Literature DB >> 22444582

Proximal ligand electron donation and reactivity of the cytochrome P450 ferric-peroxo anion.

Santhosh Sivaramakrishnan1, Hugues Ouellet, Hirotoshi Matsumura, Shenheng Guan, Pierre Moënne-Loccoz, Alma L Burlingame, Paul R Ortiz de Montellano.   

Abstract

CYP125 from Mycobacterium tuberculosis catalyzes sequential oxidation of the cholesterol side-chain terminal methyl group to the alcohol, aldehyde, and finally acid. Here, we demonstrate that CYP125 simultaneously catalyzes the formation of five other products, all of which result from deformylation of the sterol side chain. The aldehyde intermediate is shown to be the precursor of both the conventional acid metabolite and the five deformylation products. The acid arises by protonation of the ferric-peroxo anion species and formation of the ferryl-oxene species, also known as Compound I, followed by hydrogen abstraction and oxygen transfer. The deformylation products arise by addition of the same ferric-peroxo anion to the aldehyde intermediate to give a peroxyhemiacetal that leads to C-C bond cleavage. This bifurcation of the catalytic sequence has allowed us to examine the effect of electron donation by the proximal ligand on the properties of the ferric-peroxo anion. Replacement of the cysteine thiolate iron ligand by a selenocysteine results in UV-vis, EPR, and resonance Raman spectral changes indicative of an increased electron donation from the proximal selenolate ligand to the iron. Analysis of the product distribution in the reaction of the selenocysteine substituted enzyme reveals a gain in the formation of the acid (Compound I pathway) at the expense of deformylation products. These observations are consistent with an increase in the pK(a) of the ferric-peroxo anion, which favors its protonation and, therefore, Compound I formation.
© 2012 American Chemical Society

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22444582      PMCID: PMC3329582          DOI: 10.1021/ja211499q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  THE CARBON MONOXIDE-BINDING PIGMENT OF LIVER MICROSOMES. II. SOLUBILIZATION, PURIFICATION, AND PROPERTIES.

Authors:  T OMURA; R SATO
Journal:  J Biol Chem       Date:  1964-07       Impact factor: 5.157

2.  The final catalytic step of cytochrome p450 aromatase: a density functional theory study.

Authors:  John C Hackett; Robert W Brueggemeier; Christopher M Hadad
Journal:  J Am Chem Soc       Date:  2005-04-13       Impact factor: 15.419

3.  Expression, purification, and enzymatic properties of recombinant human cytochrome P450c27 (CYP27).

Authors:  I A Pikuleva; I Björkhem; M R Waterman
Journal:  Arch Biochem Biophys       Date:  1997-07-01       Impact factor: 4.013

4.  An explosive-degrading cytochrome P450 activity and its targeted application for the phytoremediation of RDX.

Authors:  Elizabeth L Rylott; Rosamond G Jackson; James Edwards; Grant L Womack; Helena M B Seth-Smith; Deborah A Rathbone; Stuart E Strand; Neil C Bruce
Journal:  Nat Biotechnol       Date:  2006-01-22       Impact factor: 54.908

5.  Substrate-assisted catalysis in cytochrome P450eryF.

Authors:  J R Cupp-Vickery; O Han; C R Hutchinson; T L Poulos
Journal:  Nat Struct Biol       Date:  1996-07

6.  Peroxo-iron and oxenoid-iron species as alternative oxygenating agents in cytochrome P450-catalyzed reactions: switching by threonine-302 to alanine mutagenesis of cytochrome P450 2B4.

Authors:  A D Vaz; S J Pernecky; G M Raner; M J Coon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

7.  Characterization of the polyene macrolide P450 epoxidase from Streptomyces natalensis that converts de-epoxypimaricin into pimaricin.

Authors:  Marta V Mendes; Nuria Antón; Juan F Martín; Jesús F Aparicio
Journal:  Biochem J       Date:  2005-02-15       Impact factor: 3.857

8.  A gene cluster for macrolide antibiotic biosynthesis in Streptomyces venezuelae: architecture of metabolic diversity.

Authors:  Y Xue; L Zhao; H W Liu; D H Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

9.  EpoK, a cytochrome P450 involved in biosynthesis of the anticancer agents epothilones A and B. Substrate-mediated rescue of a P450 enzyme.

Authors:  Hiroshi Ogura; Clinton R Nishida; Ute R Hoch; Roshan Perera; John H Dawson; Paul R Ortiz de Montellano
Journal:  Biochemistry       Date:  2004-11-23       Impact factor: 3.162

10.  A novel intermediate in the reaction of seleno CYP119 with m-chloroperbenzoic acid.

Authors:  Santhosh Sivaramakrishnan; Hugues Ouellet; Jing Du; Kirsty J McLean; Katalin F Medzihradszky; John H Dawson; Andrew W Munro; Paul R Ortiz de Montellano
Journal:  Biochemistry       Date:  2011-03-22       Impact factor: 3.162

View more
  14 in total

Review 1.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 2.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

3.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

4.  Active Site Structures of CYP11A1 in the Presence of Its Physiological Substrates and Alterations upon Binding of Adrenodoxin.

Authors:  Qianhong Zhu; Piotr J Mak; Robert C Tuckey; James R Kincaid
Journal:  Biochemistry       Date:  2017-10-20       Impact factor: 3.162

Review 5.  Potential drug targets in the Mycobacterium tuberculosis cytochrome P450 system.

Authors:  Paul R Ortiz de Montellano
Journal:  J Inorg Biochem       Date:  2018-01-12       Impact factor: 4.155

6.  Characterization of a selenocysteine-ligated P450 compound I reveals direct link between electron donation and reactivity.

Authors:  Elizabeth L Onderko; Alexey Silakov; Timothy H Yosca; Michael T Green
Journal:  Nat Chem       Date:  2017-05-29       Impact factor: 24.427

7.  End-On Copper(I) Superoxo and Cu(II) Peroxo and Hydroperoxo Complexes Generated by Cryoreduction/Annealing and Characterized by EPR/ENDOR Spectroscopy.

Authors:  Roman Davydov; Austin E Herzog; Richard J Jodts; Kenneth D Karlin; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2022-01-04       Impact factor: 15.419

8.  A Promiscuous Cytochrome P450 Hydroxylates Aliphatic and Aromatic C-H Bonds of Aromatic 2,5-Diketopiperazines.

Authors:  Guangde Jiang; Yi Zhang; Magan M Powell; Sarah M Hylton; Nicholas W Hiller; Rosemary Loria; Yousong Ding
Journal:  Chembiochem       Date:  2019-03-27       Impact factor: 3.164

9.  A highly conserved mycobacterial cholesterol catabolic pathway.

Authors:  Esther García-Fernández; Daniel J Frank; Beatriz Galán; Petrea M Kells; Larissa M Podust; José L García; Paul R Ortiz de Montellano
Journal:  Environ Microbiol       Date:  2013-03-14       Impact factor: 5.491

Review 10.  Unusual cytochrome p450 enzymes and reactions.

Authors:  F Peter Guengerich; Andrew W Munro
Journal:  J Biol Chem       Date:  2013-04-30       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.