Literature DB >> 22451923

Mutagenesis of pairwise combinations of histone amino-terminal tails reveals functional redundancy in budding yeast.

Jung-Ae Kim1, Jer-Yuan Hsu, M Mitchell Smith, C David Allis.   

Abstract

A large body of literature provides compelling evidence for the role of evolutionarily conserved core histone residues in various biological processes. However, site-directed mutagenesis of individual residues that are known to be sites of posttranslational modifications often does not result in clear phenotypic defects. In some cases, the combination of multiple mutations can give rise to stronger phenotypes, implying functional redundancy between distinct residues on histones. Here, we examined the "histone redundancy hypothesis" by characterizing double deletion of all pairwise combinations of amino-terminal tails (N-tails) from the four core histones encoded in budding yeast. First, we found that multiple lysine residues on the N-tails of both H2A and H4 are redundantly involved in cell viability. Second, simultaneous deletion of N-tails from H2A and H3 leads to a severe growth defect, which is correlated with perturbed gross chromatin structure in the mutant cells. Finally, by combining point mutations on H3 with deletion of the H2A N-tail, we revealed a redundant role for lysine 4 on H3 and the H2A N-tail in hydroxyurea-mediated response. Altogether, these data suggest that the N-tails of core histones share previously unrecognized, potentially redundant functions that, in some cases are different from those of the widely accepted H2A/H2B and H3/H4 dimer pairs.

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Year:  2012        PMID: 22451923      PMCID: PMC3326485          DOI: 10.1073/pnas.1203453109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  The N-terminus of histone H2B, but not that of histone H3 or its phosphorylation, is essential for chromosome condensation.

Authors:  A E de la Barre; D Angelov; A Molla; S Dimitrov
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

2.  Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin.

Authors:  N Suka; Y Suka; A A Carmen; J Wu; M Grunstein
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

Review 3.  Histone chaperones: 30 years from isolation to elucidation of the mechanisms of nucleosome assembly and disassembly.

Authors:  M Eitoku; L Sato; T Senda; M Horikoshi
Journal:  Cell Mol Life Sci       Date:  2008-02       Impact factor: 9.261

4.  30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Authors:  Philip J J Robinson; Woojin An; Andrew Routh; Fabrizio Martino; Lynda Chapman; Robert G Roeder; Daniela Rhodes
Journal:  J Mol Biol       Date:  2008-04-29       Impact factor: 5.469

5.  Mitotic phosphorylation of histone H3 is governed by Ipl1/aurora kinase and Glc7/PP1 phosphatase in budding yeast and nematodes.

Authors:  J Y Hsu; Z W Sun; X Li; M Reuben; K Tatchell; D K Bishop; J M Grushcow; C J Brame; J A Caldwell; D F Hunt; R Lin; M M Smith; C D Allis
Journal:  Cell       Date:  2000-08-04       Impact factor: 41.582

6.  The set1Delta mutation unveils a novel signaling pathway relayed by the Rad53-dependent hyperphosphorylation of replication protein A that leads to transcriptional activation of repair genes.

Authors:  V Schramke; H Neecke; V Brevet; Y Corda; G Lucchini; M P Longhese; E Gilson; V Géli
Journal:  Genes Dev       Date:  2001-07-15       Impact factor: 11.361

7.  Activation of Rad53 kinase in response to DNA damage and its effect in modulating phosphorylation of the lagging strand DNA polymerase.

Authors:  A Pellicioli; C Lucca; G Liberi; F Marini; M Lopes; P Plevani; A Romano; P P Di Fiore; M Foiani
Journal:  EMBO J       Date:  1999-11-15       Impact factor: 11.598

8.  The N-terminal domains of histones H3 and H4 are not necessary for chromatin assembly factor-1- mediated nucleosome assembly onto replicated DNA in vitro.

Authors:  K Shibahara; A Verreault; B Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

9.  H3 lysine 4 is acetylated at active gene promoters and is regulated by H3 lysine 4 methylation.

Authors:  Benoit Guillemette; Paul Drogaris; Hsiu-Hsu Sophia Lin; Harry Armstrong; Kyoko Hiragami-Hamada; Axel Imhof; Eric Bonneil; Pierre Thibault; Alain Verreault; Richard J Festenstein
Journal:  PLoS Genet       Date:  2011-03-31       Impact factor: 5.917

10.  A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation.

Authors:  Shima Nakanishi; Brian W Sanderson; Kym M Delventhal; William D Bradford; Karen Staehling-Hampton; Ali Shilatifard
Journal:  Nat Struct Mol Biol       Date:  2008-07-11       Impact factor: 15.369

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  10 in total

Review 1.  Chromatin regulation at the frontier of synthetic biology.

Authors:  Albert J Keung; J Keith Joung; Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2015-02-10       Impact factor: 53.242

2.  A highly conserved region within H2B is important for FACT to act on nucleosomes.

Authors:  Suting Zheng; J Brooks Crickard; Abhinaya Srikanth; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2013-11-18       Impact factor: 4.272

3.  Proteolytic histone modification by mast cell tryptase, a serglycin proteoglycan-dependent secretory granule protease.

Authors:  Fabio R Melo; Francesca Vita; Beata Berent-Maoz; Francesca Levi-Schaffer; Giuliano Zabucchi; Gunnar Pejler
Journal:  J Biol Chem       Date:  2014-01-29       Impact factor: 5.157

4.  High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice.

Authors:  Li Lu; Xiangsong Chen; Dean Sanders; Shuiming Qian; Xuehua Zhong
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

Review 5.  Nucleosomes Regulate Base Excision Repair in Chromatin.

Authors:  Rithy Meas; John J Wyrick; Michael J Smerdon
Journal:  Mutat Res Rev Mutat Res       Date:  2017-11-07       Impact factor: 5.657

6.  The amino-terminal tails of histones H2A and H3 coordinate efficient base excision repair, DNA damage signaling and postreplication repair in Saccharomyces cerevisiae.

Authors:  Rithy Meas; Michael J Smerdon; John J Wyrick
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

7.  Case report on the successful removal of an organic penetrating object into the orbit.

Authors:  Leyla Rezae; Farid Najafi; Mehdi Moradinazar; Tooraj Ahmadijouybari
Journal:  J Inj Violence Res       Date:  2013-07-06

8.  Contribution of histone N-terminal tails to the structure and stability of nucleosomes.

Authors:  Wakana Iwasaki; Yuta Miya; Naoki Horikoshi; Akihisa Osakabe; Hiroyuki Taguchi; Hiroaki Tachiwana; Takehiko Shibata; Wataru Kagawa; Hitoshi Kurumizaka
Journal:  FEBS Open Bio       Date:  2013-08-22       Impact factor: 2.693

9.  Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach.

Authors:  Ali Salehzadeh-Yazdi; Yazdan Asgari; Ali Akbar Saboury; Ali Masoudi-Nejad
Journal:  PLoS One       Date:  2014-11-03       Impact factor: 3.240

10.  Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.

Authors:  Likai Wang; Fan Zhang; Siddharth Rode; Kevin K Chin; Eun Esther Ko; Jonghwan Kim; Vishwanath R Iyer; Hong Qiao
Journal:  BMC Genomics       Date:  2017-07-17       Impact factor: 3.969

  10 in total

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