| Literature DB >> 22438921 |
Simona E Budulac1, Judith M Vonk, Dirkje S Postma, Mateusz Siedlinski, Wim Timens, Marike H Boezen.
Abstract
Genome-wide association studies identified single nucleotide polymorphisms (SNPs) in the nicotinic acetylcholine receptors (nAChRs) cluster as a risk factor for nicotine dependency and COPD. We investigated whether SNPs in the nAChR cluster are associated with smoking habits and lung function decline, and if these potential associations are independent of each other. The SNPs rs569207, rs1051730 and rs8034191 in the nAChR cluster were analyzed in the Vlagtwedde-Vlaardingen cohort (n = 1,390) that was followed for 25 years. We used GEE and LME models to analyze the associations of the SNPs with quitting or restarting smoking and with the annual FEV(1) decline respectively. Individuals homozygote (CC) for rs569207 were more likely to quit smoking (OR (95%CI) = 1.58 (1.05-2.38)) compared to wild-type (TT) individuals. Individuals homozygote (TT) for rs1051730 were less likely to quit smoking (0.64 (0.42; 0.97)) compared to wild-type (CC) individuals. None of the SNPs was significantly associated with the annual FEV(1) decline in smokers and ex-smokers. We show that SNPs in the nAChR region are associated with smoking habits such as quitting smoking, but have no significant effect on the annual FEV(1) decline in smokers and ex-smokers, suggesting a potential role of these SNPs in COPD development via smoking habits rather than via direct effects on lung function.Entities:
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Year: 2012 PMID: 22438921 PMCID: PMC3305325 DOI: 10.1371/journal.pone.0033386
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristics of the Vlagtwedde-Vlaardingen cohort at the last survey.
| Vlagtwedde-Vlaardingen cohort (n = 1,390) | |
| Duration of follow-up (years) | 21 (16–22) |
| Median nr. of visits | 7 (5–8) |
| Males, number (%) | 714 (51.4) |
| Age (years)* | 52 (43–60) |
| Height (cm) | 170.3 (9.3) |
| Never smokers, number (%) | 445 (32.0) |
| Ex-smokers, number (%) | 456 (32.8) |
| Current smokers, number (%) | 489 (35.2) |
| Packyears * | 8.9 (0–24) |
| FEV1 (L) | 2.8 (0.7) |
| VC (L) | 3.8 (0.9) |
| FEV1/VC (%) | 73.8 (8.9) |
| FEV1 (% predicted) | 92.6 (15.4) |
| FEV1 change (ml/year) | −20.8 (22.9) |
| No COPD, number (%) | 993 (73.8) |
| COPD, GOLD stage I, number (%) # | 185 (13.8) |
| COPD, GOLD stage II, number (%) # | 146 (10.9) |
| COPD, GOLD stage III, number (%) # | 21 (1.6) |
Data are presented as mean (standard deviation) or * median (range);
FEV1 = forced expiratory volume in one second; VC = vital capacity; COPD = Chronic Obstructive Pulmonary Disease; GOLD = Global Initiative for Chronic Obstructive Lung Disease; GOLD stage I = mild COPD; GOLD stage II = moderate COPD; GOLD stage III = severe COPD; # According to ATS/ERS standards [35].
Figure 1SNPs in the nAChR cluster and OR (95%CI) for quitting smoking in subjects who smoke (upper graph), and OR (95%CI) for restarting to smoke in ex-smokers (lower graph).
Nr. of pairs = number of paired observations in which the subject stopped respectively restarted smoking/ total number of paired observations included in the analysis; Circles represent the odd ratio (OR) and vertical bars represent 95% confidence interval (CI); Wild type was set to one as the reference category; Different total number of paired observations for the SNP genotypes are due to missing data on genotype or smoking habits. The analyses are adjusted for gender and the time between 2 successive surveys. rs569207 TT = wild-type, TC = heterozygote, CC = homozygote variant rs1051730 CC = wild-type CT = heterozygote TT = homozygote variant rs8034191 GG = wild-type, GA = heterozygote, AA = homozygote variant.
SNPs in the nAChR cluster and annual FEV1 decline (ml/year) in smokers, ex-smokers and never smokers.
| SNPs | annual FEV1 decline (smokers)1 | annual FEV1 decline (ex-smokers)2 | annual FEV1 decline (never smokers)3 | |||||||
| B | 95%CI | p | B | 95%CI | p | B | 95%CI | p | ||
|
| a | 0.3 | −7.6–8.3 | 0.939 | 4.1 | −6.4–14.5 | 0.451 | 2.6 | −5.5–10.6 | 0.531 |
| b | 13.1 | −5.7–31.9 | 0.172 | 0.9 | −15.9–17.8 | 0.916 | 2.9 | −13.7–19.7 | 0.727 | |
|
| a | 0.1 | −7.8–8.1 | 0.973 | −2.4 | −12.3 – 7.6 | 0.643 | −5.3 | −13.1 - 2.6 | 0.189 |
| b | 5.4 | −8.2–18.9 | 0.437 | 3.9 | −14.3–22.2 | 0.674 | −0.7 | −15.1 - 13.6 | 0.925 | |
|
| a | −1.1 | −9.2 – 7.1 | 0.919 | −0.3 | −10.2 – 9.8 | 0.964 | −3.6 | −11.4 - 4.3 | 0.370 |
| b | 3.9 | −9.6–17.4 | 0.405 | 5.4 | −11.5–22.3 | 0.531 | −4.8 | −18.6 - 9.1 | 0.499 | |
B = regression coefficient from the linear mixed-effect model, adjusted for 1 = quitting smoking, 2 = restarting smoking, 3 = never smoker, gender, height and age at the first of two successive surveys and time between two successive surveys. “Smokers” refer to those paired observations in which the subject was a smoker at the first of two successive surveys and quitted smoking or continued smoking at the nearest follow-up survey. “Ex-smokers” refer to those paired observations in which the subject was an ex-smoker at the first of two successive surveys and continued being an ex-smoker or restarted smoking at the nearest follow-up survey. “Never smoker” refer to those paired observations in which the subject was a never smoker at the first of two successive surveys and continued being a never smoker at the nearest follow-up survey. a = heterozygotes vs. wild-type; b = homozygote variant vs. wild-type.
SNPs in the nAChR cluster with cigarettes smoked per day in current smokers, and packyears in ever smokers at the last survey.
| SNP | cigarettes/dayin current smokers | packyearsin ever smokers | |||||
| B | 95%CI | p-value | B | 95%CI | p-value | ||
|
| a | −1.5 | −3.3 - 0.4 | 0.111 | −1.5 | −4.1 - 1.0 | 0.238 |
| b | −2.8 | −7.6 - 2.0 | 0.252 | −5.9 | −11.5 - −0.3 | 0.039 | |
|
| a | 1.1 | −0.6–2.9 | 0.207 | 0.1 | −2.4–2.6 | 0.943 |
| b | −1.5 | −4.6 - 1.6 | 0.338 | 0.3 | −4.1–4.7 | 0.901 | |
|
| a | 0.2 | −1.6–2.0 | 0.819 | −0.7 | −3. - 1.9 | 0.600 |
| b | −1.2 | −4.3 - 1.9 | 0.469 | −0.6 | −4.8 - 3.7 | 0.800 | |
B = regression coefficient derived from linear regression model, adjusted for age and gender;
only current smokers at the last survey;
ever smokers are current smokers and ex-smokers together.
a = heterozygote vs. wild-type.
b = homozygote variant vs. wild-type.
Figure 2Summary of the observed associations in the current study.
SNPs = single nucleotide polymorphisms; COPD = Chronic Obstructive Pulmonary Disease; nAChR = nicotinic acetylcholine receptor; + = association; − = no association.