Literature DB >> 18230761

Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay.

Ana Luísa Silva1, Patrícia Ribeiro, Angela Inácio, Stephen A Liebhaber, Luísa Romão.   

Abstract

mRNA surveillance pathways selectively clear defective mRNAs from the cell. As such, these pathways serve as important modifiers of genetic disorders. Nonsense-mediated decay (NMD), the most intensively studied surveillance pathway, recognizes mRNAs with premature termination codons (PTCs). In mammalian systems the location of a PTC more than 50 nucleotides 5' to the terminal exon-exon junction is a critical determinant of NMD. However, mRNAs with nonsense codons that fulfill this requirement but are located very early in the open reading frame can effectively evade NMD. The unexpected resistance of such mRNAs with AUG-proximal PTCs to accelerated decay suggests that important determinants of NMD remain to be identified. Here, we report that an NMD-sensitive mRNA can be stabilized by artificially tethering the cytoplasmic poly(A) binding protein 1, PABPC1, at a PTC-proximal position. Remarkably, the data further suggest that NMD of an mRNA with an AUG-proximal PTC can also be repressed by PABPC1, which might be brought into proximity with the PTC during cap-dependent translation and 43S scanning. These results reveal a novel parameter of NMD in mammalian cells that can account for the stability of mRNAs with AUG-proximal PTCs. These findings serve to expand current mechanistic models of NMD and mRNA translation.

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Year:  2008        PMID: 18230761      PMCID: PMC2248256          DOI: 10.1261/rna.815108

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  32 in total

1.  Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance.

Authors:  D Muhlrad; R Parker
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

2.  Nonsense mutations in the human beta-globin gene lead to unexpected levels of cytoplasmic mRNA accumulation.

Authors:  L Romão; A Inácio; S Santos; M Avila; P Faustino; P Pacheco; J Lavinha
Journal:  Blood       Date:  2000-10-15       Impact factor: 22.113

3.  Constraints on reinitiation of translation in mammals.

Authors:  M Kozak
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

4.  Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20.

Authors:  Y Ishigaki; X Li; G Serin; L E Maquat
Journal:  Cell       Date:  2001-09-07       Impact factor: 41.582

5.  The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.

Authors:  H Le Hir; D Gatfield; E Izaurralde; M J Moore
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

6.  Demonstration of functional requirement of polypyrimidine tract-binding protein by SELEX RNA during hepatitis C virus internal ribosome entry site-mediated translation initiation.

Authors:  A Anwar; N Ali; R Tanveer; A Siddiqui
Journal:  J Biol Chem       Date:  2000-11-03       Impact factor: 5.157

7.  The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling.

Authors:  Fabrice Lejeune; Yasuhito Ishigaki; Xiaojie Li; Lynne E Maquat
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

8.  A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation.

Authors:  Naoyuki Uchida; Shin-Ichi Hoshino; Hiroaki Imataka; Nahum Sonenberg; Toshiaki Katada
Journal:  J Biol Chem       Date:  2002-10-14       Impact factor: 5.157

9.  hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay.

Authors:  Jürgen Wittmann; Elly M Hol; Hans-Martin Jäck
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

10.  The influence of viral coding sequences on pestivirus IRES activity reveals further parallels with translation initiation in prokaryotes.

Authors:  Simon P Fletcher; Iraj K Ali; Ann Kaminski; Paul Digard; Richard J Jackson
Journal:  RNA       Date:  2002-12       Impact factor: 4.942

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  84 in total

Review 1.  Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-23       Impact factor: 94.444

Review 2.  Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis.

Authors:  Lawrence B Gardner
Journal:  Mol Cancer Res       Date:  2010-02-23       Impact factor: 5.852

3.  Nonsense-mediated mRNA decay (NMD) mechanisms.

Authors:  Saverio Brogna; Jikai Wen
Journal:  Nat Struct Mol Biol       Date:  2009-02       Impact factor: 15.369

4.  DMD exon 1 truncating point mutations: amelioration of phenotype by alternative translation initiation in exon 6.

Authors:  Olga L Gurvich; Baijayanta Maiti; Robert B Weiss; Gaurav Aggarwal; Michael T Howard; Kevin M Flanigan
Journal:  Hum Mutat       Date:  2009-04       Impact factor: 4.878

5.  Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.

Authors:  David Zünd; Andreas R Gruber; Mihaela Zavolan; Oliver Mühlemann
Journal:  Nat Struct Mol Biol       Date:  2013-07-07       Impact factor: 15.369

6.  Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner.

Authors:  Tünde Nyikó; Boglárka Sonkoly; Zsuzsanna Mérai; Anna Hangyáné Benkovics; Dániel Silhavy
Journal:  Plant Mol Biol       Date:  2009-08-04       Impact factor: 4.076

7.  Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.

Authors:  Marcello Clerici; André Mourão; Irina Gutsche; Niels H Gehring; Matthias W Hentze; Andreas Kulozik; Jan Kadlec; Michael Sattler; Stephen Cusack
Journal:  EMBO J       Date:  2009-06-25       Impact factor: 11.598

Review 8.  Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors.

Authors:  Pamela Nicholson; Hasmik Yepiskoposyan; Stefanie Metze; Rodolfo Zamudio Orozco; Nicole Kleinschmidt; Oliver Mühlemann
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

9.  Experimental assessment of splicing variants using expression minigenes and comparison with in silico predictions.

Authors:  Neeraj Sharma; Patrick R Sosnay; Anabela S Ramalho; Christopher Douville; Arianna Franca; Laura B Gottschalk; Jeenah Park; Melissa Lee; Briana Vecchio-Pagan; Karen S Raraigh; Margarida D Amaral; Rachel Karchin; Garry R Cutting
Journal:  Hum Mutat       Date:  2014-09-10       Impact factor: 4.878

Review 10.  Poly(A) binding proteins: are they all created equal?

Authors:  Dixie J Goss; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-12-13       Impact factor: 9.957

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