Literature DB >> 18397076

Nitrile and thiocyanate IR probes: quantum chemistry calculation studies and multivariate least-square fitting analysis.

Jun-Ho Choi1, Kwang-Im Oh, Hochan Lee, Chewook Lee, Minhaeng Cho.   

Abstract

Hydration effects on the C[Triple Bond]N stretching mode frequencies of MeCN and MeSCN are investigated by carrying out ab initio calculations for a number of MeCN-water and MeSCN-water complexes with varying number of water molecules. It is found that the CN frequency shift induced by the hydrogen-bonding interactions with water molecules originate from two different ways to form hydrogen bonds with the nitrogen atom of the CN group. Considering the MeCN- and MeSCN-water cluster calculation results as databases, we first examined the validity of vibrational Stark effect relationship between the CN frequency and the electric field component parallel to the CN bond and found no strong correlation between the two. However, taking into account of additional electric field vector components is a simple way to generalize the vibrational Stark theory for the nitrile chromophore. Also, the electrostatic potential calculation method has been proposed and examined in detail. It turned out that the interactions of water molecules with nitrogen atom's lone pair orbital and with nitrile pi orbitals can be well described by the electrostatic potential calculation method. The present computational results will be of use to quantitatively simulate various linear and nonlinear vibrational spectra of nitrile compounds in solutions.

Entities:  

Year:  2008        PMID: 18397076     DOI: 10.1063/1.2844787

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  39 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.

Authors:  Aaron T Fafarman; Paul A Sigala; Jason P Schwans; Timothy D Fenn; Daniel Herschlag; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

4.  Solvent-induced infrared frequency shifts in aromatic nitriles are quantitatively described by the vibrational Stark effect.

Authors:  Nicholas M Levinson; Stephen D Fried; Steven G Boxer
Journal:  J Phys Chem B       Date:  2012-04-05       Impact factor: 2.991

5.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

6.  Azido Homoalanine is a Useful Infrared Probe for Monitoring Local Electrostatistics and Sidechain Solvation in Proteins.

Authors:  Jun-Ho Choi; Daniel Raleigh; Minhaeng Cho
Journal:  J Phys Chem Lett       Date:  2011-09-01       Impact factor: 6.475

7.  Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.

Authors:  Chérif F Matta
Journal:  J Comput Chem       Date:  2014-04-29       Impact factor: 3.376

8.  Site-selective Characterization of Src Homology 3 Domain Molecular Recognition with Cyanophenylalanine Infrared Probes.

Authors:  Rachel E Horness; Edward J Basom; Megan C Thielges
Journal:  Anal Methods       Date:  2015-04-08       Impact factor: 2.896

9.  The effects of alpha-helical structure and cyanylated cysteine on each other.

Authors:  Lena Edelstein; Matthew A Stetz; Heather A McMahon; Casey H Londergan
Journal:  J Phys Chem B       Date:  2010-04-15       Impact factor: 2.991

10.  Cyanylated Cysteine: A Covalently Attached Vibrational Probe of Protein-Lipid Contacts.

Authors:  Heather A McMahon; Katherine N Alfieri; Katherine A A Clark; Casey H Londergan
Journal:  J Phys Chem Lett       Date:  2010-02-12       Impact factor: 6.475

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