinchang Wu; Bethany N Hannafon; Wei-Qun Ding
Journal:  Free Radic Biol Med       Date:  2015-04-20       Impact factor: 7.376

3.  Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.

Authors:  Daniel Dominguez; Peter Freese; Maria S Alexis; Amanda Su; Myles Hochman; Tsultrim Palden; Cassandra Bazile; Nicole J Lambert; Eric L Van Nostrand; Gabriel A Pratt; Gene W Yeo; Brenton R Graveley; Christopher B Burge
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

4.  A novel splice site mutation in the SERPING1 gene leads to haploinsufficiency by complete degradation of the mutant allele mRNA in a case of familial hereditary angioedema.

Authors:  Roger Colobran; Ricardo Pujol-Borrell; Manuel Hernández-González; Mar Guilarte
Journal:  J Clin Immunol       Date:  2014-04-24       Impact factor: 8.317

5.  Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation.

Authors:  Michael T Dill; Zuzanna Makowska; Gaia Trincucci; Andreas J Gruber; Julia E Vogt; Magdalena Filipowicz; Diego Calabrese; Ilona Krol; Daryl T Lau; Luigi Terracciano; Erik van Nimwegen; Volker Roth; Markus H Heim
Journal:  J Clin Invest       Date:  2014-02-24       Impact factor: 14.808

6.  Optimization of mRNA design for protein expression in the crustacean Daphnia magna.

Authors:  Kerstin Törner; Takashi Nakanishi; Tomoaki Matsuura; Yasuhiko Kato; Hajime Watanabe
Journal:  Mol Genet Genomics       Date:  2014-03-02       Impact factor: 3.291

7.  Viral manipulation of host mRNA decay.

Authors:  Liang Guo; Irina Vlasova-St Louis; Paul R Bohjanen
Journal:  Future Virol       Date:  2018-02-23       Impact factor: 1.831

Review 8.  AUF1 regulation of coding and noncoding RNA.

Authors:  Elizabeth J F White; Aerielle E Matsangos; Gerald M Wilson
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-09-13       Impact factor: 9.957

Review 9.  Post-transcriptional control of gene expression by AUF1: mechanisms, physiological targets, and regulation.

Authors:  Elizabeth J F White; Gary Brewer; Gerald M Wilson
Journal:  Biochim Biophys Acta       Date:  2012-12-14

10.  Biomaterials for mRNA delivery.

Authors:  Mohammad Ariful Islam; Emma K G Reesor; Yingjie Xu; Harshal R Zope; Bruce R Zetter; Jinjun Shi
Journal:  Biomater Sci       Date:  2015-08-17       Impact factor: 6.843

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