Literature DB >> 24699080

Two-way communications between ubiquitin-like modifiers and DNA.

Helle D Ulrich1.   

Abstract

Many aspects of nucleic acid metabolism, such as DNA replication, repair and transcription, are regulated by the post-translational modifiers ubiquitin and SUMO. Not surprisingly, DNA itself plays an integral part in determining the modification of most chromatin-associated targets. Conversely, ubiquitination or SUMOylation of a protein can impinge on its DNA-binding properties. This review describes mechanistic principles governing the mutual interactions between DNA and ubiquitin or SUMO.

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Year:  2014        PMID: 24699080     DOI: 10.1038/nsmb.2805

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  127 in total

1.  The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation.

Authors:  Eric S Fischer; Andrea Scrima; Kerstin Böhm; Syota Matsumoto; Gondichatnahalli M Lingaraju; Mahamadou Faty; Takeshi Yasuda; Simone Cavadini; Mitsuo Wakasugi; Fumio Hanaoka; Shigenori Iwai; Heinz Gut; Kaoru Sugasawa; Nicolas H Thomä
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

2.  Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage.

Authors:  Hengbin Wang; Ling Zhai; Jun Xu; Heui-Yun Joo; Sarah Jackson; Hediye Erdjument-Bromage; Paul Tempst; Yue Xiong; Yi Zhang
Journal:  Mol Cell       Date:  2006-05-05       Impact factor: 17.970

3.  MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals.

Authors:  Zhenkun Lou; Katherine Minter-Dykhouse; Sonia Franco; Monica Gostissa; Melissa A Rivera; Arkady Celeste; John P Manis; Jan van Deursen; André Nussenzweig; Tanya T Paull; Frederick W Alt; Junjie Chen
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

Review 4.  PIAS proteins as regulators of small ubiquitin-related modifier (SUMO) modifications and transcription.

Authors:  J J Palvimo
Journal:  Biochem Soc Trans       Date:  2007-12       Impact factor: 5.407

5.  Degradation of transcription factor IRF-1 by the ubiquitin-proteasome pathway. The C-terminal region governs the protein stability.

Authors:  K Nakagawa; H Yokosawa
Journal:  Eur J Biochem       Date:  2000-03

6.  Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.

Authors:  Rintaro Suzuki; Heisaburo Shindo; Akira Tase; Yoshiko Kikuchi; Mitsuhiro Shimizu; Toshimasa Yamazaki
Journal:  Proteins       Date:  2009-05-01

7.  Rad52 SUMOylation affects the efficiency of the DNA repair.

Authors:  Veronika Altmannova; Nadine Eckert-Boulet; Milica Arneric; Peter Kolesar; Radka Chaloupkova; Jiri Damborsky; Patrick Sung; Xiaolan Zhao; Michael Lisby; Lumir Krejci
Journal:  Nucleic Acids Res       Date:  2010-04-05       Impact factor: 16.971

8.  Activation of ubiquitin-dependent DNA damage bypass is mediated by replication protein a.

Authors:  Adelina A Davies; Diana Huttner; Yasukazu Daigaku; Shuhua Chen; Helle D Ulrich
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

9.  Proteasome-mediated processing of Def1, a critical step in the cellular response to transcription stress.

Authors:  Marcus D Wilson; Michelle Harreman; Michael Taschner; James Reid; Jane Walker; Hediye Erdjument-Bromage; Paul Tempst; Jesper Q Svejstrup
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

10.  Architecture and assembly of poly-SUMO chains on PCNA in Saccharomyces cerevisiae.

Authors:  Hanna Windecker; Helle D Ulrich
Journal:  J Mol Biol       Date:  2007-12-08       Impact factor: 5.469

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  27 in total

Review 1.  Replication fork regression and its regulation.

Authors:  Xiangzhou Meng; Xiaolan Zhao
Journal:  FEMS Yeast Res       Date:  2017-01-01       Impact factor: 2.796

Review 2.  Regulation of translesion DNA synthesis: Posttranslational modification of lysine residues in key proteins.

Authors:  Justyna McIntyre; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2015-02-18

Review 3.  Strategic role of the ubiquitin-dependent segregase p97 (VCP or Cdc48) in DNA replication.

Authors:  Kristijan Ramadan; Swagata Halder; Katherine Wiseman; Bruno Vaz
Journal:  Chromosoma       Date:  2016-04-18       Impact factor: 4.316

4.  Defining the impact of sumoylation on substrate binding and catalysis by thymine DNA glycosylase.

Authors:  Christopher T Coey; Alexander C Drohat
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

5.  TDP-43 N terminus encodes a novel ubiquitin-like fold and its unfolded form in equilibrium that can be shifted by binding to ssDNA.

Authors:  Haina Qin; Liang-Zhong Lim; Yuanyuan Wei; Jianxing Song
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-12       Impact factor: 11.205

Review 6.  SUMO-mediated regulation of DNA damage repair and responses.

Authors:  Prabha Sarangi; Xiaolan Zhao
Journal:  Trends Biochem Sci       Date:  2015-03-13       Impact factor: 13.807

7.  DNA activates the Nse2/Mms21 SUMO E3 ligase in the Smc5/6 complex.

Authors:  Nathalia Varejão; Eva Ibars; Jara Lascorz; Neus Colomina; Jordi Torres-Rosell; David Reverter
Journal:  EMBO J       Date:  2018-05-16       Impact factor: 11.598

8.  Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome.

Authors:  Hwa-Young Sun; Nari Kim; Cheol-Sang Hwang; Joo-Yeon Yoo
Journal:  PLoS One       Date:  2015-05-01       Impact factor: 3.240

Review 9.  Ubiquitylation, neddylation and the DNA damage response.

Authors:  Jessica S Brown; Stephen P Jackson
Journal:  Open Biol       Date:  2015-04       Impact factor: 6.411

10.  USP7 is a SUMO deubiquitinase essential for DNA replication.

Authors:  Emilio Lecona; Sara Rodriguez-Acebes; Julia Specks; Andres J Lopez-Contreras; Isabel Ruppen; Matilde Murga; Javier Muñoz; Juan Mendez; Oscar Fernandez-Capetillo
Journal:  Nat Struct Mol Biol       Date:  2016-03-07       Impact factor: 15.369

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