Literature DB >> 22433006

On network derivation, classification, and visualization: a response to Habeck and Moeller.

Erik B Erhardt1, Elena A Allen, Eswar Damaraju, Vince D Calhoun.   

Abstract

In the decade and a half since Biswal's fortuitous discovery of spontaneous correlations in functional imaging data, the field of functional connectivity (FC) has seen exponential growth resulting in the identification of widely replicated intrinsic networks and the innovation of novel analytic methods with the promise of diagnostic application. As such a young field undergoing rapid change, we have yet to converge upon a desired and needed set of standards. In this issue, Habeck and Moeller begin a dialog for developing best practices by providing four criticisms with respect to FC estimation methods, interpretation of FC networks, assessment of FC network features in classifying subpopulations, and network visualization. Here, we respond to Habeck and Moeller and provide our own perspective on the concerns raised in the hope that the neuroimaging field will benefit from this discussion.

Mesh:

Year:  2011        PMID: 22433006      PMCID: PMC3621322          DOI: 10.1089/brain.2011.0022

Source DB:  PubMed          Journal:  Brain Connect        ISSN: 2158-0014


  18 in total

1.  Frontoparietal network involved in successful retrieval from episodic memory. Spatial and temporal analyses using fMRI and ERP.

Authors:  Tetsuya Iidaka; Atsushi Matsumoto; Junpei Nogawa; Yukiko Yamamoto; Norihiro Sadato
Journal:  Cereb Cortex       Date:  2006-07-21       Impact factor: 5.357

2.  Simulated driving and brain imaging: combining behavior, brain activity, and virtual reality.

Authors:  Kara N Carvalho; Godfrey D Pearlson; Robert S Astur; Vince D Calhoun
Journal:  CNS Spectr       Date:  2006-01       Impact factor: 3.790

3.  Consistent resting-state networks across healthy subjects.

Authors:  J S Damoiseaux; S A R B Rombouts; F Barkhof; P Scheltens; C J Stam; S M Smith; C F Beckmann
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-31       Impact factor: 11.205

4.  Age-dependent normal values of T2* and T2' in brain parenchyma.

Authors:  S Siemonsen; J Finsterbusch; J Matschke; A Lorenzen; X-Q Ding; J Fiehler
Journal:  AJNR Am J Neuroradiol       Date:  2008-02-13       Impact factor: 3.825

5.  Seeing is believing: the effect of brain images on judgments of scientific reasoning.

Authors:  David P McCabe; Alan D Castel
Journal:  Cognition       Date:  2007-09-04

6.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

7.  Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization.

Authors:  Koene R A Van Dijk; Trey Hedden; Archana Venkataraman; Karleyton C Evans; Sara W Lazar; Randy L Buckner
Journal:  J Neurophysiol       Date:  2009-11-04       Impact factor: 2.714

8.  Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI.

Authors:  Michael D Greicius; Gaurav Srivastava; Allan L Reiss; Vinod Menon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-15       Impact factor: 11.205

9.  Reliable intrinsic connectivity networks: test-retest evaluation using ICA and dual regression approach.

Authors:  Xi-Nian Zuo; Clare Kelly; Jonathan S Adelstein; Donald F Klein; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2009-11-05       Impact factor: 6.556

10.  A baseline for the multivariate comparison of resting-state networks.

Authors:  Elena A Allen; Erik B Erhardt; Eswar Damaraju; William Gruner; Judith M Segall; Rogers F Silva; Martin Havlicek; Srinivas Rachakonda; Jill Fries; Ravi Kalyanam; Andrew M Michael; Arvind Caprihan; Jessica A Turner; Tom Eichele; Steven Adelsheim; Angela D Bryan; Juan Bustillo; Vincent P Clark; Sarah W Feldstein Ewing; Francesca Filbey; Corey C Ford; Kent Hutchison; Rex E Jung; Kent A Kiehl; Piyadasa Kodituwakku; Yuko M Komesu; Andrew R Mayer; Godfrey D Pearlson; John P Phillips; Joseph R Sadek; Michael Stevens; Ursina Teuscher; Robert J Thoma; Vince D Calhoun
Journal:  Front Syst Neurosci       Date:  2011-02-04
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  15 in total

1.  Differential functional brain network connectivity during visceral interoception as revealed by independent component analysis of fMRI TIME-series.

Authors:  Behnaz Jarrahi; Dante Mantini; Joshua Henk Balsters; Lars Michels; Thomas M Kessler; Ulrich Mehnert; Spyros S Kollias
Journal:  Hum Brain Mapp       Date:  2015-08-07       Impact factor: 5.038

2.  Relationship between MEG global dynamic functional network connectivity measures and symptoms in schizophrenia.

Authors:  L Sanfratello; J M Houck; V D Calhoun
Journal:  Schizophr Res       Date:  2019-05-24       Impact factor: 4.939

3.  Omission of temporal nuisance regressors from dual regression can improve accuracy of fMRI functional connectivity maps.

Authors:  Robert E Kelly; Matthew J Hoptman; George S Alexopoulos; Faith M Gunning; Martin J McKeown
Journal:  Hum Brain Mapp       Date:  2019-06-12       Impact factor: 5.038

4.  Dynamic Functional Network Connectivity in Schizophrenia with Magnetoencephalography and Functional Magnetic Resonance Imaging: Do Different Timescales Tell a Different Story?

Authors:  Lori Sanfratello; Jon M Houck; Vince D Calhoun
Journal:  Brain Connect       Date:  2019-04

5.  Spatial dynamics within and between brain functional domains: A hierarchical approach to study time-varying brain function.

Authors:  Armin Iraji; Zening Fu; Eswar Damaraju; Thomas P DeRamus; Noah Lewis; Juan R Bustillo; Rhoshel K Lenroot; Aysneil Belger; Judith M Ford; Sarah McEwen; Daniel H Mathalon; Bryon A Mueller; Godfrey D Pearlson; Steven G Potkin; Adrian Preda; Jessica A Turner; Jatin G Vaidya; Theo G M van Erp; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2018-12-26       Impact factor: 5.038

6.  Novel in silico multivariate mapping of intrinsic and anticorrelated connectivity to neurocognitive functional maps supports the maturational hypothesis of ADHD.

Authors:  Nina de Lacy; Ian Kodish; Srinivas Rachakonda; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2018-04-22       Impact factor: 5.038

7.  Alterations of resting state functional network connectivity in the brain of nicotine and alcohol users.

Authors:  Victor M Vergara; Jingyu Liu; Eric D Claus; Kent Hutchison; Vince Calhoun
Journal:  Neuroimage       Date:  2016-11-15       Impact factor: 6.556

8.  Pro-cognitive drug effects modulate functional brain network organization.

Authors:  Carsten Giessing; Christiane M Thiel
Journal:  Front Behav Neurosci       Date:  2012-08-28       Impact factor: 3.558

9.  Connectomic intermediate phenotypes for psychiatric disorders.

Authors:  Alex Fornito; Edward T Bullmore
Journal:  Front Psychiatry       Date:  2012-04-19       Impact factor: 4.157

10.  Baseline effects of transcranial direct current stimulation on glutamatergic neurotransmission and large-scale network connectivity.

Authors:  Michael A Hunter; Brian A Coffman; Charles Gasparovic; Vince D Calhoun; Michael C Trumbo; Vincent P Clark
Journal:  Brain Res       Date:  2014-10-12       Impact factor: 3.252

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