Literature DB >> 22448878

Solvent-induced infrared frequency shifts in aromatic nitriles are quantitatively described by the vibrational Stark effect.

Nicholas M Levinson1, Stephen D Fried, Steven G Boxer.   

Abstract

The physical properties of solvents strongly affect the spectra of dissolved solutes, and this phenomenon can be exploited to gain insight into the solvent-solute interaction. The large solvatochromic shifts observed for many dye molecules in polar solvents are due to variations in the solvent reaction field, and these shifts are widely used to estimate the change in the dye's dipole moment upon photoexcitation, which is typically on the order of ∼1-10 D. In contrast, the change in dipole moment for vibrational transitions is approximately 2 orders of magnitude smaller. Nonetheless, vibrational chromophores display significant solvatochromism, and the relative contributions of specific chemical interactions and electrostatic interactions are debated, complicating the interpretation of vibrational frequency shifts in complex systems such as proteins. Here we present a series of substituted benzonitriles that display widely varying degrees of vibrational solvatochromism. In most cases, this variation can be quantitatively described by the experimentally determined Stark tuning rate, coupled with a simple Onsager-like model of solvation, reinforcing the view that vibrational frequency shifts are largely caused by electrostatic interactions. In addition, we discuss specific cases where continuum solvation models fail to predict solvatochromic shifts, revealing the necessity for more advanced theoretical models that capture local aspects of solute-solvent interactions.

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Year:  2012        PMID: 22448878      PMCID: PMC3404211          DOI: 10.1021/jp301054e

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  20 in total

1.  Probing protein electrostatics with a synthetic fluorescent amino acid.

Authors:  Bruce E Cohen; Tim B McAnaney; Eun Sun Park; Yuh Nung Jan; Steven G Boxer; Lily Yeh Jan
Journal:  Science       Date:  2002-05-31       Impact factor: 47.728

2.  Vibrational solvatochromism and electrochromism of infrared probe molecules containing C≡O, C≡N, C=O, or C-F vibrational chromophore.

Authors:  Jun-Ho Choi; Minhaeng Cho
Journal:  J Chem Phys       Date:  2011-04-21       Impact factor: 3.488

3.  On the electric dipole moments of asymmetric tops: measurement by high-resolution electronic spectroscopy in the gas phase.

Authors:  Diane M Miller; Philip J Morgan; David W Pratt
Journal:  J Phys Chem A       Date:  2009-06-25       Impact factor: 2.781

Review 4.  Stark spectroscopy: applications in chemistry, biology, and materials science.

Authors:  G U Bublitz; S G Boxer
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

5.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

6.  Vibrational stark effect probes for nucleic acids.

Authors:  Lisa N Silverman; Michael E Pitzer; Peter O Ankomah; Steven G Boxer; Edward E Fenlon
Journal:  J Phys Chem B       Date:  2007-09-18       Impact factor: 2.991

7.  Electrostatic fields near the active site of human aldose reductase: 1. New inhibitors and vibrational stark effect measurements.

Authors:  Lauren J Webb; Steven G Boxer
Journal:  Biochemistry       Date:  2008-01-19       Impact factor: 3.162

8.  Using nitrile-derivatized amino acids as infrared probes of local environment.

Authors:  Zelleka Getahun; Cheng-Yen Huang; Ting Wang; Brenda De León; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

9.  Nitrile groups as vibrational probes: calculations of the CN infrared absorption line shape of acetonitrile in water and tetrahydrofuran.

Authors:  Beth A Lindquist; Steven A Corcelli
Journal:  J Phys Chem B       Date:  2008-04-26       Impact factor: 2.991

10.  Nitrile and thiocyanate IR probes: quantum chemistry calculation studies and multivariate least-square fitting analysis.

Authors:  Jun-Ho Choi; Kwang-Im Oh; Hochan Lee; Chewook Lee; Minhaeng Cho
Journal:  J Chem Phys       Date:  2008-04-07       Impact factor: 3.488

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  18 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Detection of electron tunneling across plasmonic nanoparticle-film junctions using nitrile vibrations.

Authors:  Hao Wang; Kun Yao; John A Parkhill; Zachary D Schultz
Journal:  Phys Chem Chem Phys       Date:  2017-02-22       Impact factor: 3.676

3.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

Review 4.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

5.  Amorphous polymer dynamics and free volume element size distributions from ultrafast IR spectroscopy.

Authors:  David J Hoffman; Sebastian M Fica-Contreras; Michael D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

6.  Site-specific measurement of water dynamics in the substrate pocket of ketosteroid isomerase using time-resolved vibrational spectroscopy.

Authors:  Santosh Kumar Jha; Minbiao Ji; Kelly J Gaffney; Steven G Boxer
Journal:  J Phys Chem B       Date:  2012-09-07       Impact factor: 2.991

7.  Conformational Heterogeneity and the Affinity of Substrate Molecular Recognition by Cytochrome P450cam.

Authors:  Edward J Basom; Bryce A Manifold; Megan C Thielges
Journal:  Biochemistry       Date:  2017-06-14       Impact factor: 3.162

8.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

9.  Site-selective Characterization of Src Homology 3 Domain Molecular Recognition with Cyanophenylalanine Infrared Probes.

Authors:  Rachel E Horness; Edward J Basom; Megan C Thielges
Journal:  Anal Methods       Date:  2015-04-08       Impact factor: 2.896

10.  New Insights into Quinine-DNA Binding Using Raman Spectroscopy and Molecular Dynamics Simulations.

Authors:  David Punihaole; Riley J Workman; Shiv Upadhyay; Craig Van Bruggen; Andrew J Schmitz; Theresa M Reineke; Renee R Frontiera
Journal:  J Phys Chem B       Date:  2018-10-17       Impact factor: 2.991

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